Wall clock time and date at job start Mon Mar 30 2020 07:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47184 * 2 1 4 4 C 1.34238 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99854 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.62260 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47140 * 299.61470 * 7 6 4 9 9 C 1.53006 * 109.47164 * 179.61522 * 7 6 4 10 10 C 1.50699 * 109.47265 * 59.61722 * 7 6 4 11 11 H 1.08003 * 120.00271 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99895 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00268 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46680 * 60.00301 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00817 * 14 12 10 18 18 C 1.53221 * 109.62958 * 59.61691 * 6 4 3 19 19 C 1.52961 * 109.40821 * 294.72231 * 18 6 4 20 20 C 1.52961 * 109.81650 * 296.40473 * 19 18 6 21 21 C 1.53234 * 109.40716 * 63.59157 * 20 19 18 22 22 C 1.51264 * 108.53605 * 305.37695 * 21 20 19 23 23 O 1.20755 * 120.84724 * 231.36557 * 22 21 20 24 24 H 1.09001 * 109.47000 * 299.99650 * 1 2 3 25 25 H 1.09000 * 109.47244 * 59.99750 * 1 2 3 26 26 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47443 * 240.00049 * 2 1 3 28 28 H 1.09000 * 109.47244 * 120.00250 * 2 1 3 29 29 H 1.09001 * 109.47002 * 59.99738 * 9 7 6 30 30 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47050 * 300.00004 * 9 7 6 32 32 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.48505 * 54.70180 * 18 6 4 34 34 H 1.08996 * 109.48353 * 174.72841 * 18 6 4 35 35 H 1.09009 * 109.41246 * 56.50015 * 19 18 6 36 36 H 1.08990 * 109.41986 * 176.36693 * 19 18 6 37 37 H 1.08997 * 109.48142 * 183.57373 * 20 19 18 38 38 H 1.09006 * 109.48079 * 303.61417 * 20 19 18 39 39 H 1.09001 * 109.62354 * 65.08867 * 21 20 19 40 40 H 1.08998 * 109.62761 * 185.46412 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4488 2.8613 -0.0001 8 1 5.7865 2.3357 0.8931 9 6 6.0299 4.2767 -0.0093 10 6 5.9148 2.1191 -1.2261 11 1 5.1932 1.7400 -1.9347 12 6 7.2624 1.9251 -1.4439 13 7 8.1410 2.3872 -0.5815 14 14 7.8399 1.0045 -2.9633 15 1 7.3792 1.7199 -4.1803 16 1 9.3230 0.9308 -2.9635 17 1 7.2764 -0.3695 -2.9536 18 6 3.4436 3.6912 1.2457 19 6 1.9285 3.8877 1.1715 20 6 1.5781 4.7706 -0.0275 21 6 1.9851 4.0573 -1.3211 22 6 3.4487 3.6871 -1.2261 23 8 4.2206 3.9829 -2.1064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.6929 4.8135 0.8775 30 1 7.1185 4.2225 -0.0098 31 1 5.6922 4.8023 -0.9024 32 1 9.0892 2.2503 -0.7345 33 1 3.6922 3.1150 2.1369 34 1 3.9345 4.6632 1.2926 35 1 1.4423 2.9183 1.0618 36 1 1.5799 4.3664 2.0866 37 1 0.5046 4.9592 -0.0386 38 1 2.1130 5.7172 0.0495 39 1 1.3866 3.1548 -1.4455 40 1 1.8269 4.7214 -2.1708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709465327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:05 Heat of formation + Delta-G solvation = -129.767887 kcal Electronic energy + Delta-G solvation = -22686.192551 eV Core-core repulsion = 19466.143051 eV Total energy + Delta-G solvation = -3220.049500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75923 -38.83057 -36.22588 -35.92503 -34.05503 -31.76569 -31.35712 -29.14775 -27.87336 -25.25669 -23.77711 -22.91558 -21.42689 -21.11304 -20.20622 -18.21751 -16.91441 -16.57866 -15.90557 -15.71703 -15.33774 -14.46573 -14.22070 -14.07299 -13.80551 -13.42530 -13.28820 -12.76245 -12.74968 -12.33837 -12.26926 -11.93346 -11.81310 -11.50839 -11.43781 -11.14473 -10.92377 -10.62450 -10.57908 -10.47511 -10.28442 -10.17043 -10.01785 -9.89868 -9.84698 -9.29465 -8.82267 -8.44376 -8.04918 -5.78668 -3.76417 2.44590 2.96948 3.28721 3.47787 3.48634 3.54127 4.59680 4.63656 5.01520 5.03731 5.05368 5.09886 5.17460 5.25764 5.39739 5.41300 5.54880 5.67833 5.76199 5.79724 5.84793 5.94050 5.97865 6.03819 6.16527 6.18322 6.24050 6.41575 6.57048 6.64338 6.92834 6.96305 7.17194 7.29837 7.80022 7.99465 8.20823 8.29337 8.48934 8.54321 9.13123 9.81471 11.29314 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.008459 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.422820 B = 3309.161392 C = 3966.852143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.471 3.529 5 O -0.459 6.459 6 C -0.084 4.084 7 C 0.071 3.929 8 H 0.038 0.962 9 C -0.146 4.146 10 C -0.465 4.465 11 H 0.046 0.954 12 C 0.058 3.942 13 N -0.901 5.901 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.280 1.280 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.170 4.170 22 C 0.365 3.635 23 O -0.399 6.399 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.008 0.992 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.257 0.743 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 1.676 3.961 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.311 3.689 5 O -0.341 6.341 6 C -0.086 4.086 7 C 0.053 3.947 8 H 0.056 0.944 9 C -0.204 4.204 10 C -0.503 4.503 11 H 0.064 0.936 12 C -0.141 4.141 13 N -0.542 5.542 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.206 1.206 18 C -0.145 4.145 19 C -0.174 4.174 20 C -0.143 4.143 21 C -0.208 4.208 22 C 0.235 3.765 23 O -0.267 6.267 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.757 1.500 3.488 16.208 hybrid contribution 0.386 -0.816 -0.795 1.203 sum -15.370 0.684 2.693 15.619 Atomic orbital electron populations 1.21776 0.93206 1.02453 1.03158 1.22910 0.94778 0.81818 1.02413 1.86579 1.25737 1.30798 1.85085 1.23277 0.79682 0.92351 0.73615 1.90719 1.59674 1.42013 1.41656 1.21685 1.01916 0.88455 0.96511 1.18591 0.82279 0.94887 0.98991 0.94389 1.22036 1.05104 0.96210 0.97005 1.20735 0.91549 1.32600 1.05426 0.93565 1.24759 0.96776 0.96150 0.96396 1.69844 1.01207 1.47267 1.35863 0.86713 0.77188 0.80430 0.84027 1.20490 1.21477 1.20586 1.21695 0.95591 1.01307 0.95938 1.21871 0.96187 1.01722 0.97627 1.21419 1.00940 0.98502 0.93466 1.22368 0.96267 1.02642 0.99543 1.24259 0.89604 0.76925 0.85698 1.90435 1.57364 1.41761 1.37124 0.91674 0.91719 0.90821 0.91627 0.91606 0.97357 0.89295 0.93899 0.93342 0.91029 0.89769 0.89308 0.91802 0.91414 0.91895 0.88327 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.15 0.38 -0.99 16 2 C 0.05 0.73 6.19 37.15 0.23 0.96 16 3 O -0.36 -5.78 5.70 -39.28 -0.22 -6.00 16 4 C 0.47 9.64 6.09 36.00 0.22 9.86 16 5 O -0.46 -11.21 14.43 -18.75 -0.27 -11.48 16 6 C -0.08 -1.72 0.29 -156.42 -0.05 -1.76 16 7 C 0.07 1.81 1.31 -91.77 -0.12 1.69 16 8 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 9 C -0.15 -3.61 8.33 37.16 0.31 -3.30 16 10 C -0.46 -13.51 5.40 -34.44 -0.19 -13.70 16 11 H 0.05 1.39 6.72 -52.48 -0.35 1.04 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 13 N -0.90 -27.17 11.32 55.43 0.63 -26.54 16 14 Si 0.89 23.42 29.54 -169.99 -5.02 18.40 16 15 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 18 C -0.11 -1.74 4.49 -26.64 -0.12 -1.86 16 19 C -0.14 -1.72 5.59 -26.77 -0.15 -1.87 16 20 C -0.11 -1.26 5.94 -26.63 -0.16 -1.42 16 21 C -0.17 -2.47 5.74 -27.49 -0.16 -2.63 16 22 C 0.37 7.26 5.14 -28.48 -0.15 7.12 16 23 O -0.40 -9.55 13.41 6.00 0.08 -9.47 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 29 H 0.01 0.16 6.32 -51.93 -0.33 -0.17 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 31 H 0.04 1.07 5.81 -51.93 -0.30 0.77 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.34 6.16 -51.93 -0.32 1.02 16 35 H 0.09 1.13 5.27 -51.92 -0.27 0.86 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.34 6.95 -51.93 -0.36 0.98 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -33.52 306.94 -6.25 -39.77 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.03 Total: -3.04 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.04 Total: -6.25 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.63 Total: -26.54 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.41 Total: -26.95 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.52 -6.25 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.996 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds