Wall clock time and date at job start Mon Mar 30 2020 07:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47184 * 2 1 4 4 C 1.34238 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99854 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.62260 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47140 * 299.61470 * 7 6 4 9 9 C 1.53006 * 109.47164 * 179.61522 * 7 6 4 10 10 C 1.50699 * 109.47265 * 59.61722 * 7 6 4 11 11 H 1.08003 * 120.00271 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99895 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00268 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46680 * 60.00301 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00817 * 14 12 10 18 18 C 1.53221 * 109.62958 * 59.61691 * 6 4 3 19 19 C 1.52961 * 109.40821 * 294.72231 * 18 6 4 20 20 C 1.52961 * 109.81650 * 296.40473 * 19 18 6 21 21 C 1.53234 * 109.40716 * 63.59157 * 20 19 18 22 22 C 1.51264 * 108.53605 * 305.37695 * 21 20 19 23 23 O 1.20755 * 120.84724 * 231.36557 * 22 21 20 24 24 H 1.09001 * 109.47000 * 299.99650 * 1 2 3 25 25 H 1.09000 * 109.47244 * 59.99750 * 1 2 3 26 26 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47443 * 240.00049 * 2 1 3 28 28 H 1.09000 * 109.47244 * 120.00250 * 2 1 3 29 29 H 1.09001 * 109.47002 * 59.99738 * 9 7 6 30 30 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47050 * 300.00004 * 9 7 6 32 32 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.48505 * 54.70180 * 18 6 4 34 34 H 1.08996 * 109.48353 * 174.72841 * 18 6 4 35 35 H 1.09009 * 109.41246 * 56.50015 * 19 18 6 36 36 H 1.08990 * 109.41986 * 176.36693 * 19 18 6 37 37 H 1.08997 * 109.48142 * 183.57373 * 20 19 18 38 38 H 1.09006 * 109.48079 * 303.61417 * 20 19 18 39 39 H 1.09001 * 109.62354 * 65.08867 * 21 20 19 40 40 H 1.08998 * 109.62761 * 185.46412 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4488 2.8613 -0.0001 8 1 5.7865 2.3357 0.8931 9 6 6.0299 4.2767 -0.0093 10 6 5.9148 2.1191 -1.2261 11 1 5.1932 1.7400 -1.9347 12 6 7.2624 1.9251 -1.4439 13 7 8.1410 2.3872 -0.5815 14 14 7.8399 1.0045 -2.9633 15 1 7.3792 1.7199 -4.1803 16 1 9.3230 0.9308 -2.9635 17 1 7.2764 -0.3695 -2.9536 18 6 3.4436 3.6912 1.2457 19 6 1.9285 3.8877 1.1715 20 6 1.5781 4.7706 -0.0275 21 6 1.9851 4.0573 -1.3211 22 6 3.4487 3.6871 -1.2261 23 8 4.2206 3.9829 -2.1064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.6929 4.8135 0.8775 30 1 7.1185 4.2225 -0.0098 31 1 5.6922 4.8023 -0.9024 32 1 9.0892 2.2503 -0.7345 33 1 3.6922 3.1150 2.1369 34 1 3.9345 4.6632 1.2926 35 1 1.4423 2.9183 1.0618 36 1 1.5799 4.3664 2.0866 37 1 0.5046 4.9592 -0.0386 38 1 2.1130 5.7172 0.0495 39 1 1.3866 3.1548 -1.4455 40 1 1.8269 4.7214 -2.1708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709465327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:04 Heat of formation + Delta-G solvation = -150.359662 kcal Electronic energy + Delta-G solvation = -22687.085477 eV Core-core repulsion = 19466.143051 eV Total energy + Delta-G solvation = -3220.942426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31241 -40.37594 -37.77013 -37.34890 -35.89310 -33.52683 -32.48898 -30.57406 -29.48041 -27.34968 -25.11624 -24.21543 -22.83234 -22.60872 -21.65569 -19.77788 -18.51451 -18.41557 -17.53667 -17.19501 -16.87729 -16.41252 -15.60389 -15.44627 -15.23063 -14.97069 -14.60968 -14.12193 -13.93499 -13.78456 -13.74165 -13.57711 -13.36372 -12.91688 -12.80317 -12.64842 -12.53566 -12.42202 -12.21459 -12.12107 -11.99786 -11.87556 -11.47590 -11.42222 -11.20508 -11.04809 -10.78679 -10.48706 -9.93400 -8.05352 -6.07629 0.89836 1.30272 1.33418 1.39139 1.39922 1.86530 2.42733 3.15608 3.25234 3.69411 3.85097 3.93808 4.07188 4.09987 4.18706 4.24559 4.42616 4.49668 4.53852 4.58161 4.83356 4.93085 4.95255 4.97211 5.02327 5.13196 5.16169 5.19223 5.21468 5.26649 5.31854 5.35535 5.50623 5.58643 5.67395 5.88095 6.06865 6.34916 6.71931 6.86929 6.93526 7.50994 9.01028 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.008459 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.422820 B = 3309.161392 C = 3966.852143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 O -0.342 6.342 4 C 0.478 3.522 5 O -0.512 6.512 6 C -0.095 4.095 7 C 0.069 3.931 8 H 0.001 0.999 9 C -0.133 4.133 10 C -0.466 4.466 11 H 0.026 0.974 12 C 0.003 3.997 13 N -0.924 5.924 14 Si 0.937 3.063 15 H -0.278 1.278 16 H -0.276 1.276 17 H -0.281 1.281 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.101 4.101 21 C -0.161 4.161 22 C 0.363 3.637 23 O -0.453 6.453 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.257 0.743 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 2.463 4.431 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 O -0.259 6.259 4 C 0.320 3.680 5 O -0.398 6.398 6 C -0.097 4.097 7 C 0.051 3.949 8 H 0.019 0.981 9 C -0.191 4.191 10 C -0.504 4.504 11 H 0.045 0.955 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.764 3.236 15 H -0.204 1.204 16 H -0.201 1.201 17 H -0.207 1.207 18 C -0.143 4.143 19 C -0.166 4.166 20 C -0.139 4.139 21 C -0.198 4.198 22 C 0.237 3.763 23 O -0.324 6.324 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.293 2.297 3.971 19.830 hybrid contribution 1.405 -1.123 -0.903 2.012 sum -17.888 1.174 3.068 18.187 Atomic orbital electron populations 1.21790 0.89128 1.04301 1.04253 1.23307 0.97791 0.80116 1.01736 1.86564 1.22745 1.32620 1.84015 1.23257 0.80848 0.91671 0.72235 1.90697 1.61252 1.43464 1.44424 1.21617 0.98608 0.89748 0.99743 1.18401 0.86560 0.94260 0.95724 0.98059 1.21821 1.02801 0.96174 0.98262 1.20932 0.91235 1.32214 1.06048 0.95528 1.25482 0.97278 0.97450 0.99057 1.69962 1.01201 1.48327 1.37094 0.85925 0.77367 0.79124 0.81147 1.20364 1.20142 1.20696 1.21764 0.98815 1.00404 0.93336 1.21860 0.92642 1.02380 0.99721 1.21500 1.03464 0.97854 0.91041 1.22392 0.91513 1.03839 1.02055 1.25002 0.92019 0.75196 0.84084 1.90418 1.59408 1.44051 1.38527 0.90187 0.90939 0.88624 0.93054 0.91846 0.93948 0.92615 0.94526 0.93422 0.91225 0.89598 0.89281 0.88372 0.87341 0.91523 0.86976 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.29 71.98 0.74 -1.29 16 2 C 0.04 1.11 6.19 71.98 0.45 1.56 16 3 O -0.34 -10.32 5.70 -51.49 -0.29 -10.61 16 4 C 0.48 19.72 6.09 71.23 0.43 20.15 16 5 O -0.51 -26.06 14.43 21.97 0.32 -25.74 16 6 C -0.10 -3.91 0.29 -53.42 -0.02 -3.92 16 7 C 0.07 3.67 1.31 -11.54 -0.02 3.66 16 8 H 0.00 0.08 8.11 -2.39 -0.02 0.06 16 9 C -0.13 -6.76 8.33 71.98 0.60 -6.16 16 10 C -0.47 -28.28 5.40 25.60 0.14 -28.14 16 11 H 0.03 1.68 6.72 -2.91 -0.02 1.66 16 12 C 0.00 0.20 5.30 84.66 0.45 0.65 16 13 N -0.92 -57.95 11.32 21.45 0.24 -57.71 16 14 Si 0.94 49.56 29.54 68.60 2.03 51.59 16 15 H -0.28 -14.51 7.11 99.48 0.71 -13.81 16 16 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.28 -14.77 7.11 99.48 0.71 -14.06 16 18 C -0.11 -3.23 4.49 30.66 0.14 -3.09 16 19 C -0.13 -2.67 5.59 30.57 0.17 -2.50 16 20 C -0.10 -1.90 5.94 30.66 0.18 -1.72 16 21 C -0.16 -4.13 5.74 30.11 0.17 -3.96 16 22 C 0.36 14.25 5.14 29.46 0.15 14.40 16 23 O -0.45 -22.07 13.41 -1.44 -0.02 -22.09 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.04 1.79 6.32 -2.39 -0.02 1.78 16 30 H 0.05 3.19 6.07 -2.39 -0.01 3.18 16 31 H 0.04 1.87 5.81 -2.39 -0.01 1.86 16 32 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.56 6.16 -2.39 -0.01 2.55 16 35 H 0.09 1.87 5.27 -2.38 -0.01 1.86 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.11 2.62 6.95 -2.39 -0.02 2.61 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -78.45 306.94 6.89 -71.56 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.03 Total: 3.39 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 3.59 Total: -10.39 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.24 Total: -57.71 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: 0.00 Total: -58.44 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.03 Total: 51.59 kcal Total: -78.45 6.89 -71.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.803 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds