Wall clock time and date at job start Mon Mar 30 2020 07:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.46718 * 2 1 4 4 C 1.34234 * 116.99672 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99878 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99924 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.77902 * 179.51956 * 6 4 3 8 8 H 1.09004 * 109.46962 * 180.47816 * 7 6 4 9 9 C 1.52998 * 109.47309 * 60.47675 * 7 6 4 10 10 C 1.50697 * 109.46971 * 300.47310 * 7 6 4 11 11 H 1.07997 * 120.00534 * 359.97438 * 10 7 6 12 12 C 1.37886 * 119.99857 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00041 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99917 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46952 * 60.00185 * 14 12 10 16 16 H 1.48501 * 109.47365 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47322 * 300.00286 * 14 12 10 18 18 C 1.53232 * 109.62610 * 299.99361 * 6 4 3 19 19 C 1.52966 * 109.40429 * 65.08662 * 18 6 4 20 20 C 1.52961 * 109.81494 * 63.60126 * 19 18 6 21 21 C 1.53234 * 109.40125 * 296.40329 * 20 19 18 22 22 C 1.51267 * 108.54042 * 54.63035 * 21 20 19 23 23 O 1.20752 * 120.85215 * 128.67545 * 22 21 20 24 24 H 1.09000 * 109.47261 * 300.00299 * 1 2 3 25 25 H 1.09003 * 109.46949 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47261 * 239.99701 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99776 * 2 1 3 29 29 H 1.09003 * 109.47203 * 179.97438 * 9 7 6 30 30 H 1.08998 * 109.46827 * 299.99800 * 9 7 6 31 31 H 1.08998 * 109.47309 * 60.00188 * 9 7 6 32 32 H 0.97001 * 120.00038 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.48210 * 305.11210 * 18 6 4 34 34 H 1.08993 * 109.48488 * 185.06648 * 18 6 4 35 35 H 1.08999 * 109.41436 * 183.70687 * 19 18 6 36 36 H 1.09000 * 109.41061 * 303.49674 * 19 18 6 37 37 H 1.08999 * 109.48121 * 56.38116 * 20 19 18 38 38 H 1.08995 * 109.48005 * 176.42727 * 20 19 18 39 39 H 1.09003 * 109.62645 * 294.91070 * 21 20 19 40 40 H 1.09003 * 109.78339 * 174.43805 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4489 2.8656 0.0113 8 1 5.8600 3.8751 0.0202 9 6 5.9342 2.1284 -1.2384 10 6 5.9079 2.1255 1.2412 11 1 5.1823 1.7448 1.9446 12 6 7.2545 1.9353 1.4689 13 7 8.1382 2.4002 0.6131 14 14 7.8235 1.0185 2.9937 15 1 7.2638 -0.3570 2.9819 16 1 9.3068 0.9486 3.0047 17 1 7.3521 1.7343 4.2064 18 6 3.4501 3.6895 -1.2493 19 6 1.9339 3.8818 -1.1857 20 6 1.5728 4.7643 0.0104 21 6 1.9729 4.0526 1.3071 22 6 3.4382 3.6865 1.2225 23 8 4.2030 3.9840 2.1083 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 7.0230 2.0776 -1.2306 30 1 5.5231 1.1189 -1.2473 31 1 5.6022 2.6637 -2.1280 32 1 9.0855 2.2666 0.7735 33 1 3.7064 3.1135 -2.1386 34 1 3.9384 4.6630 -1.2932 35 1 1.5902 4.3580 -2.1040 36 1 1.4498 2.9111 -1.0790 37 1 2.1057 5.7123 -0.0633 38 1 0.4988 4.9499 0.0141 39 1 1.3760 3.1486 1.4278 40 1 1.8097 4.7152 2.1571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709465329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:08 Heat of formation + Delta-G solvation = -129.341309 kcal Electronic energy + Delta-G solvation = -22707.540295 eV Core-core repulsion = 19487.509293 eV Total energy + Delta-G solvation = -3220.031002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76934 -38.74577 -36.37982 -35.93206 -33.95840 -31.76263 -31.35629 -29.15518 -27.80177 -25.19702 -23.86455 -22.98258 -21.40817 -21.22960 -19.66754 -18.72358 -16.98067 -16.44760 -16.05177 -15.53793 -15.27193 -14.44925 -14.23114 -13.89535 -13.85661 -13.35634 -13.25120 -12.94006 -12.73515 -12.44985 -12.40256 -11.79879 -11.73956 -11.50796 -11.36610 -11.23623 -10.92122 -10.66353 -10.50481 -10.44989 -10.35342 -10.23731 -10.11715 -9.91020 -9.73455 -9.16565 -8.70528 -8.44983 -8.11045 -5.78465 -3.76391 2.43994 2.97689 3.29047 3.47764 3.48640 3.54104 4.59202 4.63072 5.01485 5.03795 5.05267 5.09722 5.17325 5.25602 5.39410 5.41237 5.55027 5.67452 5.76363 5.79360 5.84944 5.94362 5.97515 6.03915 6.16130 6.18046 6.24065 6.42788 6.57302 6.64681 6.91868 6.97710 7.25116 7.34068 7.82030 8.05966 8.20021 8.23961 8.53643 8.55622 9.13140 9.81517 11.29364 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.008218 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.201758 B = 3406.164910 C = 3824.399105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.472 3.528 5 O -0.454 6.454 6 C -0.084 4.084 7 C 0.071 3.929 8 H 0.041 0.959 9 C -0.151 4.151 10 C -0.466 4.466 11 H 0.046 0.954 12 C 0.058 3.942 13 N -0.900 5.900 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.279 1.279 18 C -0.105 4.105 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.170 4.170 22 C 0.363 3.637 23 O -0.403 6.403 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.004 0.996 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 0.975 -4.402 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.312 3.688 5 O -0.336 6.336 6 C -0.086 4.086 7 C 0.053 3.947 8 H 0.058 0.942 9 C -0.208 4.208 10 C -0.504 4.504 11 H 0.064 0.936 12 C -0.141 4.141 13 N -0.541 5.541 14 Si 0.716 3.284 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.205 1.205 18 C -0.143 4.143 19 C -0.175 4.175 20 C -0.143 4.143 21 C -0.208 4.208 22 C 0.233 3.767 23 O -0.271 6.271 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.812 0.805 -3.923 16.311 hybrid contribution 0.396 -0.769 0.809 1.185 sum -15.416 0.035 -3.113 15.727 Atomic orbital electron populations 1.21778 0.93238 1.02439 1.03149 1.22905 0.94757 0.81829 1.02392 1.86580 1.25819 1.30788 1.85098 1.23205 0.79599 0.92287 0.73670 1.90674 1.59321 1.42117 1.41477 1.21700 1.01936 0.88631 0.96294 1.18597 0.82331 0.97794 0.95987 0.94150 1.22081 1.04985 0.99370 0.94359 1.20741 0.91524 1.33423 1.04710 0.93563 1.24762 0.96754 0.96158 0.96392 1.69849 1.01044 1.47440 1.35804 0.86717 0.77163 0.80393 0.84095 1.20583 1.21482 1.20496 1.21657 0.95489 1.00795 0.96327 1.21880 0.96182 1.01757 0.97632 1.21418 1.00972 0.98498 0.93435 1.22367 0.96172 1.02707 0.99535 1.24364 0.89754 0.76848 0.85771 1.90463 1.58166 1.41641 1.36786 0.91722 0.91690 0.90837 0.91618 0.91635 0.89595 0.93151 0.97714 0.93348 0.90525 0.90449 0.91792 0.89284 0.91902 0.91389 0.88263 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.75 5.66 -39.27 -0.22 -5.98 16 4 C 0.47 9.55 5.80 36.00 0.21 9.76 16 5 O -0.45 -10.82 12.19 -18.75 -0.23 -11.05 16 6 C -0.08 -1.71 0.28 -156.42 -0.04 -1.75 16 7 C 0.07 1.82 1.38 -91.78 -0.13 1.69 16 8 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 9 C -0.15 -3.76 8.34 37.16 0.31 -3.45 16 10 C -0.47 -13.53 5.42 -34.44 -0.19 -13.71 16 11 H 0.05 1.39 6.73 -52.49 -0.35 1.04 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 13 N -0.90 -27.18 11.32 55.43 0.63 -26.55 16 14 Si 0.89 23.41 29.54 -169.99 -5.02 18.39 16 15 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.28 -7.36 7.11 56.52 0.40 -6.95 16 18 C -0.11 -1.69 4.17 -26.63 -0.11 -1.80 16 19 C -0.14 -1.72 5.59 -26.77 -0.15 -1.87 16 20 C -0.11 -1.25 5.94 -26.63 -0.16 -1.41 16 21 C -0.17 -2.46 5.73 -27.48 -0.16 -2.62 16 22 C 0.36 7.26 5.59 -28.48 -0.16 7.10 16 23 O -0.40 -9.80 15.35 6.01 0.09 -9.71 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.05 1.28 5.57 -51.93 -0.29 0.99 16 31 H 0.00 0.09 6.57 -51.93 -0.34 -0.26 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 1.22 6.77 -51.93 -0.35 0.87 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.13 5.27 -51.93 -0.27 0.86 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.35 6.91 -51.93 -0.36 0.99 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -33.45 307.14 -6.25 -39.70 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.07 Total: -2.99 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.06 Total: -6.45 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.63 Total: -26.55 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.36 Total: -26.73 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.45 -6.25 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.641 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds