Wall clock time and date at job start Mon Mar 30 2020 07:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.46718 * 2 1 4 4 C 1.34234 * 116.99672 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99878 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99924 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.77902 * 179.51956 * 6 4 3 8 8 H 1.09004 * 109.46962 * 180.47816 * 7 6 4 9 9 C 1.52998 * 109.47309 * 60.47675 * 7 6 4 10 10 C 1.50697 * 109.46971 * 300.47310 * 7 6 4 11 11 H 1.07997 * 120.00534 * 359.97438 * 10 7 6 12 12 C 1.37886 * 119.99857 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00041 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99917 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46952 * 60.00185 * 14 12 10 16 16 H 1.48501 * 109.47365 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47322 * 300.00286 * 14 12 10 18 18 C 1.53232 * 109.62610 * 299.99361 * 6 4 3 19 19 C 1.52966 * 109.40429 * 65.08662 * 18 6 4 20 20 C 1.52961 * 109.81494 * 63.60126 * 19 18 6 21 21 C 1.53234 * 109.40125 * 296.40329 * 20 19 18 22 22 C 1.51267 * 108.54042 * 54.63035 * 21 20 19 23 23 O 1.20752 * 120.85215 * 128.67545 * 22 21 20 24 24 H 1.09000 * 109.47261 * 300.00299 * 1 2 3 25 25 H 1.09003 * 109.46949 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47261 * 239.99701 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99776 * 2 1 3 29 29 H 1.09003 * 109.47203 * 179.97438 * 9 7 6 30 30 H 1.08998 * 109.46827 * 299.99800 * 9 7 6 31 31 H 1.08998 * 109.47309 * 60.00188 * 9 7 6 32 32 H 0.97001 * 120.00038 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.48210 * 305.11210 * 18 6 4 34 34 H 1.08993 * 109.48488 * 185.06648 * 18 6 4 35 35 H 1.08999 * 109.41436 * 183.70687 * 19 18 6 36 36 H 1.09000 * 109.41061 * 303.49674 * 19 18 6 37 37 H 1.08999 * 109.48121 * 56.38116 * 20 19 18 38 38 H 1.08995 * 109.48005 * 176.42727 * 20 19 18 39 39 H 1.09003 * 109.62645 * 294.91070 * 21 20 19 40 40 H 1.09003 * 109.78339 * 174.43805 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4489 2.8656 0.0113 8 1 5.8600 3.8751 0.0202 9 6 5.9342 2.1284 -1.2384 10 6 5.9079 2.1255 1.2412 11 1 5.1823 1.7448 1.9446 12 6 7.2545 1.9353 1.4689 13 7 8.1382 2.4002 0.6131 14 14 7.8235 1.0185 2.9937 15 1 7.2638 -0.3570 2.9819 16 1 9.3068 0.9486 3.0047 17 1 7.3521 1.7343 4.2064 18 6 3.4501 3.6895 -1.2493 19 6 1.9339 3.8818 -1.1857 20 6 1.5728 4.7643 0.0104 21 6 1.9729 4.0526 1.3071 22 6 3.4382 3.6865 1.2225 23 8 4.2030 3.9840 2.1083 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 7.0230 2.0776 -1.2306 30 1 5.5231 1.1189 -1.2473 31 1 5.6022 2.6637 -2.1280 32 1 9.0855 2.2666 0.7735 33 1 3.7064 3.1135 -2.1386 34 1 3.9384 4.6630 -1.2932 35 1 1.5902 4.3580 -2.1040 36 1 1.4498 2.9111 -1.0790 37 1 2.1057 5.7123 -0.0633 38 1 0.4988 4.9499 0.0141 39 1 1.3760 3.1486 1.4278 40 1 1.8097 4.7152 2.1571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709465329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:07 Heat of formation + Delta-G solvation = -149.911399 kcal Electronic energy + Delta-G solvation = -22708.432281 eV Core-core repulsion = 19487.509293 eV Total energy + Delta-G solvation = -3220.922988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31538 -40.28424 -37.92014 -37.35469 -35.79700 -33.51527 -32.47051 -30.57785 -29.42981 -27.31595 -25.13584 -24.37466 -22.84048 -22.52968 -21.27635 -20.23269 -18.55110 -18.31174 -17.58942 -17.00406 -16.87703 -16.39503 -15.58888 -15.31334 -15.17386 -14.93012 -14.65042 -14.36621 -14.01394 -14.00623 -13.59755 -13.38572 -13.23090 -12.98963 -12.85910 -12.64402 -12.55437 -12.42311 -12.21559 -12.13177 -11.97078 -11.81200 -11.57288 -11.44422 -11.16401 -10.98795 -10.69136 -10.37488 -10.04776 -8.05173 -6.07569 0.88684 1.30431 1.33589 1.40011 1.41820 1.87562 2.42854 3.14813 3.25087 3.69284 3.84684 3.94251 4.09246 4.10099 4.19839 4.23820 4.44622 4.51369 4.54075 4.56434 4.88190 4.89977 4.97217 5.00330 5.03722 5.13262 5.14598 5.19364 5.20718 5.27248 5.31400 5.37230 5.51529 5.59446 5.66962 5.93614 6.07710 6.36021 6.67521 6.87031 6.98439 7.51105 9.01096 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.008218 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.201758 B = 3406.164910 C = 3824.399105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 O -0.344 6.344 4 C 0.480 3.520 5 O -0.501 6.501 6 C -0.095 4.095 7 C 0.069 3.931 8 H 0.007 0.993 9 C -0.137 4.137 10 C -0.466 4.466 11 H 0.027 0.973 12 C 0.003 3.997 13 N -0.924 5.924 14 Si 0.937 3.063 15 H -0.279 1.279 16 H -0.277 1.277 17 H -0.280 1.280 18 C -0.103 4.103 19 C -0.129 4.129 20 C -0.101 4.101 21 C -0.160 4.160 22 C 0.359 3.641 23 O -0.462 6.462 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.164 1.313 -5.128 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 O -0.262 6.262 4 C 0.322 3.678 5 O -0.387 6.387 6 C -0.097 4.097 7 C 0.051 3.949 8 H 0.025 0.975 9 C -0.195 4.195 10 C -0.505 4.505 11 H 0.045 0.955 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.764 3.236 15 H -0.205 1.205 16 H -0.202 1.202 17 H -0.205 1.205 18 C -0.141 4.141 19 C -0.166 4.166 20 C -0.139 4.139 21 C -0.197 4.197 22 C 0.233 3.767 23 O -0.334 6.334 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.361 1.149 -4.664 19.948 hybrid contribution 1.420 -0.907 1.013 1.966 sum -17.941 0.242 -3.651 18.311 Atomic orbital electron populations 1.21792 0.89287 1.04253 1.04204 1.23296 0.97679 0.80093 1.01778 1.86559 1.22876 1.32637 1.84089 1.23055 0.80780 0.91447 0.72482 1.90657 1.60763 1.43326 1.43941 1.21606 0.98637 0.90117 0.99351 1.18397 0.86544 0.95179 0.94784 0.97507 1.21870 1.02625 0.99335 0.95649 1.20938 0.91204 1.32874 1.05467 0.95496 1.25486 0.97246 0.97467 0.99053 1.69967 1.01040 1.48559 1.37005 0.85926 0.77347 0.79164 0.81121 1.20504 1.20171 1.20539 1.21729 0.98719 0.99952 0.93698 1.21867 0.92643 1.02440 0.99666 1.21500 1.03495 0.97828 0.91046 1.22394 0.91345 1.03929 1.02029 1.25192 0.92213 0.75050 0.84225 1.90441 1.60314 1.44176 1.38434 0.91021 0.90213 0.88671 0.91723 0.93049 0.92901 0.93969 0.94532 0.93433 0.90530 0.90451 0.88351 0.89129 0.91687 0.87268 0.86780 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.05 1.11 6.19 71.98 0.45 1.55 16 3 O -0.34 -10.18 5.66 -51.46 -0.29 -10.47 16 4 C 0.48 19.33 5.80 71.23 0.41 19.74 16 5 O -0.50 -24.47 12.19 21.95 0.27 -24.20 16 6 C -0.10 -3.90 0.28 -53.42 -0.01 -3.91 16 7 C 0.07 3.68 1.38 -11.54 -0.02 3.67 16 8 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 9 C -0.14 -7.07 8.34 71.98 0.60 -6.47 16 10 C -0.47 -28.27 5.42 25.60 0.14 -28.13 16 11 H 0.03 1.69 6.73 -2.91 -0.02 1.67 16 12 C 0.00 0.21 5.30 84.66 0.45 0.66 16 13 N -0.92 -57.96 11.32 21.45 0.24 -57.71 16 14 Si 0.94 49.52 29.54 68.60 2.03 51.55 16 15 H -0.28 -14.58 7.11 99.48 0.71 -13.88 16 16 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.28 -14.65 7.11 99.48 0.71 -13.95 16 18 C -0.10 -3.15 4.17 30.66 0.13 -3.02 16 19 C -0.13 -2.67 5.59 30.57 0.17 -2.49 16 20 C -0.10 -1.93 5.94 30.66 0.18 -1.74 16 21 C -0.16 -4.16 5.73 30.11 0.17 -3.99 16 22 C 0.36 14.35 5.59 29.46 0.16 14.51 16 23 O -0.46 -23.25 15.35 -1.43 -0.02 -23.27 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.05 1.41 8.13 -2.39 -0.02 1.40 16 29 H 0.05 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.04 2.22 5.57 -2.39 -0.01 2.20 16 31 H 0.04 1.58 6.57 -2.39 -0.02 1.56 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.08 2.30 6.77 -2.38 -0.02 2.29 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.88 5.27 -2.39 -0.01 1.86 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 2.68 6.91 -2.39 -0.02 2.66 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -78.12 307.14 6.83 -71.30 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.03 Total: 3.69 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 3.57 Total: -10.89 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.24 Total: -57.71 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.05 Total: -57.93 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.55 kcal Total: -78.12 6.83 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709465329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.614 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds