Wall clock time and date at job start Mon Mar 30 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48503 * 109.47008 * 239.99893 * 3 2 1 5 5 H 1.48503 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46873 * 120.00023 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.62678 * 59.61899 * 13 12 11 15 15 O 1.20831 * 119.99973 * 119.99749 * 14 13 12 16 16 O 1.34225 * 120.00103 * 299.99968 * 14 13 12 17 17 C 1.53237 * 109.62425 * 180.02562 * 13 12 11 18 18 C 1.52957 * 109.40618 * 65.08294 * 17 13 12 19 19 C 1.52959 * 109.81469 * 63.60054 * 18 17 13 20 20 C 1.53233 * 109.40568 * 296.40062 * 19 18 17 21 21 C 1.51268 * 108.53611 * 54.62645 * 20 19 18 22 22 O 1.20758 * 120.84639 * 128.67388 * 21 20 19 23 23 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 26 26 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 27 27 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 28 28 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 29 29 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 31 31 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 32 32 H 0.96705 * 117.00608 * 180.02562 * 16 14 13 33 33 H 1.08996 * 109.47894 * 185.06627 * 17 13 12 34 34 H 1.08998 * 109.47637 * 305.09286 * 17 13 12 35 35 H 1.08999 * 109.41589 * 183.70424 * 18 17 13 36 36 H 1.09003 * 109.41468 * 303.56399 * 18 17 13 37 37 H 1.08991 * 109.48385 * 56.38112 * 19 18 17 38 38 H 1.09001 * 109.47965 * 176.41066 * 19 18 17 39 39 H 1.08991 * 109.62963 * 174.34631 * 20 19 18 40 40 H 1.09007 * 109.62356 * 294.72085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 6 1.7098 -7.4750 -0.0031 14 6 0.8354 -7.5534 -1.2279 15 8 0.9926 -8.4467 -2.0262 16 8 -0.1180 -6.6310 -1.4321 17 6 2.7025 -8.6423 -0.0031 18 6 3.4938 -8.6365 1.3058 19 6 2.5483 -8.8745 2.4844 20 6 1.5499 -7.7159 2.5781 21 6 0.8559 -7.5699 1.2419 22 8 -0.3489 -7.5297 1.1711 23 1 -0.4850 0.8399 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6042 -0.8905 28 1 0.8541 -5.0446 -0.8914 29 1 0.8535 -5.0450 0.8885 30 1 3.1015 -6.0926 0.8881 31 1 3.1014 -6.0917 -0.8918 32 1 -0.6542 -6.7231 -2.2316 33 1 2.1582 -9.5822 -0.0948 34 1 3.3885 -8.5360 -0.8434 35 1 4.2448 -9.4261 1.2787 36 1 3.9866 -7.6718 1.4270 37 1 2.0078 -9.8089 2.3339 38 1 3.1254 -8.9329 3.4073 39 1 0.8128 -7.9295 3.3521 40 1 2.0797 -6.7948 2.8213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709497742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:58 Heat of formation + Delta-G solvation = -164.695381 kcal Electronic energy + Delta-G solvation = -21264.927683 eV Core-core repulsion = 18043.363614 eV Total energy + Delta-G solvation = -3221.564069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40169 -39.25358 -37.08074 -36.13478 -35.04149 -33.15565 -31.69879 -29.82657 -28.00777 -25.03012 -24.50176 -22.23366 -22.04853 -21.40738 -20.04493 -18.57328 -17.91907 -17.21106 -16.25713 -16.08344 -15.61156 -14.99699 -14.76789 -14.55341 -14.41173 -14.21973 -13.62031 -13.41576 -13.17407 -12.67141 -12.55809 -12.33652 -11.98267 -11.79574 -11.58042 -11.36207 -11.30691 -11.01279 -11.01119 -10.87823 -10.56415 -10.52336 -10.44735 -10.24114 -9.58570 -9.50523 -9.23926 -8.98779 -8.31016 -5.95885 -3.98542 1.78447 2.13757 2.93743 3.34604 3.39154 3.41287 3.77304 4.29744 4.43555 4.48352 4.58283 4.62228 4.73221 5.02612 5.15205 5.16427 5.28102 5.39164 5.42141 5.52341 5.59043 5.59726 5.65165 5.74407 5.81751 5.90757 6.06753 6.13572 6.26626 6.53436 6.55492 6.81262 7.02246 7.18909 7.28915 7.72854 7.88757 7.92330 8.05270 8.47148 9.08979 9.65194 11.15328 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.004331 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.171581 B = 6463.601319 C = 6801.010787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.101 4.101 14 C 0.502 3.498 15 O -0.520 6.520 16 O -0.486 6.486 17 C -0.096 4.096 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.166 4.166 21 C 0.378 3.622 22 O -0.434 6.434 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -19.085 3.134 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.171 4.171 12 C -0.142 4.142 13 C -0.103 4.103 14 C 0.344 3.656 15 O -0.409 6.409 16 O -0.296 6.296 17 C -0.134 4.134 18 C -0.165 4.165 19 C -0.153 4.153 20 C -0.204 4.204 21 C 0.251 3.749 22 O -0.305 6.305 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.491 -19.141 3.236 20.174 hybrid contribution 0.099 0.966 -0.596 1.139 sum 5.590 -18.175 2.640 19.198 Atomic orbital electron populations 1.69957 1.06047 1.26624 1.50837 1.25029 0.94819 0.99180 0.95424 0.86686 0.79598 0.83301 0.78559 1.20285 1.21309 1.20288 1.21247 0.92931 0.91230 1.50561 0.92844 1.19077 0.94004 0.91268 0.97214 1.21601 0.98966 0.93924 1.00012 1.22024 0.97600 0.94019 1.03491 1.21786 0.98317 0.89939 1.04114 1.21563 0.96246 1.01347 0.91149 1.22755 0.78370 0.78128 0.86347 1.90684 1.69050 1.34890 1.46312 1.84762 1.45399 1.50988 1.48479 1.21535 0.96760 0.95840 0.99250 1.21683 0.98047 1.03503 0.93250 1.21563 0.96841 0.97448 0.99457 1.22303 1.00647 1.01781 0.95676 1.24414 0.88984 0.70333 0.91219 1.90470 1.16462 1.34893 1.88679 0.92991 0.96636 0.96735 0.93594 0.93514 0.89801 0.92590 0.89545 0.90291 0.73589 0.90641 0.89742 0.90454 0.90355 0.91432 0.90248 0.88777 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.17 5.15 -26.74 -0.14 -2.30 16 11 C -0.13 -2.26 4.45 -26.74 -0.12 -2.38 16 12 C -0.10 -1.31 3.95 -26.73 -0.11 -1.41 16 13 C -0.10 -1.24 0.51 -156.41 -0.08 -1.32 16 14 C 0.50 7.27 6.46 36.00 0.23 7.50 16 15 O -0.52 -8.31 16.69 -18.75 -0.31 -8.62 16 16 O -0.49 -6.87 9.67 -44.44 -0.43 -7.30 16 17 C -0.10 -0.92 4.06 -26.63 -0.11 -1.03 16 18 C -0.13 -0.89 5.65 -26.77 -0.15 -1.04 16 19 C -0.12 -0.79 5.94 -26.63 -0.16 -0.95 16 20 C -0.17 -1.53 5.89 -27.48 -0.16 -1.70 16 21 C 0.38 4.88 4.70 -28.48 -0.13 4.75 16 22 O -0.43 -7.16 16.44 -7.98 -0.13 -7.29 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.50 5.33 -51.93 -0.28 1.22 16 29 H 0.06 0.99 7.25 -51.93 -0.38 0.62 16 30 H 0.09 0.91 5.98 -51.93 -0.31 0.60 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.41 3.96 9.10 45.56 0.41 4.38 16 33 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.52 6.41 -51.93 -0.33 0.19 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 0.91 7.80 -51.93 -0.41 0.50 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -34.78 320.56 -7.27 -42.05 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.47 Total: -0.69 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.47 Total: -13.14 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.87 Total: -23.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.78 -7.27 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709497742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.649 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds