Wall clock time and date at job start Mon Mar 30 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48503 * 109.47008 * 239.99893 * 3 2 1 5 5 H 1.48503 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46873 * 120.00023 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.62678 * 59.61899 * 13 12 11 15 15 O 1.20831 * 119.99973 * 119.99749 * 14 13 12 16 16 O 1.34225 * 120.00103 * 299.99968 * 14 13 12 17 17 C 1.53237 * 109.62425 * 180.02562 * 13 12 11 18 18 C 1.52957 * 109.40618 * 65.08294 * 17 13 12 19 19 C 1.52959 * 109.81469 * 63.60054 * 18 17 13 20 20 C 1.53233 * 109.40568 * 296.40062 * 19 18 17 21 21 C 1.51268 * 108.53611 * 54.62645 * 20 19 18 22 22 O 1.20758 * 120.84639 * 128.67388 * 21 20 19 23 23 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 26 26 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 27 27 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 28 28 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 29 29 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 31 31 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 32 32 H 0.96705 * 117.00608 * 180.02562 * 16 14 13 33 33 H 1.08996 * 109.47894 * 185.06627 * 17 13 12 34 34 H 1.08998 * 109.47637 * 305.09286 * 17 13 12 35 35 H 1.08999 * 109.41589 * 183.70424 * 18 17 13 36 36 H 1.09003 * 109.41468 * 303.56399 * 18 17 13 37 37 H 1.08991 * 109.48385 * 56.38112 * 19 18 17 38 38 H 1.09001 * 109.47965 * 176.41066 * 19 18 17 39 39 H 1.08991 * 109.62963 * 174.34631 * 20 19 18 40 40 H 1.09007 * 109.62356 * 294.72085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 6 1.7098 -7.4750 -0.0031 14 6 0.8354 -7.5534 -1.2279 15 8 0.9926 -8.4467 -2.0262 16 8 -0.1180 -6.6310 -1.4321 17 6 2.7025 -8.6423 -0.0031 18 6 3.4938 -8.6365 1.3058 19 6 2.5483 -8.8745 2.4844 20 6 1.5499 -7.7159 2.5781 21 6 0.8559 -7.5699 1.2419 22 8 -0.3489 -7.5297 1.1711 23 1 -0.4850 0.8399 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6042 -0.8905 28 1 0.8541 -5.0446 -0.8914 29 1 0.8535 -5.0450 0.8885 30 1 3.1015 -6.0926 0.8881 31 1 3.1014 -6.0917 -0.8918 32 1 -0.6542 -6.7231 -2.2316 33 1 2.1582 -9.5822 -0.0948 34 1 3.3885 -8.5360 -0.8434 35 1 4.2448 -9.4261 1.2787 36 1 3.9866 -7.6718 1.4270 37 1 2.0078 -9.8089 2.3339 38 1 3.1254 -8.9329 3.4073 39 1 0.8128 -7.9295 3.3521 40 1 2.0797 -6.7948 2.8213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709497742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:58 Heat of formation + Delta-G solvation = -186.363865 kcal Electronic energy + Delta-G solvation = -21265.867299 eV Core-core repulsion = 18043.363614 eV Total energy + Delta-G solvation = -3222.503685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42643 -40.33493 -38.04955 -37.35128 -36.45674 -34.82982 -33.13931 -30.88733 -29.40882 -26.61725 -25.51017 -23.66190 -23.06950 -22.28897 -21.72031 -19.48714 -19.04808 -18.44998 -18.21485 -17.19177 -16.63420 -16.45137 -16.09865 -15.77645 -15.48413 -15.34556 -14.57503 -14.48188 -14.21432 -13.98618 -13.88000 -13.86833 -13.29302 -13.09129 -12.81622 -12.75238 -12.53293 -12.32412 -12.19325 -12.04427 -11.95929 -11.80901 -11.60008 -11.41386 -11.28584 -11.17221 -10.89944 -10.53448 -10.44888 -8.17785 -6.29847 0.79909 1.01600 1.40746 1.44269 1.52146 1.96841 2.42345 2.85381 3.14981 3.42375 3.57869 3.75790 4.00295 4.04671 4.16739 4.23421 4.29011 4.39737 4.45896 4.64455 4.70300 4.75738 4.89787 4.92298 4.95355 5.03757 5.09915 5.22004 5.23822 5.29496 5.33865 5.43120 5.49295 5.50619 5.61518 5.80301 5.89763 6.26914 6.32363 6.87350 6.88613 7.39862 8.93994 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.004331 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.171581 B = 6463.601319 C = 6801.010787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.127 4.127 12 C -0.094 4.094 13 C -0.102 4.102 14 C 0.494 3.506 15 O -0.541 6.541 16 O -0.500 6.500 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.111 4.111 20 C -0.165 4.165 21 C 0.373 3.627 22 O -0.482 6.482 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 -19.464 4.113 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.164 4.164 12 C -0.131 4.131 13 C -0.104 4.104 14 C 0.338 3.662 15 O -0.431 6.431 16 O -0.312 6.312 17 C -0.131 4.131 18 C -0.160 4.160 19 C -0.148 4.148 20 C -0.202 4.202 21 C 0.249 3.751 22 O -0.357 6.357 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.280 0.720 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.556 -19.534 4.212 21.738 hybrid contribution -0.938 1.080 -0.940 1.711 sum 7.618 -18.455 3.272 20.231 Atomic orbital electron populations 1.70116 1.08022 1.27759 1.51851 1.26046 0.95723 1.03574 0.94779 0.85485 0.78227 0.77915 0.79324 1.19067 1.21105 1.18850 1.21734 0.93683 0.92330 1.50315 0.91738 1.19021 0.94589 0.93691 0.94209 1.21411 0.97739 0.93020 1.01012 1.21859 0.98041 0.94345 1.02152 1.21716 0.97307 0.87865 1.06260 1.21727 0.96369 1.02437 0.89846 1.23361 0.78341 0.77640 0.86884 1.90661 1.69701 1.35547 1.47237 1.84751 1.45763 1.51216 1.49502 1.21606 0.96179 0.93932 1.01351 1.21727 0.97961 1.05052 0.91285 1.21607 0.96355 0.96052 1.00807 1.22403 1.01146 1.03563 0.93116 1.25135 0.88524 0.68454 0.92979 1.90456 1.18459 1.37308 1.89444 0.92894 0.99827 0.99755 0.92070 0.92756 0.91351 0.94066 0.86447 0.89080 0.72046 0.91486 0.89236 0.88105 0.89256 0.91570 0.87542 0.88673 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 11 C -0.13 -4.25 4.45 30.59 0.14 -4.11 16 12 C -0.09 -2.17 3.95 30.59 0.12 -2.05 16 13 C -0.10 -2.38 0.51 -53.42 -0.03 -2.41 16 14 C 0.49 14.48 6.46 71.23 0.46 14.94 16 15 O -0.54 -17.41 16.69 21.95 0.37 -17.04 16 16 O -0.50 -14.83 9.67 -46.40 -0.45 -15.28 16 17 C -0.09 -1.56 4.06 30.66 0.12 -1.44 16 18 C -0.12 -1.21 5.65 30.57 0.17 -1.04 16 19 C -0.11 -1.13 5.94 30.66 0.18 -0.95 16 20 C -0.16 -2.68 5.89 30.11 0.18 -2.51 16 21 C 0.37 9.44 4.70 29.46 0.14 9.58 16 22 O -0.48 -16.43 16.44 11.93 0.20 -16.23 16 23 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 24 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.51 5.33 -2.39 -0.01 2.50 16 29 H 0.04 1.49 7.25 -2.39 -0.02 1.47 16 30 H 0.12 1.99 5.98 -2.39 -0.01 1.98 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.42 8.87 9.10 -74.05 -0.67 8.20 16 33 H 0.07 1.25 7.96 -2.39 -0.02 1.23 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.73 6.41 -2.39 -0.02 0.71 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.67 7.80 -2.38 -0.02 1.65 16 Total: -1.00 -77.69 320.56 5.27 -72.41 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.36 Total: 10.87 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 2.49 Total: -22.93 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.28 Total: -58.24 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: 0.11 Total: -48.55 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -77.69 5.27 -72.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709497742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.951 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds