Wall clock time and date at job start Mon Mar 30 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47096 * 240.00158 * 2 1 3 5 5 C 1.50704 * 109.47153 * 59.99740 * 4 2 1 6 6 H 1.07997 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99793 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46885 * 90.00107 * 9 7 5 11 11 H 1.48502 * 109.47132 * 209.99967 * 9 7 5 12 12 H 1.48495 * 109.47046 * 330.00178 * 9 7 5 13 13 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 14 14 N 1.46904 * 109.46950 * 300.00123 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 C 1.35143 * 127.24759 * 89.70473 * 17 16 15 19 19 C 1.37804 * 114.75762 * 179.86854 * 18 17 16 20 20 N 1.30081 * 116.88611 * 0.44994 * 19 18 17 21 21 S 1.69606 * 107.14812 * 359.75574 * 20 19 18 22 22 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 23 23 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 24 24 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 27 27 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 28 28 H 1.08995 * 109.47051 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46901 * 300.00144 * 4 2 1 30 30 H 0.97005 * 119.99618 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47319 * 180.02562 * 13 2 1 32 32 H 1.09003 * 109.47435 * 59.99376 * 13 2 1 33 33 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 35 35 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 36 36 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 37 37 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 38 38 H 1.08004 * 122.62036 * 0.04476 * 18 17 16 39 39 H 1.08003 * 121.55648 * 180.21155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5521 -3.8526 9 14 1.2470 0.3979 -5.2572 10 1 2.2250 1.4395 -5.6619 11 1 1.0817 -0.5816 -6.3611 12 1 -0.0610 1.0354 -4.9610 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.4933 0.0540 4.8955 17 6 1.9765 -0.6293 6.1487 18 6 3.1200 -0.3831 6.8257 19 6 3.3059 -1.1621 7.9471 20 7 2.3807 -2.0361 8.2162 21 16 1.1922 -1.8922 7.0148 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7208 -1.2495 29 1 1.6766 -1.7489 -1.2493 30 1 2.8599 -1.8834 -4.7337 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2493 33 1 1.8198 0.9436 2.4401 34 1 1.6588 -1.7221 3.6873 35 1 3.1118 -0.6939 3.6869 36 1 1.8568 1.0815 4.8783 37 1 0.4035 0.0539 4.8792 38 1 3.8311 0.3676 6.5138 39 1 4.1808 -1.0548 8.5712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709814393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:25 Heat of formation + Delta-G solvation = 15.362035 kcal Electronic energy + Delta-G solvation = -17743.130196 eV Core-core repulsion = 15004.419624 eV Total energy + Delta-G solvation = -2738.710572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.09597 -37.79433 -35.38324 -32.91542 -31.88676 -28.93216 -26.93997 -26.35169 -25.57836 -24.25010 -22.62285 -21.86750 -20.11309 -18.07534 -17.76809 -16.27155 -15.96658 -15.73125 -14.97847 -14.49481 -14.19205 -14.07822 -13.81505 -13.30898 -13.13799 -12.71548 -12.50026 -12.27900 -12.00640 -11.73865 -11.65188 -11.11295 -10.95550 -10.83109 -10.78137 -10.68836 -10.50476 -10.28450 -10.15000 -9.70353 -9.68723 -9.03255 -8.98249 -8.84146 -8.32386 -8.18693 -5.96888 -3.97144 0.45409 1.25511 1.65859 2.22429 3.32717 3.39544 3.42333 4.07914 4.47409 4.57297 4.79947 4.94753 4.99297 5.06711 5.38950 5.41005 5.44135 5.59812 5.65674 5.72241 5.84451 5.89363 5.96542 6.22065 6.30485 6.33281 6.48098 6.64009 6.76314 6.81426 7.16193 7.19161 7.24829 7.34334 7.59704 7.69573 7.84319 8.03294 8.47427 9.08279 9.65780 11.14790 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.051227 B = 0.002884 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.456284 B = 9705.446503 C = 9759.841095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.686 5.686 15 C 0.064 3.936 16 C -0.046 4.046 17 C -0.153 4.153 18 C -0.214 4.214 19 C 0.091 3.909 20 N -0.468 5.468 21 S 0.255 5.745 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.339 0.661 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 3.487 20.703 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.318 5.318 15 C -0.067 4.067 16 C -0.086 4.086 17 C -0.284 4.284 18 C -0.249 4.249 19 C -0.106 4.106 20 N -0.289 5.289 21 S 0.407 5.593 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.173 0.827 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.995 1.456 21.334 21.477 hybrid contribution 2.174 1.924 -1.394 3.220 sum 0.179 3.380 19.940 20.225 Atomic orbital electron populations 1.21601 0.94941 1.00619 1.00190 1.20636 0.95916 0.95005 0.94356 1.21773 0.99684 0.96740 1.00446 1.19127 0.95883 0.95228 0.90172 1.21235 1.30763 1.11928 0.90604 0.92276 1.25019 0.95427 0.95101 0.99073 1.69972 1.37364 1.23129 1.23299 0.86661 0.79240 0.79406 0.83100 1.20834 1.21367 1.19899 1.22122 0.96403 0.98181 0.89118 1.60569 1.63699 1.06452 1.01088 1.21905 0.97198 0.98665 0.88908 1.20132 1.02166 0.98606 0.87718 1.25546 0.99006 1.01853 1.01963 1.21355 0.99905 1.05990 0.97654 1.22833 0.98911 0.92187 0.96716 1.76793 1.06363 1.24677 1.21042 1.84204 1.27855 1.30915 1.16326 0.93880 0.92665 0.94155 0.94114 0.91675 0.94796 0.96937 0.96657 0.93157 0.95761 0.91472 0.84218 0.90867 0.95164 0.89608 0.89020 0.82691 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.13 -2.31 7.89 37.16 0.29 -2.01 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.07 1.17 4.65 -3.82 -0.02 1.15 16 14 N -0.69 -9.14 5.71 -113.78 -0.65 -9.79 16 15 C 0.06 0.71 5.67 -3.83 -0.02 0.69 16 16 C -0.05 -0.42 6.05 -27.89 -0.17 -0.58 16 17 C -0.15 -1.42 5.85 -35.41 -0.21 -1.63 16 18 C -0.21 -1.80 10.17 -40.84 -0.42 -2.21 16 19 C 0.09 0.79 11.27 -18.45 -0.21 0.58 16 20 N -0.47 -5.20 12.09 28.86 0.35 -4.85 16 21 S 0.26 2.59 23.72 -107.50 -2.55 0.04 16 22 H 0.04 0.72 7.60 -51.93 -0.39 0.32 16 23 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 27 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.34 4.21 6.77 -39.29 -0.27 3.94 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -30.00 328.73 -9.39 -39.39 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.20 Total: -1.18 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.01 Total: -18.98 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.44 Total: -40.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.55 Total: 0.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.00 -9.39 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709814393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.753 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds