Wall clock time and date at job start Mon Mar 30 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47473 * 210.00042 * 9 7 5 12 12 H 1.48498 * 109.47290 * 330.00321 * 9 7 5 13 13 S 1.81000 * 109.47277 * 120.00133 * 2 1 3 14 14 C 1.76206 * 99.99929 * 295.00301 * 13 2 1 15 15 N 1.29893 * 122.95496 * 0.02562 * 14 13 2 16 16 C 1.46235 * 108.93340 * 178.44477 * 15 14 13 17 17 H 1.08995 * 105.33420 * 255.28316 * 16 15 14 18 18 C 1.49469 * 114.25700 * 139.33377 * 16 15 14 19 19 C 1.52524 * 113.24274 * 266.14712 * 18 16 15 20 20 C 1.53428 * 107.67650 * 305.14790 * 19 18 16 21 21 C 1.52249 * 108.08427 * 68.25361 * 20 19 18 22 22 C 1.49712 * 112.65388 * 301.75487 * 21 20 19 23 23 H 1.09000 * 109.08650 * 268.88803 * 22 21 20 24 24 N 1.37030 * 122.96083 * 179.73134 * 14 13 2 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 28 28 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 29 29 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 30 30 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 31 31 H 1.09003 * 108.72518 * 27.11840 * 18 16 15 32 32 H 1.08995 * 108.72485 * 145.29551 * 18 16 15 33 33 H 1.09002 * 109.81586 * 64.69306 * 19 18 16 34 34 H 1.09001 * 109.81471 * 185.53952 * 19 18 16 35 35 H 1.08994 * 109.73930 * 187.90368 * 20 19 18 36 36 H 1.09004 * 109.73747 * 308.61016 * 20 19 18 37 37 H 1.09001 * 108.81315 * 62.15315 * 21 20 19 38 38 H 1.08992 * 108.81449 * 180.55226 * 21 20 19 39 39 H 0.96998 * 126.02523 * 355.35140 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.7000 -2.2146 -1.7254 11 1 6.5297 -1.0684 -3.8556 12 1 6.5268 0.2033 -1.7908 13 16 2.1333 -0.8533 1.4778 14 6 1.5438 0.2422 2.7257 15 7 0.8738 1.3224 2.4587 16 6 0.5081 1.9766 3.7143 17 1 -0.5531 1.7680 3.8496 18 6 0.6363 3.4656 3.6911 19 6 1.9810 3.9622 4.2120 20 6 2.1827 3.3751 5.6151 21 6 2.3755 1.8713 5.4750 22 6 1.2183 1.2019 4.8011 23 1 0.5018 0.8818 5.5575 24 7 1.7468 0.0265 4.0636 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1369 30 1 4.0607 -2.2423 -4.0363 31 1 0.5087 3.8118 2.6654 32 1 -0.1552 3.8946 4.3055 33 1 2.7803 3.6251 3.5520 34 1 1.9784 5.0510 4.2628 35 1 3.0654 3.8181 6.0762 36 1 1.3049 3.5780 6.2287 37 1 3.2740 1.6855 4.8864 38 1 2.5102 1.4403 6.4669 39 1 2.1637 -0.7551 4.4587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710020239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:28 Heat of formation + Delta-G solvation = 11.387662 kcal Electronic energy + Delta-G solvation = -18616.873901 eV Core-core repulsion = 15877.990987 eV Total energy + Delta-G solvation = -2738.882914 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59977 -35.96701 -34.52459 -32.75279 -31.95397 -29.55283 -29.29537 -27.32966 -23.23418 -23.14256 -22.61466 -21.33397 -20.19049 -18.90324 -17.76310 -16.31822 -16.00682 -15.43474 -14.84593 -14.64203 -14.43725 -14.20378 -13.31536 -13.02544 -12.85301 -12.70962 -12.51640 -12.14000 -11.74356 -11.67781 -11.43641 -11.32846 -10.95301 -10.88756 -10.72115 -10.63287 -10.55391 -10.40515 -10.36686 -9.54261 -9.39451 -9.35013 -9.09193 -8.36022 -8.01955 -7.08971 -6.00971 -4.02711 1.91343 2.65037 3.03157 3.34219 3.40221 3.44585 3.75728 4.44564 4.47318 4.62217 4.82850 5.05807 5.10919 5.14546 5.26090 5.36358 5.44614 5.57346 5.68829 5.81997 5.87545 5.88921 5.99685 6.02965 6.05874 6.13011 6.25303 6.28034 6.35226 6.56041 6.69624 6.73310 6.96336 7.56087 7.62622 7.78043 7.96607 8.07324 8.34250 9.02481 9.61311 11.10194 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.004933 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.275018 B = 5674.431036 C = 6038.656739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.089 0.911 4 C 0.035 3.965 5 C -0.519 4.519 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 S -0.032 6.032 14 C 0.347 3.653 15 N -0.567 5.567 16 C 0.066 3.934 17 H 0.058 0.942 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.129 4.129 22 C 0.131 3.869 23 H 0.073 0.927 24 N -0.746 5.746 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.261 0.739 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 7.267 17.413 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 H 0.108 0.892 4 C -0.004 4.004 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 S 0.200 5.800 14 C -0.037 4.037 15 N -0.302 5.302 16 C -0.047 4.047 17 H 0.076 0.924 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.167 4.167 22 C 0.023 3.977 23 H 0.091 0.909 24 N -0.392 5.392 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.989 6.764 16.638 18.640 hybrid contribution 0.728 0.429 0.798 1.162 sum -4.261 7.193 17.435 19.336 Atomic orbital electron populations 1.22125 0.94429 1.01543 1.02531 1.23498 0.97292 1.02277 0.94282 0.89218 1.19112 0.96413 0.95610 0.89234 1.21269 0.91580 1.34599 1.08320 0.91895 1.24984 0.98423 0.95198 0.95574 1.69961 1.35579 1.35861 1.12015 0.86591 0.85791 0.78593 0.77086 1.20608 1.21304 1.19783 1.86197 1.68286 1.29034 0.96490 1.25822 0.92691 0.96798 0.88432 1.75263 1.23705 1.09113 1.22124 1.20872 0.99186 0.95324 0.89357 0.92420 1.20551 0.97230 0.93081 1.02441 1.21536 0.98096 0.99763 0.96292 1.21425 1.01629 0.94731 0.97422 1.21219 0.98964 0.96107 1.00451 1.21101 0.95289 0.86808 0.94468 0.90875 1.46454 1.67030 1.22158 1.03569 0.92494 0.93097 0.91096 0.95642 0.94407 0.92951 0.90597 0.92156 0.91640 0.91759 0.91784 0.91848 0.91214 0.92041 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.99 37.16 0.33 -2.41 16 2 C -0.04 -0.94 2.20 -26.73 -0.06 -1.00 16 3 H 0.09 2.00 8.08 -51.92 -0.42 1.59 16 4 C 0.03 0.89 4.44 -27.88 -0.12 0.76 16 5 C -0.52 -14.36 8.53 -34.44 -0.29 -14.66 16 6 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 S -0.03 -0.62 21.06 -107.50 -2.26 -2.89 16 14 C 0.35 5.91 7.77 -89.03 -0.69 5.22 16 15 N -0.57 -9.74 8.46 -57.52 -0.49 -10.23 16 16 C 0.07 0.91 3.27 -70.73 -0.23 0.68 16 17 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 18 C -0.09 -1.13 5.55 -28.72 -0.16 -1.28 16 19 C -0.12 -1.30 6.05 -26.75 -0.16 -1.46 16 20 C -0.11 -1.06 5.97 -26.89 -0.16 -1.22 16 21 C -0.13 -1.34 5.42 -28.74 -0.16 -1.49 16 22 C 0.13 1.56 3.86 -69.38 -0.27 1.29 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 N -0.75 -10.16 5.98 -55.94 -0.33 -10.50 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.29 5.79 -51.93 -0.30 0.99 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 1.01 8.08 -51.93 -0.42 0.60 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.41 4.82 8.96 -40.82 -0.37 4.45 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -29.58 319.42 -11.14 -40.72 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.51 Total: 1.17 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.07 Total: -13.98 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.26 Total: -2.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.58 -11.14 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.106 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds