Wall clock time and date at job start Mon Mar 30 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47473 * 210.00042 * 9 7 5 12 12 H 1.48498 * 109.47290 * 330.00321 * 9 7 5 13 13 S 1.81000 * 109.47277 * 120.00133 * 2 1 3 14 14 C 1.76206 * 99.99929 * 295.00301 * 13 2 1 15 15 N 1.29893 * 122.95496 * 0.02562 * 14 13 2 16 16 C 1.46235 * 108.93340 * 178.44477 * 15 14 13 17 17 H 1.08995 * 105.33420 * 255.28316 * 16 15 14 18 18 C 1.49469 * 114.25700 * 139.33377 * 16 15 14 19 19 C 1.52524 * 113.24274 * 266.14712 * 18 16 15 20 20 C 1.53428 * 107.67650 * 305.14790 * 19 18 16 21 21 C 1.52249 * 108.08427 * 68.25361 * 20 19 18 22 22 C 1.49712 * 112.65388 * 301.75487 * 21 20 19 23 23 H 1.09000 * 109.08650 * 268.88803 * 22 21 20 24 24 N 1.37030 * 122.96083 * 179.73134 * 14 13 2 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 28 28 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 29 29 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 30 30 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 31 31 H 1.09003 * 108.72518 * 27.11840 * 18 16 15 32 32 H 1.08995 * 108.72485 * 145.29551 * 18 16 15 33 33 H 1.09002 * 109.81586 * 64.69306 * 19 18 16 34 34 H 1.09001 * 109.81471 * 185.53952 * 19 18 16 35 35 H 1.08994 * 109.73930 * 187.90368 * 20 19 18 36 36 H 1.09004 * 109.73747 * 308.61016 * 20 19 18 37 37 H 1.09001 * 108.81315 * 62.15315 * 21 20 19 38 38 H 1.08992 * 108.81449 * 180.55226 * 21 20 19 39 39 H 0.96998 * 126.02523 * 355.35140 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.7000 -2.2146 -1.7254 11 1 6.5297 -1.0684 -3.8556 12 1 6.5268 0.2033 -1.7908 13 16 2.1333 -0.8533 1.4778 14 6 1.5438 0.2422 2.7257 15 7 0.8738 1.3224 2.4587 16 6 0.5081 1.9766 3.7143 17 1 -0.5531 1.7680 3.8496 18 6 0.6363 3.4656 3.6911 19 6 1.9810 3.9622 4.2120 20 6 2.1827 3.3751 5.6151 21 6 2.3755 1.8713 5.4750 22 6 1.2183 1.2019 4.8011 23 1 0.5018 0.8818 5.5575 24 7 1.7468 0.0265 4.0636 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1369 30 1 4.0607 -2.2423 -4.0363 31 1 0.5087 3.8118 2.6654 32 1 -0.1552 3.8946 4.3055 33 1 2.7803 3.6251 3.5520 34 1 1.9784 5.0510 4.2628 35 1 3.0654 3.8181 6.0762 36 1 1.3049 3.5780 6.2287 37 1 3.2740 1.6855 4.8864 38 1 2.5102 1.4403 6.4669 39 1 2.1637 -0.7551 4.4587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710020239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:28 Heat of formation + Delta-G solvation = -5.878521 kcal Electronic energy + Delta-G solvation = -18617.622619 eV Core-core repulsion = 15877.990987 eV Total energy + Delta-G solvation = -2739.631631 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67038 -36.94464 -36.42722 -34.17303 -33.62342 -30.61719 -30.32525 -29.25083 -25.23411 -24.14394 -23.55158 -22.66396 -21.79875 -19.87571 -18.97579 -18.48825 -16.95392 -16.90770 -16.53919 -15.91728 -15.88989 -15.11277 -14.78160 -14.44401 -14.18548 -13.94066 -13.70174 -13.57314 -13.30678 -13.04989 -12.95936 -12.71115 -12.51533 -12.41493 -12.31641 -11.98679 -11.75401 -11.54588 -11.45851 -11.34661 -11.20232 -10.98667 -10.56045 -10.52652 -9.21115 -8.57695 -8.18569 -6.27407 0.46194 1.34918 1.41420 1.41609 1.43720 1.53247 2.42732 2.68403 3.16283 3.49926 3.73711 3.97512 4.16307 4.17289 4.23575 4.26228 4.31709 4.34412 4.56690 4.61883 4.69451 4.80670 4.94537 4.97266 5.00774 5.08465 5.12023 5.20869 5.22582 5.34884 5.36952 5.41474 5.47263 5.53274 5.57155 5.79164 6.19747 6.65608 6.84513 6.90497 7.40570 8.93160 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.004933 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.275018 B = 5674.431036 C = 6038.656739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 H 0.074 0.926 4 C 0.043 3.957 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 S -0.050 6.050 14 C 0.346 3.654 15 N -0.592 5.592 16 C 0.059 3.941 17 H 0.059 0.941 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.125 4.125 22 C 0.132 3.868 23 H 0.099 0.901 24 N -0.737 5.737 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.004 0.996 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 8.201 20.035 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 H 0.092 0.908 4 C 0.005 3.995 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.191 1.191 13 S 0.181 5.819 14 C -0.041 4.041 15 N -0.328 5.328 16 C -0.054 4.054 17 H 0.077 0.923 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.164 4.164 22 C 0.025 3.975 23 H 0.117 0.883 24 N -0.384 5.384 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.760 7.701 19.281 21.301 hybrid contribution 0.595 0.191 0.049 0.626 sum -4.166 7.892 19.329 21.290 Atomic orbital electron populations 1.22019 0.92432 1.01907 1.03068 1.23158 0.98842 1.00750 0.93794 0.90763 1.18899 0.95569 0.94489 0.90575 1.21552 0.92767 1.34323 1.08264 0.92090 1.25830 1.03260 0.94827 0.95202 1.70078 1.37484 1.36810 1.12688 0.85556 0.80000 0.78897 0.77315 1.19769 1.20724 1.19107 1.86023 1.69362 1.29725 0.96750 1.25362 0.93285 0.96435 0.89010 1.75199 1.23521 1.09281 1.24804 1.21091 0.99462 0.96350 0.88509 0.92290 1.20568 0.98799 0.91990 1.01817 1.21522 0.96348 1.00842 0.96862 1.21425 1.03192 0.93575 0.96419 1.21199 0.97049 0.97121 1.01010 1.21295 0.96267 0.85763 0.94130 0.88303 1.46497 1.66512 1.23056 1.02340 0.92108 0.92756 0.90320 0.97767 0.96704 0.92752 0.92798 0.89452 0.94719 0.90128 0.90541 0.89738 0.93603 0.89623 0.73822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.99 71.98 0.65 -4.46 16 2 C -0.04 -1.57 2.20 30.59 0.07 -1.51 16 3 H 0.07 3.43 8.08 -2.39 -0.02 3.41 16 4 C 0.04 2.27 4.44 29.85 0.13 2.41 16 5 C -0.53 -30.05 8.53 25.60 0.22 -29.83 16 6 H 0.06 3.41 7.60 -2.91 -0.02 3.38 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 S -0.05 -1.98 21.06 -56.49 -1.19 -3.17 16 14 C 0.35 11.56 7.77 179.79 1.40 12.96 16 15 N -0.59 -20.07 8.46 -335.90 -2.84 -22.91 16 16 C 0.06 1.52 3.27 43.32 0.14 1.66 16 17 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 18 C -0.09 -2.05 5.55 29.31 0.16 -1.89 16 19 C -0.12 -2.34 6.05 30.58 0.19 -2.16 16 20 C -0.11 -1.63 5.97 30.49 0.18 -1.45 16 21 C -0.13 -2.22 5.42 29.29 0.16 -2.07 16 22 C 0.13 2.78 3.86 42.96 0.17 2.95 16 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 24 N -0.74 -18.84 5.98 -330.88 -1.98 -20.82 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.98 8.14 -2.38 -0.02 1.97 16 27 H 0.08 2.85 5.79 -2.39 -0.01 2.84 16 28 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.01 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.98 8.10 -2.38 -0.02 0.96 16 37 H 0.05 1.05 7.89 -2.39 -0.02 1.03 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.42 9.09 8.96 -92.71 -0.83 8.26 16 Total: -1.00 -64.62 319.42 0.41 -64.21 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.19 Total: 14.37 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.92 Total: -22.52 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.54 Total: -99.64 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -1.19 Total: -3.17 kcal Total: -64.62 0.41 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.330 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds