Wall clock time and date at job start Mon Mar 30 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.31558 * 123.35779 * 359.70563 * 14 13 2 16 16 C 1.44791 * 107.19404 * 186.59642 * 15 14 13 17 17 H 1.08997 * 108.54419 * 88.45413 * 16 15 14 18 18 C 1.50881 * 120.72719 * 215.63941 * 16 15 14 19 19 C 1.53984 * 106.86833 * 180.12636 * 18 16 15 20 20 C 1.52500 * 111.96651 * 303.78356 * 19 18 16 21 21 C 1.54140 * 111.79831 * 53.44376 * 20 19 18 22 22 C 1.51437 * 106.31547 * 302.11536 * 21 20 19 23 23 H 1.09004 * 110.15491 * 306.19586 * 22 21 20 24 24 N 1.38874 * 123.36100 * 179.97438 * 14 13 2 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 29 29 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.97039 * 60.78715 * 18 16 15 32 32 H 1.08998 * 110.04446 * 299.50765 * 18 16 15 33 33 H 1.09002 * 108.98032 * 183.14585 * 19 18 16 34 34 H 1.08996 * 108.98221 * 64.42572 * 19 18 16 35 35 H 1.08997 * 109.01659 * 292.85019 * 20 19 18 36 36 H 1.08995 * 108.95226 * 173.99582 * 20 19 18 37 37 H 1.09001 * 110.08286 * 182.91342 * 21 20 19 38 38 H 1.09002 * 110.08449 * 61.31009 * 21 20 19 39 39 H 0.97001 * 127.61528 * 18.17551 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 5.5420 -1.1100 -2.4075 9 14 3.3019 -2.1132 -3.6925 10 1 2.9466 -1.1695 -4.7827 11 1 4.1581 -3.1980 -4.2363 12 1 2.0626 -2.6997 -3.1220 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8700 1.3414 2.4639 16 6 0.7000 2.0477 3.7164 17 1 1.5597 2.7010 3.8654 18 6 -0.5659 2.8176 4.0016 19 6 -0.4059 3.4375 5.4020 20 6 -0.1089 2.3826 6.4624 21 6 1.1010 1.5087 6.0772 22 6 0.7636 0.8798 4.7415 23 1 -0.1947 0.3638 4.8007 24 7 1.7490 0.0344 4.0834 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 6.0266 -1.5200 -3.1409 31 1 -1.4224 2.1436 3.9884 32 1 -0.7000 3.6043 3.2592 33 1 -1.3268 3.9571 5.6670 34 1 0.4119 4.1578 5.3795 35 1 -0.9840 1.7441 6.5830 36 1 0.1001 2.8810 7.4089 37 1 1.2566 0.7332 6.8273 38 1 1.9945 2.1262 5.9849 39 1 2.4046 -0.5458 4.5012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710020240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:31 Heat of formation + Delta-G solvation = 20.699587 kcal Electronic energy + Delta-G solvation = -18452.190454 eV Core-core repulsion = 15713.711336 eV Total energy + Delta-G solvation = -2738.479118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64927 -36.21076 -34.65898 -32.40187 -31.97422 -29.46964 -29.13513 -27.85417 -23.11569 -23.03347 -22.13200 -20.88543 -20.27237 -20.04383 -17.46503 -16.71633 -15.72164 -15.66806 -14.91671 -14.88366 -14.40214 -14.20845 -13.32070 -13.22135 -12.89272 -12.57855 -12.37903 -12.23033 -12.05132 -12.00828 -11.72099 -11.22970 -11.19433 -11.05184 -10.86697 -10.69097 -10.66028 -10.48074 -9.90818 -9.67850 -9.43685 -9.25977 -9.20997 -8.53926 -8.05485 -7.12439 -6.03467 -4.02089 1.87473 2.42285 2.92546 3.31217 3.38995 3.41774 3.68949 4.34327 4.45020 4.55142 4.63415 4.98903 5.04527 5.14100 5.21445 5.28459 5.30526 5.40424 5.60550 5.72032 5.74065 5.84162 5.86165 5.89227 5.94740 6.02860 6.12152 6.14035 6.31540 6.51188 6.52916 6.56080 6.85586 7.05458 7.23242 7.71787 7.75974 7.99139 8.51672 9.03328 9.57442 11.09342 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041532 B = 0.004253 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.009561 B = 6581.512901 C = 6833.690081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 H 0.095 0.905 4 C -0.001 4.001 5 C -0.522 4.522 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.265 1.265 13 S -0.013 6.013 14 C 0.346 3.654 15 N -0.561 5.561 16 C 0.052 3.948 17 H 0.067 0.933 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.113 4.113 22 C 0.104 3.896 23 H 0.068 0.932 24 N -0.745 5.745 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.263 0.737 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 4.828 16.519 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 H 0.114 0.886 4 C -0.040 4.040 5 C -0.560 4.560 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.189 1.189 13 S 0.219 5.781 14 C -0.037 4.037 15 N -0.295 5.295 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.005 4.005 23 H 0.086 0.914 24 N -0.393 5.393 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.668 4.352 15.812 20.127 hybrid contribution -0.380 0.146 0.134 0.429 sum -12.048 4.497 15.946 20.485 Atomic orbital electron populations 1.22165 0.94222 1.01634 1.02907 1.23284 0.97254 1.02631 0.93990 0.88638 1.19578 0.97945 0.95619 0.90897 1.21160 0.89232 1.35416 1.10186 0.90084 1.24980 0.94690 0.95719 0.97700 1.69907 1.06481 1.45052 1.32272 0.86871 0.80380 0.80088 0.82573 1.20221 1.21312 1.18915 1.86217 1.67716 1.28245 0.95903 1.26705 0.92796 0.96073 0.88159 1.75292 1.26118 1.05198 1.22876 1.22220 0.98508 0.95713 0.89774 0.91558 1.21118 0.96548 0.99530 0.96145 1.21591 1.01829 0.97982 0.94306 1.21538 0.97645 0.97448 0.98582 1.21590 0.99032 0.98914 0.95630 1.22084 0.91884 0.91580 0.94968 0.91429 1.45489 1.39904 1.50506 1.03441 0.92416 0.93033 0.90685 0.94934 0.95726 0.92714 0.91713 0.90988 0.91593 0.91989 0.91904 0.91538 0.91487 0.91085 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.99 37.16 0.33 -2.31 16 2 C -0.04 -0.87 2.21 -26.74 -0.06 -0.93 16 3 H 0.10 2.09 8.09 -51.92 -0.42 1.67 16 4 C 0.00 -0.04 3.51 -27.88 -0.10 -0.13 16 5 C -0.52 -14.56 9.09 -34.44 -0.31 -14.87 16 6 H 0.08 2.45 7.84 -52.49 -0.41 2.04 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 13 S -0.01 -0.25 21.06 -107.50 -2.26 -2.51 16 14 C 0.35 5.93 7.59 -85.88 -0.65 5.28 16 15 N -0.56 -9.73 8.88 -54.64 -0.49 -10.22 16 16 C 0.05 0.73 3.07 -68.56 -0.21 0.52 16 17 H 0.07 0.99 7.74 -51.93 -0.40 0.59 16 18 C -0.10 -1.07 6.04 -27.28 -0.16 -1.23 16 19 C -0.12 -1.02 5.81 -26.47 -0.15 -1.17 16 20 C -0.11 -0.89 5.81 -26.39 -0.15 -1.05 16 21 C -0.11 -1.04 6.04 -26.92 -0.16 -1.21 16 22 C 0.10 1.26 3.19 -67.88 -0.22 1.04 16 23 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 24 N -0.75 -10.36 6.70 -53.92 -0.36 -10.72 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.31 5.80 -51.93 -0.30 1.01 16 28 H 0.03 0.75 7.58 -51.93 -0.39 0.36 16 29 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 39 H 0.42 4.99 8.96 -40.82 -0.37 4.63 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -30.35 316.11 -10.64 -40.99 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.45 Total: 1.78 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.95 Total: -14.11 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.07 Total: -47.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.26 Total: -2.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.35 -10.64 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.694 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds