Wall clock time and date at job start Mon Mar 30 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.31558 * 123.35779 * 359.70563 * 14 13 2 16 16 C 1.44791 * 107.19404 * 186.59642 * 15 14 13 17 17 H 1.08997 * 108.54419 * 88.45413 * 16 15 14 18 18 C 1.50881 * 120.72719 * 215.63941 * 16 15 14 19 19 C 1.53984 * 106.86833 * 180.12636 * 18 16 15 20 20 C 1.52500 * 111.96651 * 303.78356 * 19 18 16 21 21 C 1.54140 * 111.79831 * 53.44376 * 20 19 18 22 22 C 1.51437 * 106.31547 * 302.11536 * 21 20 19 23 23 H 1.09004 * 110.15491 * 306.19586 * 22 21 20 24 24 N 1.38874 * 123.36100 * 179.97438 * 14 13 2 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 29 29 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.97039 * 60.78715 * 18 16 15 32 32 H 1.08998 * 110.04446 * 299.50765 * 18 16 15 33 33 H 1.09002 * 108.98032 * 183.14585 * 19 18 16 34 34 H 1.08996 * 108.98221 * 64.42572 * 19 18 16 35 35 H 1.08997 * 109.01659 * 292.85019 * 20 19 18 36 36 H 1.08995 * 108.95226 * 173.99582 * 20 19 18 37 37 H 1.09001 * 110.08286 * 182.91342 * 21 20 19 38 38 H 1.09002 * 110.08449 * 61.31009 * 21 20 19 39 39 H 0.97001 * 127.61528 * 18.17551 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 5.5420 -1.1100 -2.4075 9 14 3.3019 -2.1132 -3.6925 10 1 2.9466 -1.1695 -4.7827 11 1 4.1581 -3.1980 -4.2363 12 1 2.0626 -2.6997 -3.1220 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8700 1.3414 2.4639 16 6 0.7000 2.0477 3.7164 17 1 1.5597 2.7010 3.8654 18 6 -0.5659 2.8176 4.0016 19 6 -0.4059 3.4375 5.4020 20 6 -0.1089 2.3826 6.4624 21 6 1.1010 1.5087 6.0772 22 6 0.7636 0.8798 4.7415 23 1 -0.1947 0.3638 4.8007 24 7 1.7490 0.0344 4.0834 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 6.0266 -1.5200 -3.1409 31 1 -1.4224 2.1436 3.9884 32 1 -0.7000 3.6043 3.2592 33 1 -1.3268 3.9571 5.6670 34 1 0.4119 4.1578 5.3795 35 1 -0.9840 1.7441 6.5830 36 1 0.1001 2.8810 7.4089 37 1 1.2566 0.7332 6.8273 38 1 1.9945 2.1262 5.9849 39 1 2.4046 -0.5458 4.5012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710020240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:31 Heat of formation + Delta-G solvation = 1.578399 kcal Electronic energy + Delta-G solvation = -18453.019611 eV Core-core repulsion = 15713.711336 eV Total energy + Delta-G solvation = -2739.308275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73027 -37.12775 -36.46725 -34.18522 -33.32641 -30.51065 -30.19831 -29.55923 -24.92592 -24.15437 -23.09535 -22.14361 -21.72538 -21.03538 -18.88830 -18.69409 -17.02901 -16.82886 -16.41051 -16.08429 -15.74172 -15.29759 -14.84890 -14.30331 -14.20647 -14.05909 -13.94604 -13.48791 -13.43754 -13.07473 -13.03515 -12.72753 -12.52510 -12.25464 -12.08297 -11.85110 -11.73364 -11.62781 -11.50811 -11.43002 -11.37357 -11.01617 -10.71711 -10.38337 -9.28612 -8.61594 -8.23915 -6.28286 0.43079 1.09471 1.38266 1.39134 1.40838 1.51843 2.39077 2.59072 3.11116 3.37321 3.73819 3.88572 4.08189 4.16798 4.17542 4.26645 4.31473 4.38339 4.41059 4.56906 4.64862 4.75996 4.91047 4.93481 5.01428 5.04123 5.13035 5.13575 5.16266 5.18654 5.28784 5.34968 5.39257 5.47361 5.50922 5.63999 6.30491 6.53453 6.78474 6.86382 7.34689 8.91998 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041532 B = 0.004253 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.009561 B = 6581.512901 C = 6833.690081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 H 0.072 0.928 4 C 0.003 3.997 5 C -0.525 4.525 6 H 0.040 0.960 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.244 1.244 13 S -0.043 6.043 14 C 0.344 3.656 15 N -0.583 5.583 16 C 0.043 3.957 17 H 0.053 0.947 18 C -0.091 4.091 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.109 3.891 23 H 0.069 0.931 24 N -0.738 5.738 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 4.688 17.663 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 H 0.091 0.909 4 C -0.036 4.036 5 C -0.563 4.563 6 H 0.058 0.942 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.766 3.234 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.167 1.167 13 S 0.189 5.811 14 C -0.041 4.041 15 N -0.318 5.318 16 C -0.071 4.071 17 H 0.071 0.929 18 C -0.130 4.130 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.146 4.146 22 C 0.002 3.998 23 H 0.087 0.913 24 N -0.387 5.387 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -14.092 4.220 16.982 22.467 hybrid contribution 0.417 0.288 -0.113 0.519 sum -13.675 4.508 16.869 22.178 Atomic orbital electron populations 1.22064 0.91544 1.02542 1.03572 1.23089 0.99267 1.00842 0.93392 0.90933 1.19489 0.94906 0.96334 0.92869 1.21377 0.91610 1.34339 1.08952 0.94176 1.25920 0.95502 0.96864 1.00508 1.70065 1.08504 1.46803 1.33561 0.85763 0.79540 0.78761 0.79288 1.19118 1.21185 1.16728 1.86128 1.69071 1.29133 0.96797 1.26326 0.93172 0.95862 0.88785 1.75236 1.25907 1.05339 1.25270 1.22410 0.99461 0.96271 0.88981 0.92913 1.21139 0.95027 0.99000 0.97822 1.21578 1.02811 0.98149 0.92700 1.21547 0.97123 0.97149 0.99028 1.21615 0.99598 0.99324 0.94087 1.22206 0.91451 0.90349 0.95843 0.91321 1.45556 1.40174 1.50619 1.02333 0.91144 0.91917 0.90596 0.93917 0.95183 0.92591 0.91606 0.91812 0.89670 0.92145 0.91081 0.89441 0.89785 0.91651 0.73443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.99 71.98 0.65 -4.03 16 2 C -0.04 -1.50 2.21 30.59 0.07 -1.43 16 3 H 0.07 3.28 8.09 -2.40 -0.02 3.26 16 4 C 0.00 0.13 3.51 29.85 0.10 0.23 16 5 C -0.52 -30.00 9.09 25.60 0.23 -29.77 16 6 H 0.04 2.56 7.84 -2.91 -0.02 2.53 16 7 C 0.01 0.53 5.47 84.66 0.46 0.99 16 8 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 9 Si 0.94 43.82 27.47 68.60 1.88 45.70 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 13 S -0.04 -1.69 21.06 -56.49 -1.19 -2.88 16 14 C 0.34 11.79 7.59 178.69 1.36 13.15 16 15 N -0.58 -20.22 8.88 -326.78 -2.90 -23.13 16 16 C 0.04 1.16 3.07 45.49 0.14 1.30 16 17 H 0.05 1.58 7.74 -2.39 -0.02 1.56 16 18 C -0.09 -1.93 6.04 30.24 0.18 -1.74 16 19 C -0.11 -1.66 5.81 30.76 0.18 -1.48 16 20 C -0.11 -1.36 5.81 30.81 0.18 -1.18 16 21 C -0.11 -1.72 6.04 30.47 0.18 -1.53 16 22 C 0.11 2.49 3.19 45.53 0.15 2.64 16 23 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 24 N -0.74 -19.98 6.70 -324.49 -2.17 -22.15 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.57 5.80 -2.39 -0.01 2.56 16 28 H 0.04 1.91 7.58 -2.38 -0.02 1.89 16 29 H 0.03 1.38 7.19 -2.39 -0.02 1.36 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.14 7.88 -2.39 -0.02 1.12 16 39 H 0.42 9.86 8.96 -92.71 -0.83 9.03 16 Total: -1.00 -67.00 316.11 -0.06 -67.06 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.14 Total: 17.61 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.88 Total: -22.86 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -4.78 Total: -104.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -1.19 Total: -2.88 kcal Total: -67.00 -0.06 -67.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.636 kcal (2) G-P(sol) polarization free energy of solvation -66.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds