Wall clock time and date at job start Mon Mar 30 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.27869 * 60.63852 * 9 7 2 11 11 C 1.54960 * 110.30441 * 182.82706 * 9 7 2 12 12 C 1.55340 * 100.95647 * 155.27567 * 11 9 7 13 13 C 1.54250 * 102.19938 * 325.98390 * 12 11 9 14 14 C 1.52802 * 109.39195 * 140.95628 * 13 12 11 15 15 C 1.53019 * 109.56109 * 179.59885 * 14 13 12 16 16 C 1.53013 * 109.44698 * 300.23616 * 15 14 13 17 17 C 1.52960 * 109.44979 * 60.09497 * 16 15 14 18 18 C 1.52826 * 109.37776 * 261.63523 * 13 12 11 19 19 O 1.43695 * 109.42858 * 179.97438 * 17 16 15 20 20 C 1.44800 * 104.79794 * 215.95474 * 19 17 16 21 21 C 1.54920 * 101.73214 * 36.03593 * 20 19 17 22 22 O 1.43310 * 109.63620 * 60.60841 * 17 16 15 23 23 O 1.43042 * 107.76454 * 21.27933 * 13 12 11 24 24 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 25 25 H 1.08999 * 111.12840 * 273.19786 * 11 9 7 26 26 H 1.08998 * 111.12410 * 37.35378 * 11 9 7 27 27 H 1.09009 * 110.85528 * 207.80971 * 12 11 9 28 28 H 1.09001 * 111.03819 * 84.24251 * 12 11 9 29 29 H 1.09002 * 109.45663 * 299.62668 * 14 13 12 30 30 H 1.09008 * 109.45460 * 59.58812 * 14 13 12 31 31 H 1.08997 * 109.47112 * 60.22665 * 15 14 13 32 32 H 1.08995 * 109.47257 * 180.23577 * 15 14 13 33 33 H 1.09007 * 109.47293 * 180.08647 * 16 15 14 34 34 H 1.08997 * 109.47470 * 300.09084 * 16 15 14 35 35 H 1.09002 * 109.45880 * 300.81949 * 18 13 12 36 36 H 1.08999 * 109.46315 * 60.78090 * 18 13 12 37 37 H 1.08996 * 110.98139 * 277.92128 * 20 19 17 38 38 H 1.09002 * 111.00697 * 154.15761 * 20 19 17 39 39 H 1.09003 * 110.69777 * 206.06384 * 21 20 19 40 40 H 1.09004 * 110.84372 * 82.93215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8897 -0.6928 0.8899 11 6 4.0494 -2.6454 -0.0733 12 6 5.4508 -2.4101 -0.7009 13 6 5.1902 -1.2161 -1.6421 14 6 6.3832 -0.2626 -1.5942 15 6 6.1330 0.9186 -2.5344 16 6 5.9447 0.4021 -3.9623 17 6 4.7454 -0.5463 -4.0069 18 6 4.9843 -1.7291 -3.0668 19 8 4.5686 -1.0305 -5.3482 20 6 3.1342 -1.1307 -5.5192 21 6 2.6344 0.0927 -4.7107 22 8 3.5615 0.1554 -3.6071 23 8 4.0099 -0.5497 -1.1850 24 1 -0.4849 0.8401 -0.0004 25 1 4.1330 -3.0834 0.9213 26 1 3.4275 -3.2629 -0.7214 27 1 5.7755 -3.2849 -1.2644 28 1 6.1830 -2.1492 0.0634 29 1 6.5137 0.1049 -0.5763 30 1 7.2834 -0.7914 -1.9075 31 1 5.2353 1.4502 -2.2189 32 1 6.9866 1.5956 -2.5023 33 1 5.7680 1.2433 -4.6327 34 1 6.8417 -0.1312 -4.2771 35 1 5.8716 -2.2748 -3.3881 36 1 4.1206 -2.3935 -3.0924 37 1 2.7545 -2.0602 -5.0950 38 1 2.8589 -1.0427 -6.5702 39 1 1.6186 -0.0720 -4.3513 40 1 2.6867 1.0015 -5.3104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712736731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:09 Heat of formation + Delta-G solvation = -135.784449 kcal Electronic energy + Delta-G solvation = -23154.120756 eV Core-core repulsion = 19933.810358 eV Total energy + Delta-G solvation = -3220.310397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56469 -38.72143 -35.29632 -34.45950 -32.39981 -31.26490 -30.25787 -29.97734 -27.62328 -26.46706 -23.36118 -22.81063 -21.99107 -20.54016 -20.21793 -18.75434 -16.81253 -16.69602 -16.33413 -15.45258 -15.02710 -14.90312 -14.48884 -14.03926 -13.87884 -13.25105 -13.13694 -12.70283 -12.50731 -12.42685 -12.28840 -12.11560 -11.85829 -11.79541 -11.39200 -11.16729 -10.89466 -10.70057 -10.67008 -10.39354 -10.12149 -10.02280 -9.74206 -9.68496 -9.51982 -9.20994 -8.89181 -8.41914 -8.01466 -5.99737 -4.06787 3.48900 3.54626 3.74641 3.85291 4.35973 4.67147 4.71822 4.89708 5.03141 5.14240 5.22630 5.31676 5.36732 5.45889 5.50769 5.53270 5.56179 5.67415 5.77603 5.87224 5.89499 5.95702 6.00266 6.08452 6.10283 6.22763 6.28041 6.31442 6.45482 6.48886 6.50718 6.65081 6.70167 6.83964 6.85428 7.33749 7.61489 7.74497 8.52281 8.54379 9.01303 9.66563 11.10739 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.010236 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.082233 B = 2734.876232 C = 3200.129471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.087 3.913 3 Si 0.866 3.134 4 H -0.292 1.292 5 H -0.211 1.211 6 H -0.296 1.296 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.169 3.831 10 H 0.022 0.978 11 C -0.134 4.134 12 C -0.149 4.149 13 C 0.107 3.893 14 C -0.120 4.120 15 C -0.112 4.112 16 C -0.115 4.115 17 C 0.262 3.738 18 C -0.131 4.131 19 O -0.384 6.384 20 C 0.019 3.981 21 C 0.017 3.983 22 O -0.330 6.330 23 O -0.338 6.338 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.480 -1.290 -8.613 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.219 1.219 5 H -0.133 1.133 6 H -0.223 1.223 7 C -0.554 4.554 8 H 0.091 0.909 9 C 0.114 3.886 10 H 0.040 0.960 11 C -0.172 4.172 12 C -0.187 4.187 13 C 0.067 3.933 14 C -0.158 4.158 15 C -0.149 4.149 16 C -0.152 4.152 17 C 0.185 3.815 18 C -0.169 4.169 19 O -0.305 6.305 20 C -0.058 4.058 21 C -0.060 4.060 22 O -0.250 6.250 23 O -0.258 6.258 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.390 -0.963 -8.662 14.342 hybrid contribution 0.136 0.534 -0.014 0.551 sum 11.526 -0.429 -8.676 14.433 Atomic orbital electron populations 1.69942 1.06758 1.27156 1.49813 1.24971 0.94518 0.99710 0.92420 0.87039 0.83722 0.82256 0.77608 1.21915 1.13338 1.22262 1.20982 0.87929 0.94489 1.51958 0.90861 1.20947 0.95081 0.87553 0.85060 0.96022 1.23120 0.93984 1.00135 0.99933 1.23176 0.98748 0.97937 0.98819 1.21562 0.88517 0.91195 0.92064 1.21867 0.97230 0.96821 0.99871 1.21406 1.02428 0.97840 0.93263 1.21760 0.96516 0.98601 0.98364 1.23215 0.88131 0.89986 0.80191 1.22362 1.02189 0.96949 0.95378 1.89155 1.22754 1.86724 1.31890 1.24309 0.80850 0.99028 1.01602 1.24146 0.96023 0.97081 0.88753 1.89265 1.24868 1.75209 1.35654 1.89031 1.38563 1.53258 1.44982 0.92850 0.91909 0.91320 0.91709 0.91529 0.91730 0.92272 0.89787 0.92465 0.91574 0.91150 0.90917 0.90840 0.90726 0.88203 0.88256 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 3 Si 0.87 22.52 27.07 -169.99 -4.60 17.92 16 4 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 5 H -0.21 -5.29 4.89 56.52 0.28 -5.02 16 6 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 8 H 0.07 2.25 8.01 -52.49 -0.42 1.83 16 9 C 0.17 4.06 2.69 -26.85 -0.07 3.99 16 10 H 0.02 0.54 7.63 -51.93 -0.40 0.14 16 11 C -0.13 -2.66 6.53 -24.46 -0.16 -2.82 16 12 C -0.15 -2.48 6.06 -24.84 -0.15 -2.63 16 13 C 0.11 1.97 0.78 -90.16 -0.07 1.90 16 14 C -0.12 -1.92 4.77 -26.82 -0.13 -2.04 16 15 C -0.11 -1.79 5.67 -26.71 -0.15 -1.94 16 16 C -0.11 -1.76 5.32 -26.74 -0.14 -1.91 16 17 C 0.26 4.55 1.02 -26.77 -0.03 4.52 16 18 C -0.13 -2.26 4.19 -26.83 -0.11 -2.37 16 19 O -0.38 -6.26 10.98 -59.03 -0.65 -6.91 16 20 C 0.02 0.26 7.91 38.17 0.30 0.57 16 21 C 0.02 0.28 8.08 38.17 0.31 0.59 16 22 O -0.33 -6.65 8.45 -66.55 -0.56 -7.21 16 23 O -0.34 -7.75 5.09 -56.10 -0.29 -8.04 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 27 H 0.06 0.95 7.80 -51.92 -0.40 0.54 16 28 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.08 1.62 6.85 -51.93 -0.36 1.26 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -32.25 304.72 -8.29 -40.54 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.73 Total: 1.02 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.83 Total: -14.77 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.50 Total: -22.16 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.60 Total: 17.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.25 -8.29 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712736731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.244 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds