Wall clock time and date at job start Mon Mar 30 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.27869 * 60.63852 * 9 7 2 11 11 C 1.54960 * 110.30441 * 182.82706 * 9 7 2 12 12 C 1.55340 * 100.95647 * 155.27567 * 11 9 7 13 13 C 1.54250 * 102.19938 * 325.98390 * 12 11 9 14 14 C 1.52802 * 109.39195 * 140.95628 * 13 12 11 15 15 C 1.53019 * 109.56109 * 179.59885 * 14 13 12 16 16 C 1.53013 * 109.44698 * 300.23616 * 15 14 13 17 17 C 1.52960 * 109.44979 * 60.09497 * 16 15 14 18 18 C 1.52826 * 109.37776 * 261.63523 * 13 12 11 19 19 O 1.43695 * 109.42858 * 179.97438 * 17 16 15 20 20 C 1.44800 * 104.79794 * 215.95474 * 19 17 16 21 21 C 1.54920 * 101.73214 * 36.03593 * 20 19 17 22 22 O 1.43310 * 109.63620 * 60.60841 * 17 16 15 23 23 O 1.43042 * 107.76454 * 21.27933 * 13 12 11 24 24 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 25 25 H 1.08999 * 111.12840 * 273.19786 * 11 9 7 26 26 H 1.08998 * 111.12410 * 37.35378 * 11 9 7 27 27 H 1.09009 * 110.85528 * 207.80971 * 12 11 9 28 28 H 1.09001 * 111.03819 * 84.24251 * 12 11 9 29 29 H 1.09002 * 109.45663 * 299.62668 * 14 13 12 30 30 H 1.09008 * 109.45460 * 59.58812 * 14 13 12 31 31 H 1.08997 * 109.47112 * 60.22665 * 15 14 13 32 32 H 1.08995 * 109.47257 * 180.23577 * 15 14 13 33 33 H 1.09007 * 109.47293 * 180.08647 * 16 15 14 34 34 H 1.08997 * 109.47470 * 300.09084 * 16 15 14 35 35 H 1.09002 * 109.45880 * 300.81949 * 18 13 12 36 36 H 1.08999 * 109.46315 * 60.78090 * 18 13 12 37 37 H 1.08996 * 110.98139 * 277.92128 * 20 19 17 38 38 H 1.09002 * 111.00697 * 154.15761 * 20 19 17 39 39 H 1.09003 * 110.69777 * 206.06384 * 21 20 19 40 40 H 1.09004 * 110.84372 * 82.93215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8897 -0.6928 0.8899 11 6 4.0494 -2.6454 -0.0733 12 6 5.4508 -2.4101 -0.7009 13 6 5.1902 -1.2161 -1.6421 14 6 6.3832 -0.2626 -1.5942 15 6 6.1330 0.9186 -2.5344 16 6 5.9447 0.4021 -3.9623 17 6 4.7454 -0.5463 -4.0069 18 6 4.9843 -1.7291 -3.0668 19 8 4.5686 -1.0305 -5.3482 20 6 3.1342 -1.1307 -5.5192 21 6 2.6344 0.0927 -4.7107 22 8 3.5615 0.1554 -3.6071 23 8 4.0099 -0.5497 -1.1850 24 1 -0.4849 0.8401 -0.0004 25 1 4.1330 -3.0834 0.9213 26 1 3.4275 -3.2629 -0.7214 27 1 5.7755 -3.2849 -1.2644 28 1 6.1830 -2.1492 0.0634 29 1 6.5137 0.1049 -0.5763 30 1 7.2834 -0.7914 -1.9075 31 1 5.2353 1.4502 -2.2189 32 1 6.9866 1.5956 -2.5023 33 1 5.7680 1.2433 -4.6327 34 1 6.8417 -0.1312 -4.2771 35 1 5.8716 -2.2748 -3.3881 36 1 4.1206 -2.3935 -3.0924 37 1 2.7545 -2.0602 -5.0950 38 1 2.8589 -1.0427 -6.5702 39 1 1.6186 -0.0720 -4.3513 40 1 2.6867 1.0015 -5.3104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712736731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:09 Heat of formation + Delta-G solvation = -156.501867 kcal Electronic energy + Delta-G solvation = -23155.019130 eV Core-core repulsion = 19933.810358 eV Total energy + Delta-G solvation = -3221.208772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87787 -40.20812 -36.70656 -35.79562 -34.55352 -32.82083 -31.60110 -31.48921 -28.95802 -28.20056 -24.91435 -24.15380 -23.28220 -22.09761 -21.77819 -20.13883 -18.85516 -18.10959 -17.69385 -16.88813 -16.62073 -16.33861 -16.02436 -15.49340 -15.35131 -14.74094 -14.52130 -14.49534 -14.13255 -13.93456 -13.60959 -13.54240 -13.30335 -13.07437 -12.77425 -12.74137 -12.55699 -12.33253 -12.03491 -11.98889 -11.68828 -11.51630 -11.37537 -11.23232 -11.09808 -10.97708 -10.65917 -10.18247 -9.76521 -8.29422 -6.39125 1.37609 1.42195 1.76728 2.49478 2.52789 2.99361 3.12627 3.44792 3.67971 3.78036 3.88029 3.99047 4.08005 4.09828 4.20452 4.22951 4.31473 4.39675 4.54143 4.54969 4.59919 4.65092 4.71575 4.79620 4.83585 4.91637 4.97781 5.02521 5.04353 5.07756 5.17837 5.30401 5.31892 5.49845 5.51017 5.59950 5.67255 6.26382 6.33972 6.61094 6.94394 7.38655 8.84698 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.010236 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.082233 B = 2734.876232 C = 3200.129471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.034 3.966 3 Si 0.929 3.071 4 H -0.286 1.286 5 H -0.197 1.197 6 H -0.303 1.303 7 C -0.520 4.520 8 H 0.034 0.966 9 C 0.167 3.833 10 H 0.020 0.980 11 C -0.132 4.132 12 C -0.135 4.135 13 C 0.092 3.908 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.110 4.110 17 C 0.253 3.747 18 C -0.129 4.129 19 O -0.386 6.386 20 C 0.024 3.976 21 C 0.008 3.992 22 O -0.370 6.370 23 O -0.359 6.359 24 H 0.263 0.737 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.061 -1.227 -9.672 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.165 4.165 3 Si 0.754 3.246 4 H -0.213 1.213 5 H -0.119 1.119 6 H -0.231 1.231 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.111 3.889 10 H 0.038 0.962 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.052 3.948 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.148 4.148 17 C 0.176 3.824 18 C -0.167 4.167 19 O -0.307 6.307 20 C -0.052 4.052 21 C -0.069 4.069 22 O -0.291 6.291 23 O -0.279 6.279 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.991 -0.918 -9.726 17.893 hybrid contribution -1.027 0.420 0.271 1.142 sum 13.964 -0.499 -9.455 16.872 Atomic orbital electron populations 1.70071 1.08374 1.27900 1.52208 1.25769 0.95128 1.03137 0.92435 0.86090 0.82849 0.77954 0.77705 1.21258 1.11930 1.23059 1.21299 0.90930 0.92795 1.50743 0.94749 1.20746 0.92108 0.90434 0.85607 0.96203 1.23027 0.95925 0.97220 1.00856 1.23159 0.96781 0.98284 0.99005 1.21958 0.87786 0.92379 0.92710 1.21876 0.97128 0.96436 1.00024 1.21378 1.01732 0.98144 0.93525 1.21765 0.96428 0.98471 0.98119 1.23433 0.88109 0.90322 0.80510 1.22372 1.02373 0.96819 0.95124 1.89133 1.23578 1.86698 1.31324 1.24400 0.79883 0.97608 1.03325 1.24293 0.94902 0.99091 0.88606 1.89219 1.26418 1.75829 1.37593 1.88930 1.40960 1.53794 1.44178 0.92858 0.90503 0.93051 0.89004 0.89240 0.91855 0.88634 0.93729 0.89596 0.91364 0.88594 0.87971 0.93390 0.91419 0.84529 0.89992 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.45 0.30 -60.95 16 2 C 0.03 2.07 5.47 84.65 0.46 2.54 16 3 Si 0.93 47.95 27.07 68.60 1.86 49.81 16 4 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 5 H -0.20 -9.72 4.89 99.48 0.49 -9.23 16 6 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 7 C -0.52 -30.88 9.39 25.60 0.24 -30.64 16 8 H 0.03 2.24 8.01 -2.91 -0.02 2.21 16 9 C 0.17 8.03 2.69 30.52 0.08 8.11 16 10 H 0.02 0.98 7.63 -2.39 -0.02 0.96 16 11 C -0.13 -5.13 6.53 32.07 0.21 -4.92 16 12 C -0.13 -4.02 6.06 31.82 0.19 -3.82 16 13 C 0.09 3.11 0.78 -10.49 -0.01 3.10 16 14 C -0.12 -3.24 4.77 30.53 0.15 -3.10 16 15 C -0.11 -3.16 5.67 30.60 0.17 -2.98 16 16 C -0.11 -3.01 5.32 30.59 0.16 -2.85 16 17 C 0.25 8.26 1.02 30.57 0.03 8.29 16 18 C -0.13 -4.15 4.19 30.53 0.13 -4.02 16 19 O -0.39 -11.65 10.98 -126.22 -1.39 -13.04 16 20 C 0.02 0.64 7.91 72.64 0.57 1.22 16 21 C 0.01 0.25 8.08 72.64 0.59 0.84 16 22 O -0.37 -14.80 8.45 -119.03 -1.01 -15.81 16 23 O -0.36 -16.16 5.09 -129.02 -0.66 -16.81 16 24 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 25 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.05 2.13 8.05 -2.39 -0.02 2.11 16 27 H 0.09 2.27 7.80 -2.38 -0.02 2.25 16 28 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.04 1.64 6.85 -2.39 -0.02 1.62 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -72.88 304.72 2.87 -70.00 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.78 Total: 15.04 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 2.98 Total: -28.24 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -3.05 Total: -45.66 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.86 Total: 49.81 kcal Total: -72.88 2.87 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712736731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.498 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds