Wall clock time and date at job start Mon Mar 30 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99460 * 2 1 4 4 H 1.48499 * 109.47218 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47492 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46693 * 120.00606 * 3 2 1 7 7 C 1.37877 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99999 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.54341 * 302.86174 * 9 7 2 11 11 C 1.55010 * 110.60926 * 179.97438 * 9 7 2 12 12 C 1.54859 * 102.12493 * 204.57483 * 11 9 7 13 13 C 1.54005 * 104.06134 * 20.89073 * 12 11 9 14 14 C 1.52765 * 109.64480 * 242.46844 * 13 12 11 15 15 C 1.53038 * 109.53942 * 179.87807 * 14 13 12 16 16 C 1.53020 * 109.43032 * 59.74889 * 15 14 13 17 17 C 1.52962 * 109.47894 * 299.89153 * 16 15 14 18 18 C 1.52775 * 109.64866 * 121.36260 * 13 12 11 19 19 O 1.43698 * 109.41152 * 180.02562 * 17 16 15 20 20 C 1.44796 * 104.79557 * 95.45118 * 19 17 16 21 21 C 1.54919 * 101.71896 * 36.07959 * 20 19 17 22 22 O 1.43307 * 109.63547 * 299.32559 * 17 16 15 23 23 O 1.43515 * 107.53389 * 1.91476 * 13 12 11 24 24 H 0.96994 * 120.00516 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.90904 * 322.79281 * 11 9 7 26 26 H 1.08997 * 110.90571 * 86.36335 * 11 9 7 27 27 H 1.09001 * 110.50223 * 139.55544 * 12 11 9 28 28 H 1.09000 * 110.50299 * 262.23752 * 12 11 9 29 29 H 1.09002 * 109.45977 * 299.90108 * 14 13 12 30 30 H 1.09004 * 109.46119 * 59.85721 * 14 13 12 31 31 H 1.08999 * 109.47815 * 299.76090 * 15 14 13 32 32 H 1.09002 * 109.48405 * 179.73972 * 15 14 13 33 33 H 1.08995 * 109.46995 * 179.89027 * 16 15 14 34 34 H 1.08994 * 109.47083 * 59.88905 * 16 15 14 35 35 H 1.08993 * 109.45937 * 299.69200 * 18 13 12 36 36 H 1.09004 * 109.45812 * 59.64257 * 18 13 12 37 37 H 1.08997 * 110.97869 * 277.97637 * 20 19 17 38 38 H 1.09001 * 110.97989 * 154.18313 * 20 19 17 39 39 H 1.08997 * 110.69317 * 206.08690 * 21 20 19 40 40 H 1.09006 * 110.69547 * 82.88730 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.5806 -2.5537 0.8571 11 6 2.2349 -3.6971 -0.0018 12 6 1.3768 -4.8220 -0.6313 13 6 0.2682 -4.0676 -1.3886 14 6 -1.0933 -4.4221 -0.7932 15 6 -2.1928 -3.6690 -1.5454 16 6 -2.1592 -4.0623 -3.0238 17 6 -0.7971 -3.6991 -3.6175 18 6 0.3102 -4.4431 -2.8689 19 8 -0.7674 -4.0684 -5.0059 20 6 -1.1215 -2.8585 -5.7181 21 6 -0.4411 -1.7713 -4.8491 22 8 -0.5863 -2.2857 -3.5099 23 8 0.5178 -2.6628 -1.2340 24 1 -0.4850 0.8399 -0.0004 25 1 3.1081 -3.4827 -0.6181 26 1 2.5325 -3.9571 1.0140 27 1 1.9745 -5.4172 -1.3217 28 1 0.9468 -5.4542 0.1455 29 1 -1.2609 -5.4954 -0.8839 30 1 -1.1141 -4.1392 0.2593 31 1 -2.0280 -2.5956 -1.4510 32 1 -3.1641 -3.9261 -1.1229 33 1 -2.9433 -3.5277 -3.5599 34 1 -2.3218 -5.1359 -3.1179 35 1 1.2788 -4.1678 -3.2860 36 1 0.1616 -5.5177 -2.9753 37 1 -2.2025 -2.7207 -5.7397 38 1 -0.7101 -2.8652 -6.7274 39 1 -0.9569 -0.8167 -4.9530 40 1 0.6122 -1.6718 -5.1116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712736735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:12 Heat of formation + Delta-G solvation = -140.152874 kcal Electronic energy + Delta-G solvation = -22838.367266 eV Core-core repulsion = 19617.867440 eV Total energy + Delta-G solvation = -3220.499826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45775 -38.53727 -34.95851 -34.39838 -32.40672 -30.87452 -30.36158 -29.56962 -27.45874 -26.17357 -23.25466 -22.80743 -22.05549 -20.57981 -19.84859 -18.52997 -16.66704 -16.47226 -16.22457 -15.36562 -14.90659 -14.47556 -14.43369 -13.95753 -13.74078 -13.41508 -13.17740 -12.73164 -12.46543 -12.26678 -11.93496 -11.79553 -11.65274 -11.50929 -11.29279 -11.00186 -10.83907 -10.62015 -10.53417 -10.31654 -10.08002 -9.98299 -9.85663 -9.64576 -9.46715 -8.94152 -8.82849 -8.46180 -7.80928 -5.91073 -4.02098 3.36983 3.41059 3.43912 3.77984 4.43267 4.49613 4.89147 4.94486 5.08012 5.21272 5.28546 5.41464 5.46914 5.59910 5.63442 5.69805 5.72055 5.79123 5.91911 5.96309 6.02636 6.11543 6.15869 6.19641 6.21003 6.34848 6.42413 6.52855 6.63985 6.70308 6.79544 6.88483 6.93746 7.01879 7.19358 7.64359 7.69378 7.98483 8.37383 8.77146 9.11009 9.67022 11.16428 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.008306 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.808501 B = 3370.254394 C = 4074.672064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.207 3.793 10 H 0.025 0.975 11 C -0.148 4.148 12 C -0.147 4.147 13 C 0.102 3.898 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.261 3.739 18 C -0.105 4.105 19 O -0.384 6.384 20 C 0.016 3.984 21 C 0.017 3.983 22 O -0.322 6.322 23 O -0.316 6.316 24 H 0.259 0.741 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -7.885 -7.627 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.151 3.849 10 H 0.042 0.958 11 C -0.186 4.186 12 C -0.185 4.185 13 C 0.061 3.939 14 C -0.163 4.163 15 C -0.147 4.147 16 C -0.168 4.168 17 C 0.185 3.815 18 C -0.143 4.143 19 O -0.305 6.305 20 C -0.061 4.061 21 C -0.060 4.060 22 O -0.242 6.242 23 O -0.235 6.235 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.757 -7.702 -7.645 11.484 hybrid contribution 0.427 0.755 -0.113 0.875 sum -3.329 -6.947 -7.758 10.933 Atomic orbital electron populations 1.70012 1.05825 1.26344 1.47186 1.25011 0.94719 0.98921 0.93846 0.86761 0.79745 0.83434 0.78553 1.20236 1.21314 1.20293 1.20907 0.92460 0.89910 1.53244 0.92271 1.20637 0.87554 0.91886 0.84801 0.95785 1.23216 0.99697 0.96527 0.99130 1.22992 0.97693 0.98519 0.99294 1.21559 0.92867 0.87787 0.91716 1.21948 0.95744 0.98250 1.00322 1.21346 0.97293 1.03523 0.92488 1.22066 0.95861 1.00946 0.97901 1.23259 0.94737 0.82550 0.80990 1.21887 0.98237 0.98667 0.95528 1.89180 1.90352 1.32576 1.18346 1.24327 1.00014 0.84242 0.97527 1.24113 1.00872 0.97841 0.83159 1.89344 1.93023 1.18596 1.23212 1.89430 1.75645 1.15784 1.42643 0.93103 0.92004 0.92584 0.92254 0.92046 0.93075 0.91586 0.88934 0.92958 0.92140 0.91378 0.90855 0.90858 0.91314 0.88211 0.89026 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.12 55.43 0.73 -24.72 16 2 C 0.08 2.32 5.44 -17.82 -0.10 2.22 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.05 8.81 -34.44 -0.30 -15.35 16 8 H 0.06 1.65 7.77 -52.48 -0.41 1.24 16 9 C 0.21 5.39 3.04 -26.82 -0.08 5.31 16 10 H 0.02 0.68 8.13 -51.93 -0.42 0.26 16 11 C -0.15 -3.17 6.55 -24.69 -0.16 -3.33 16 12 C -0.15 -2.72 6.27 -25.23 -0.16 -2.88 16 13 C 0.10 2.07 0.71 -90.33 -0.06 2.00 16 14 C -0.12 -2.30 4.65 -26.83 -0.12 -2.42 16 15 C -0.11 -1.99 5.67 -26.70 -0.15 -2.14 16 16 C -0.13 -2.15 5.27 -26.74 -0.14 -2.29 16 17 C 0.26 4.77 1.02 -26.76 -0.03 4.74 16 18 C -0.11 -1.95 4.19 -26.86 -0.11 -2.06 16 19 O -0.38 -6.40 10.99 -59.04 -0.65 -7.05 16 20 C 0.02 0.21 7.91 38.17 0.30 0.51 16 21 C 0.02 0.28 8.07 38.17 0.31 0.59 16 22 O -0.32 -6.76 8.44 -66.58 -0.56 -7.32 16 23 O -0.32 -8.05 7.99 -56.19 -0.45 -8.50 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 28 H 0.06 1.02 7.68 -51.93 -0.40 0.63 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 31 H 0.09 2.08 7.32 -51.93 -0.38 1.70 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -31.57 311.61 -8.70 -40.27 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.63 Total: 1.04 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.81 Total: -15.11 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.73 Total: -24.72 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.66 Total: -22.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.57 -8.70 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712736735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.883 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds