Wall clock time and date at job start Mon Mar 30 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99460 * 2 1 4 4 H 1.48499 * 109.47218 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47492 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46693 * 120.00606 * 3 2 1 7 7 C 1.37877 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99999 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.54341 * 302.86174 * 9 7 2 11 11 C 1.55010 * 110.60926 * 179.97438 * 9 7 2 12 12 C 1.54859 * 102.12493 * 204.57483 * 11 9 7 13 13 C 1.54005 * 104.06134 * 20.89073 * 12 11 9 14 14 C 1.52765 * 109.64480 * 242.46844 * 13 12 11 15 15 C 1.53038 * 109.53942 * 179.87807 * 14 13 12 16 16 C 1.53020 * 109.43032 * 59.74889 * 15 14 13 17 17 C 1.52962 * 109.47894 * 299.89153 * 16 15 14 18 18 C 1.52775 * 109.64866 * 121.36260 * 13 12 11 19 19 O 1.43698 * 109.41152 * 180.02562 * 17 16 15 20 20 C 1.44796 * 104.79557 * 95.45118 * 19 17 16 21 21 C 1.54919 * 101.71896 * 36.07959 * 20 19 17 22 22 O 1.43307 * 109.63547 * 299.32559 * 17 16 15 23 23 O 1.43515 * 107.53389 * 1.91476 * 13 12 11 24 24 H 0.96994 * 120.00516 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.90904 * 322.79281 * 11 9 7 26 26 H 1.08997 * 110.90571 * 86.36335 * 11 9 7 27 27 H 1.09001 * 110.50223 * 139.55544 * 12 11 9 28 28 H 1.09000 * 110.50299 * 262.23752 * 12 11 9 29 29 H 1.09002 * 109.45977 * 299.90108 * 14 13 12 30 30 H 1.09004 * 109.46119 * 59.85721 * 14 13 12 31 31 H 1.08999 * 109.47815 * 299.76090 * 15 14 13 32 32 H 1.09002 * 109.48405 * 179.73972 * 15 14 13 33 33 H 1.08995 * 109.46995 * 179.89027 * 16 15 14 34 34 H 1.08994 * 109.47083 * 59.88905 * 16 15 14 35 35 H 1.08993 * 109.45937 * 299.69200 * 18 13 12 36 36 H 1.09004 * 109.45812 * 59.64257 * 18 13 12 37 37 H 1.08997 * 110.97869 * 277.97637 * 20 19 17 38 38 H 1.09001 * 110.97989 * 154.18313 * 20 19 17 39 39 H 1.08997 * 110.69317 * 206.08690 * 21 20 19 40 40 H 1.09006 * 110.69547 * 82.88730 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.5806 -2.5537 0.8571 11 6 2.2349 -3.6971 -0.0018 12 6 1.3768 -4.8220 -0.6313 13 6 0.2682 -4.0676 -1.3886 14 6 -1.0933 -4.4221 -0.7932 15 6 -2.1928 -3.6690 -1.5454 16 6 -2.1592 -4.0623 -3.0238 17 6 -0.7971 -3.6991 -3.6175 18 6 0.3102 -4.4431 -2.8689 19 8 -0.7674 -4.0684 -5.0059 20 6 -1.1215 -2.8585 -5.7181 21 6 -0.4411 -1.7713 -4.8491 22 8 -0.5863 -2.2857 -3.5099 23 8 0.5178 -2.6628 -1.2340 24 1 -0.4850 0.8399 -0.0004 25 1 3.1081 -3.4827 -0.6181 26 1 2.5325 -3.9571 1.0140 27 1 1.9745 -5.4172 -1.3217 28 1 0.9468 -5.4542 0.1455 29 1 -1.2609 -5.4954 -0.8839 30 1 -1.1141 -4.1392 0.2593 31 1 -2.0280 -2.5956 -1.4510 32 1 -3.1641 -3.9261 -1.1229 33 1 -2.9433 -3.5277 -3.5599 34 1 -2.3218 -5.1359 -3.1179 35 1 1.2788 -4.1678 -3.2860 36 1 0.1616 -5.5177 -2.9753 37 1 -2.2025 -2.7207 -5.7397 38 1 -0.7101 -2.8652 -6.7274 39 1 -0.9569 -0.8167 -4.9530 40 1 0.6122 -1.6718 -5.1116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712736735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:12 Heat of formation + Delta-G solvation = -159.859849 kcal Electronic energy + Delta-G solvation = -22839.221825 eV Core-core repulsion = 19617.867440 eV Total energy + Delta-G solvation = -3221.354385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82685 -40.12884 -36.51353 -35.77087 -34.48442 -32.58671 -31.75431 -31.17935 -28.79600 -28.05542 -25.00204 -24.04793 -23.52207 -22.24450 -21.46870 -20.04679 -18.58127 -17.95129 -17.55618 -16.84009 -16.62338 -16.32907 -15.91697 -15.39164 -15.34036 -14.94017 -14.57769 -14.17297 -14.10820 -13.76123 -13.51864 -13.39428 -13.17094 -13.06392 -12.76846 -12.72216 -12.41370 -12.38442 -12.04460 -11.95140 -11.93928 -11.58745 -11.27307 -11.17572 -10.97410 -10.85465 -10.63529 -10.21538 -9.68789 -8.08491 -6.27268 1.39148 1.42202 1.49198 2.43032 2.54809 3.10454 3.16055 3.56847 3.69942 3.79041 3.97311 4.05656 4.09636 4.14968 4.21614 4.25499 4.34766 4.46525 4.54625 4.60296 4.62158 4.70630 4.75653 4.80937 4.88691 4.92520 4.97854 5.03733 5.07845 5.12311 5.20384 5.31861 5.36196 5.51642 5.57224 5.70569 5.81639 6.26956 6.39211 6.71011 7.14662 7.46434 8.98683 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.008306 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.808501 B = 3370.254394 C = 4074.672064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.029 3.971 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.201 3.799 10 H -0.011 1.011 11 C -0.142 4.142 12 C -0.138 4.138 13 C 0.088 3.912 14 C -0.122 4.122 15 C -0.104 4.104 16 C -0.123 4.123 17 C 0.256 3.744 18 C -0.104 4.104 19 O -0.390 6.390 20 C 0.023 3.977 21 C 0.005 3.995 22 O -0.368 6.368 23 O -0.344 6.344 24 H 0.258 0.742 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -9.490 -8.884 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.145 3.855 10 H 0.006 0.994 11 C -0.180 4.180 12 C -0.175 4.175 13 C 0.047 3.953 14 C -0.160 4.160 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.179 3.821 18 C -0.142 4.142 19 O -0.311 6.311 20 C -0.053 4.053 21 C -0.072 4.072 22 O -0.289 6.289 23 O -0.263 6.263 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.851 -9.318 -8.909 13.455 hybrid contribution 0.446 1.250 0.249 1.350 sum -3.405 -8.068 -8.660 12.316 Atomic orbital electron populations 1.70165 1.07341 1.27001 1.48277 1.25831 0.95568 1.02520 0.93440 0.85710 0.78515 0.79026 0.78888 1.19923 1.20802 1.19027 1.21330 0.92714 0.91674 1.53322 0.92452 1.20443 0.87885 0.92986 0.84203 0.99382 1.23090 0.98810 0.95894 1.00221 1.22984 0.96834 0.97683 1.00023 1.21910 0.94354 0.85536 0.93507 1.21935 0.94824 1.00454 0.98788 1.21236 0.98410 1.00177 0.94344 1.22030 0.95237 1.02607 0.96197 1.23342 0.95313 0.81490 0.81920 1.21891 0.97702 1.00492 0.94067 1.89146 1.90643 1.33629 1.17651 1.24509 1.00985 0.81810 0.98004 1.24331 1.01158 0.99369 0.82331 1.89319 1.93263 1.20428 1.25882 1.89361 1.75868 1.19491 1.41623 0.93287 0.92653 0.91250 0.89773 0.89811 0.89182 0.93769 0.94245 0.90706 0.91377 0.88625 0.92593 0.87721 0.89587 0.84899 0.88107 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.10 13.12 21.45 0.28 -54.82 16 2 C 0.03 1.71 5.44 84.65 0.46 2.17 16 3 Si 0.95 45.60 29.54 68.60 2.03 47.62 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -32.61 8.81 25.60 0.23 -32.39 16 8 H 0.06 3.29 7.77 -2.91 -0.02 3.26 16 9 C 0.20 10.86 3.04 30.54 0.09 10.95 16 10 H -0.01 -0.68 8.13 -2.39 -0.02 -0.70 16 11 C -0.14 -6.10 6.55 31.92 0.21 -5.89 16 12 C -0.14 -4.84 6.27 31.57 0.20 -4.64 16 13 C 0.09 3.49 0.71 -10.61 -0.01 3.48 16 14 C -0.12 -4.37 4.65 30.53 0.14 -4.22 16 15 C -0.10 -3.74 5.67 30.61 0.17 -3.57 16 16 C -0.12 -3.82 5.27 30.59 0.16 -3.66 16 17 C 0.26 9.00 1.02 30.57 0.03 9.03 16 18 C -0.10 -3.67 4.19 30.51 0.13 -3.55 16 19 O -0.39 -12.03 10.99 -126.22 -1.39 -13.42 16 20 C 0.02 0.56 7.91 72.64 0.57 1.13 16 21 C 0.00 0.15 8.07 72.64 0.59 0.74 16 22 O -0.37 -15.71 8.44 -119.00 -1.00 -16.71 16 23 O -0.34 -18.09 7.99 -128.94 -1.03 -19.12 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.08 2.54 7.69 -2.39 -0.02 2.52 16 28 H 0.08 2.56 7.68 -2.39 -0.02 2.54 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.04 1.74 8.12 -2.39 -0.02 1.72 16 31 H 0.04 1.84 7.32 -2.39 -0.02 1.82 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -71.71 311.61 2.86 -68.85 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.00 Total: 18.00 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 2.98 Total: -30.40 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -3.42 Total: -49.25 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.71 2.86 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712736735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.010 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds