Wall clock time and date at job start Mon Mar 30 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09000 * 110.27423 * 59.29326 * 9 7 2 11 11 C 1.54957 * 110.30971 * 181.38799 * 9 7 2 12 12 C 1.55454 * 100.90440 * 155.20370 * 11 9 7 13 13 C 1.54237 * 102.25815 * 326.11433 * 12 11 9 14 14 C 1.52797 * 109.39670 * 261.52067 * 13 12 11 15 15 C 1.53025 * 109.56673 * 180.38703 * 14 13 12 16 16 C 1.53027 * 109.43671 * 59.74941 * 15 14 13 17 17 C 1.52957 * 109.44410 * 299.89563 * 16 15 14 18 18 C 1.52828 * 109.39093 * 140.82332 * 13 12 11 19 19 O 1.43691 * 109.41331 * 299.82570 * 17 16 15 20 20 C 1.44796 * 104.80833 * 215.98027 * 19 17 16 21 21 C 1.54918 * 101.73778 * 36.00379 * 20 19 17 22 22 O 1.43314 * 109.64800 * 180.49168 * 17 16 15 23 23 O 1.43046 * 107.76976 * 21.18832 * 13 12 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.08997 * 111.12515 * 273.19981 * 11 9 7 26 26 H 1.09007 * 111.12600 * 37.35574 * 11 9 7 27 27 H 1.08999 * 110.88793 * 207.89042 * 12 11 9 28 28 H 1.08996 * 110.93934 * 84.36398 * 12 11 9 29 29 H 1.09006 * 109.45897 * 300.41444 * 14 13 12 30 30 H 1.08997 * 109.45822 * 60.35663 * 14 13 12 31 31 H 1.08994 * 109.48231 * 179.74203 * 15 14 13 32 32 H 1.09003 * 109.47384 * 299.76154 * 15 14 13 33 33 H 1.09005 * 109.47542 * 59.89046 * 16 15 14 34 34 H 1.09006 * 109.47167 * 179.89791 * 16 15 14 35 35 H 1.09006 * 109.46028 * 299.24223 * 18 13 12 36 36 H 1.09005 * 109.46137 * 59.20377 * 18 13 12 37 37 H 1.09004 * 110.97895 * 277.89754 * 20 19 17 38 38 H 1.09000 * 111.00985 * 154.13376 * 20 19 17 39 39 H 1.08996 * 110.69668 * 206.08227 * 21 20 19 40 40 H 1.09003 * 110.69446 * 82.87955 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6064 -2.5631 -0.8825 11 6 2.2405 -3.6914 0.0224 12 6 1.3512 -4.7966 0.6583 13 6 0.4707 -3.9879 1.6328 14 6 1.0510 -4.0872 3.0428 15 6 0.1748 -3.2940 4.0147 16 6 -1.2452 -3.8642 4.0015 17 6 -1.8245 -3.7555 2.5901 18 6 -0.9530 -4.5430 1.6101 19 8 -1.8616 -2.3748 2.1940 20 6 -3.0719 -2.2473 1.4094 21 6 -4.0315 -3.2110 2.1513 22 8 -3.1589 -4.2780 2.5753 23 8 0.4730 -2.6259 1.1957 24 1 -0.4850 -0.8400 0.0004 25 1 2.5521 -3.9672 -0.9850 26 1 3.1028 -3.4715 0.6519 27 1 1.9598 -5.5230 1.1968 28 1 0.7410 -5.2891 -0.0987 29 1 1.0803 -5.1324 3.3507 30 1 2.0616 -3.6788 3.0490 31 1 0.5874 -3.3695 5.0207 32 1 0.1492 -2.2477 3.7099 33 1 -1.2193 -4.9110 4.3042 34 1 -1.8695 -3.3007 4.6951 35 1 -1.3629 -4.4506 0.6043 36 1 -0.9379 -5.5935 1.9008 37 1 -2.9076 -2.5743 0.3826 38 1 -3.4486 -1.2248 1.4355 39 1 -4.7990 -3.5869 1.4748 40 1 -4.4832 -2.7178 3.0120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712736743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:19 Heat of formation + Delta-G solvation = -166.572588 kcal Electronic energy + Delta-G solvation = -23011.118434 eV Core-core repulsion = 19789.472963 eV Total energy + Delta-G solvation = -3221.645471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92048 -40.22323 -36.79282 -35.80965 -34.58286 -32.79094 -31.59913 -31.30681 -28.88013 -27.63175 -24.96061 -24.09642 -23.43100 -22.65130 -21.70193 -20.15649 -19.01793 -17.97320 -17.58141 -16.96398 -16.67187 -16.17978 -15.64699 -15.48551 -15.45812 -15.10438 -14.82716 -14.39667 -13.91057 -13.78768 -13.68914 -13.47847 -13.34311 -13.06953 -12.62302 -12.55974 -12.46714 -12.34813 -12.13208 -12.08648 -11.91132 -11.68617 -11.35590 -11.31907 -11.02485 -10.64708 -10.55426 -10.27547 -9.76103 -8.53385 -6.30754 1.51845 1.61016 1.79381 2.47719 2.60140 3.07735 3.14213 3.47959 3.63044 3.71296 3.80386 3.95150 4.04369 4.06243 4.09692 4.17465 4.29269 4.38611 4.47827 4.48333 4.57956 4.59197 4.67202 4.73751 4.76870 4.85788 4.87462 4.95004 4.98281 5.01018 5.09147 5.23800 5.25947 5.41312 5.49862 5.58854 6.07480 6.19960 6.28704 6.69168 6.95241 7.61876 8.88715 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.008372 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.719458 B = 3343.792053 C = 3985.384070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.017 4.017 3 Si 1.112 2.888 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.629 4.629 8 H 0.047 0.953 9 C 0.185 3.815 10 H -0.023 1.023 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.095 3.905 14 C -0.112 4.112 15 C -0.105 4.105 16 C -0.109 4.109 17 C 0.254 3.746 18 C -0.131 4.131 19 O -0.360 6.360 20 C 0.012 3.988 21 C 0.028 3.972 22 O -0.395 6.395 23 O -0.360 6.360 24 H 0.270 0.730 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -10.394 6.164 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.220 4.220 3 Si 0.934 3.066 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.666 4.666 8 H 0.066 0.934 9 C 0.129 3.871 10 H -0.006 1.006 11 C -0.170 4.170 12 C -0.175 4.175 13 C 0.054 3.946 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.147 4.147 17 C 0.177 3.823 18 C -0.169 4.169 19 O -0.280 6.280 20 C -0.065 4.065 21 C -0.048 4.048 22 O -0.317 6.317 23 O -0.280 6.280 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.462 -8.661 6.369 11.640 hybrid contribution 0.076 -1.443 -0.695 1.604 sum -4.386 -10.105 5.674 12.391 Atomic orbital electron populations 1.70718 1.07685 1.31257 1.45069 1.27160 0.96784 1.06059 0.91981 0.83028 0.74218 0.71746 0.77613 1.20979 1.20196 1.19422 1.22322 0.93776 0.92868 1.57664 0.93427 1.20475 0.87961 0.94646 0.83999 1.00596 1.23092 0.98455 0.95008 1.00494 1.23169 0.97963 0.97754 0.98594 1.21909 0.92972 0.84697 0.95003 1.21788 0.98614 1.01058 0.93499 1.21288 0.94182 0.99303 0.99514 1.21783 0.96470 1.02979 0.93435 1.23353 0.83313 0.80413 0.95210 1.22400 0.95411 1.00414 0.98671 1.89548 1.42930 1.25927 1.69641 1.24328 0.84425 1.02187 0.95516 1.24314 0.93452 0.87492 0.99544 1.88772 1.17178 1.36437 1.89291 1.88843 1.72507 1.23668 1.42979 0.91970 0.91204 0.91933 0.88152 0.90961 0.88678 0.92857 0.89781 0.94510 0.88279 0.91243 0.93510 0.88035 0.92900 0.87602 0.86103 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.79 13.57 21.45 0.29 -57.50 16 2 C -0.02 -1.02 5.42 84.65 0.46 -0.56 16 3 Si 1.11 52.37 29.90 68.60 2.05 54.42 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.63 -37.21 8.80 25.60 0.23 -36.99 16 8 H 0.05 2.76 7.76 -2.91 -0.02 2.74 16 9 C 0.18 9.90 2.80 30.52 0.09 9.98 16 10 H -0.02 -1.38 7.99 -2.39 -0.02 -1.40 16 11 C -0.13 -5.58 6.54 32.11 0.21 -5.37 16 12 C -0.14 -4.69 6.07 31.86 0.19 -4.50 16 13 C 0.09 3.63 0.78 -10.50 -0.01 3.62 16 14 C -0.11 -3.71 4.76 30.53 0.15 -3.57 16 15 C -0.11 -3.53 5.66 30.61 0.17 -3.36 16 16 C -0.11 -3.33 5.33 30.59 0.16 -3.17 16 17 C 0.25 8.93 1.03 30.57 0.03 8.96 16 18 C -0.13 -4.57 4.22 30.53 0.13 -4.44 16 19 O -0.36 -15.45 8.49 -118.97 -1.01 -16.46 16 20 C 0.01 0.43 7.91 72.64 0.57 1.00 16 21 C 0.03 0.75 8.07 72.64 0.59 1.34 16 22 O -0.40 -12.54 10.87 -126.22 -1.37 -13.91 16 23 O -0.36 -18.38 7.00 -128.83 -0.90 -19.29 16 24 H 0.27 17.47 6.61 -92.71 -0.61 16.86 16 25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.64 8.04 -2.38 -0.02 2.62 16 27 H 0.10 2.73 7.80 -2.39 -0.02 2.72 16 28 H 0.07 2.32 7.83 -2.39 -0.02 2.30 16 29 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.04 1.59 7.31 -2.39 -0.02 1.57 16 33 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 37 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.38 309.61 3.19 -69.19 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.16 Total: 20.59 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 2.97 Total: -37.04 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.29 Total: -57.50 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -3.28 Total: -49.66 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -72.38 3.19 -69.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712736743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.382 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds