Wall clock time and date at job start Mon Mar 30 2020 06:56:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 119.99710 * 2 1
4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1
5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1
6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1
7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3
8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1
9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1
10 10 H 1.09000 * 110.27423 * 59.29326 * 9 7 2
11 11 C 1.54957 * 110.30971 * 181.38799 * 9 7 2
12 12 C 1.55454 * 100.90440 * 155.20370 * 11 9 7
13 13 C 1.54237 * 102.25815 * 326.11433 * 12 11 9
14 14 C 1.52797 * 109.39670 * 261.52067 * 13 12 11
15 15 C 1.53025 * 109.56673 * 180.38703 * 14 13 12
16 16 C 1.53027 * 109.43671 * 59.74941 * 15 14 13
17 17 C 1.52957 * 109.44410 * 299.89563 * 16 15 14
18 18 C 1.52828 * 109.39093 * 140.82332 * 13 12 11
19 19 O 1.43691 * 109.41331 * 299.82570 * 17 16 15
20 20 C 1.44796 * 104.80833 * 215.98027 * 19 17 16
21 21 C 1.54918 * 101.73778 * 36.00379 * 20 19 17
22 22 O 1.43314 * 109.64800 * 180.49168 * 17 16 15
23 23 O 1.43046 * 107.76976 * 21.18832 * 13 12 11
24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3
25 25 H 1.08997 * 111.12515 * 273.19981 * 11 9 7
26 26 H 1.09007 * 111.12600 * 37.35574 * 11 9 7
27 27 H 1.08999 * 110.88793 * 207.89042 * 12 11 9
28 28 H 1.08996 * 110.93934 * 84.36398 * 12 11 9
29 29 H 1.09006 * 109.45897 * 300.41444 * 14 13 12
30 30 H 1.08997 * 109.45822 * 60.35663 * 14 13 12
31 31 H 1.08994 * 109.48231 * 179.74203 * 15 14 13
32 32 H 1.09003 * 109.47384 * 299.76154 * 15 14 13
33 33 H 1.09005 * 109.47542 * 59.89046 * 16 15 14
34 34 H 1.09006 * 109.47167 * 179.89791 * 16 15 14
35 35 H 1.09006 * 109.46028 * 299.24223 * 18 13 12
36 36 H 1.09005 * 109.46137 * 59.20377 * 18 13 12
37 37 H 1.09004 * 110.97895 * 277.89754 * 20 19 17
38 38 H 1.09000 * 111.00985 * 154.13376 * 20 19 17
39 39 H 1.08996 * 110.69668 * 206.08227 * 21 20 19
40 40 H 1.09003 * 110.69446 * 82.87955 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1029 1.6964 1.2125
6 1 3.1028 1.6964 -1.2125
7 6 2.0045 -1.1940 -0.0057
8 1 3.0845 -1.1940 -0.0103
9 6 1.2510 -2.4992 -0.0059
10 1 0.6064 -2.5631 -0.8825
11 6 2.2405 -3.6914 0.0224
12 6 1.3512 -4.7966 0.6583
13 6 0.4707 -3.9879 1.6328
14 6 1.0510 -4.0872 3.0428
15 6 0.1748 -3.2940 4.0147
16 6 -1.2452 -3.8642 4.0015
17 6 -1.8245 -3.7555 2.5901
18 6 -0.9530 -4.5430 1.6101
19 8 -1.8616 -2.3748 2.1940
20 6 -3.0719 -2.2473 1.4094
21 6 -4.0315 -3.2110 2.1513
22 8 -3.1589 -4.2780 2.5753
23 8 0.4730 -2.6259 1.1957
24 1 -0.4850 -0.8400 0.0004
25 1 2.5521 -3.9672 -0.9850
26 1 3.1028 -3.4715 0.6519
27 1 1.9598 -5.5230 1.1968
28 1 0.7410 -5.2891 -0.0987
29 1 1.0803 -5.1324 3.3507
30 1 2.0616 -3.6788 3.0490
31 1 0.5874 -3.3695 5.0207
32 1 0.1492 -2.2477 3.7099
33 1 -1.2193 -4.9110 4.3042
34 1 -1.8695 -3.3007 4.6951
35 1 -1.3629 -4.4506 0.6043
36 1 -0.9379 -5.5935 1.9008
37 1 -2.9076 -2.5743 0.3826
38 1 -3.4486 -1.2248 1.4355
39 1 -4.7990 -3.5869 1.4748
40 1 -4.4832 -2.7178 3.0120
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000712736743.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:56:19
Heat of formation + Delta-G solvation = -166.572588 kcal
Electronic energy + Delta-G solvation = -23011.118434 eV
Core-core repulsion = 19789.472963 eV
Total energy + Delta-G solvation = -3221.645471 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.92048 -40.22323 -36.79282 -35.80965 -34.58286 -32.79094 -31.59913 -31.30681
-28.88013 -27.63175 -24.96061 -24.09642 -23.43100 -22.65130 -21.70193 -20.15649
-19.01793 -17.97320 -17.58141 -16.96398 -16.67187 -16.17978 -15.64699 -15.48551
-15.45812 -15.10438 -14.82716 -14.39667 -13.91057 -13.78768 -13.68914 -13.47847
-13.34311 -13.06953 -12.62302 -12.55974 -12.46714 -12.34813 -12.13208 -12.08648
-11.91132 -11.68617 -11.35590 -11.31907 -11.02485 -10.64708 -10.55426 -10.27547
-9.76103 -8.53385 -6.30754 1.51845 1.61016 1.79381 2.47719 2.60140
3.07735 3.14213 3.47959 3.63044 3.71296 3.80386 3.95150 4.04369
4.06243 4.09692 4.17465 4.29269 4.38611 4.47827 4.48333 4.57956
4.59197 4.67202 4.73751 4.76870 4.85788 4.87462 4.95004 4.98281
5.01018 5.09147 5.23800 5.25947 5.41312 5.49862 5.58854 6.07480
6.19960 6.28704 6.69168 6.95241 7.61876 8.88715
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.019731 B = 0.008372 C = 0.007024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.719458 B = 3343.792053 C = 3985.384070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C -0.017 4.017
3 Si 1.112 2.888
4 H -0.284 1.284
5 H -0.276 1.276
6 H -0.269 1.269
7 C -0.629 4.629
8 H 0.047 0.953
9 C 0.185 3.815
10 H -0.023 1.023
11 C -0.133 4.133
12 C -0.137 4.137
13 C 0.095 3.905
14 C -0.112 4.112
15 C -0.105 4.105
16 C -0.109 4.109
17 C 0.254 3.746
18 C -0.131 4.131
19 O -0.360 6.360
20 C 0.012 3.988
21 C 0.028 3.972
22 O -0.395 6.395
23 O -0.360 6.360
24 H 0.270 0.730
25 H 0.069 0.931
26 H 0.062 0.938
27 H 0.100 0.900
28 H 0.072 0.928
29 H 0.095 0.905
30 H 0.053 0.947
31 H 0.084 0.916
32 H 0.036 0.964
33 H 0.099 0.901
34 H 0.069 0.931
35 H 0.046 0.954
36 H 0.101 0.899
37 H 0.053 0.947
38 H 0.106 0.894
39 H 0.121 0.879
40 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.261 -10.394 6.164 12.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.220 4.220
3 Si 0.934 3.066
4 H -0.210 1.210
5 H -0.202 1.202
6 H -0.194 1.194
7 C -0.666 4.666
8 H 0.066 0.934
9 C 0.129 3.871
10 H -0.006 1.006
11 C -0.170 4.170
12 C -0.175 4.175
13 C 0.054 3.946
14 C -0.150 4.150
15 C -0.143 4.143
16 C -0.147 4.147
17 C 0.177 3.823
18 C -0.169 4.169
19 O -0.280 6.280
20 C -0.065 4.065
21 C -0.048 4.048
22 O -0.317 6.317
23 O -0.280 6.280
24 H 0.080 0.920
25 H 0.088 0.912
26 H 0.081 0.919
27 H 0.118 0.882
28 H 0.090 0.910
29 H 0.113 0.887
30 H 0.071 0.929
31 H 0.102 0.898
32 H 0.055 0.945
33 H 0.117 0.883
34 H 0.088 0.912
35 H 0.065 0.935
36 H 0.120 0.880
37 H 0.071 0.929
38 H 0.124 0.876
39 H 0.139 0.861
40 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -4.462 -8.661 6.369 11.640
hybrid contribution 0.076 -1.443 -0.695 1.604
sum -4.386 -10.105 5.674 12.391
Atomic orbital electron populations
1.70718 1.07685 1.31257 1.45069 1.27160 0.96784 1.06059 0.91981
0.83028 0.74218 0.71746 0.77613 1.20979 1.20196 1.19422 1.22322
0.93776 0.92868 1.57664 0.93427 1.20475 0.87961 0.94646 0.83999
1.00596 1.23092 0.98455 0.95008 1.00494 1.23169 0.97963 0.97754
0.98594 1.21909 0.92972 0.84697 0.95003 1.21788 0.98614 1.01058
0.93499 1.21288 0.94182 0.99303 0.99514 1.21783 0.96470 1.02979
0.93435 1.23353 0.83313 0.80413 0.95210 1.22400 0.95411 1.00414
0.98671 1.89548 1.42930 1.25927 1.69641 1.24328 0.84425 1.02187
0.95516 1.24314 0.93452 0.87492 0.99544 1.88772 1.17178 1.36437
1.89291 1.88843 1.72507 1.23668 1.42979 0.91970 0.91204 0.91933
0.88152 0.90961 0.88678 0.92857 0.89781 0.94510 0.88279 0.91243
0.93510 0.88035 0.92900 0.87602 0.86103 0.89444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -57.79 13.57 21.45 0.29 -57.50 16
2 C -0.02 -1.02 5.42 84.65 0.46 -0.56 16
3 Si 1.11 52.37 29.90 68.60 2.05 54.42 16
4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
7 C -0.63 -37.21 8.80 25.60 0.23 -36.99 16
8 H 0.05 2.76 7.76 -2.91 -0.02 2.74 16
9 C 0.18 9.90 2.80 30.52 0.09 9.98 16
10 H -0.02 -1.38 7.99 -2.39 -0.02 -1.40 16
11 C -0.13 -5.58 6.54 32.11 0.21 -5.37 16
12 C -0.14 -4.69 6.07 31.86 0.19 -4.50 16
13 C 0.09 3.63 0.78 -10.50 -0.01 3.62 16
14 C -0.11 -3.71 4.76 30.53 0.15 -3.57 16
15 C -0.11 -3.53 5.66 30.61 0.17 -3.36 16
16 C -0.11 -3.33 5.33 30.59 0.16 -3.17 16
17 C 0.25 8.93 1.03 30.57 0.03 8.96 16
18 C -0.13 -4.57 4.22 30.53 0.13 -4.44 16
19 O -0.36 -15.45 8.49 -118.97 -1.01 -16.46 16
20 C 0.01 0.43 7.91 72.64 0.57 1.00 16
21 C 0.03 0.75 8.07 72.64 0.59 1.34 16
22 O -0.40 -12.54 10.87 -126.22 -1.37 -13.91 16
23 O -0.36 -18.38 7.00 -128.83 -0.90 -19.29 16
24 H 0.27 17.47 6.61 -92.71 -0.61 16.86 16
25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16
26 H 0.06 2.64 8.04 -2.38 -0.02 2.62 16
27 H 0.10 2.73 7.80 -2.39 -0.02 2.72 16
28 H 0.07 2.32 7.83 -2.39 -0.02 2.30 16
29 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16
30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
32 H 0.04 1.59 7.31 -2.39 -0.02 1.57 16
33 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16
34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16
35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16
36 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16
37 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16
38 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16
39 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16
40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
Total: -1.00 -72.38 309.61 3.19 -69.19
By element:
Atomic # 1 Polarization: 19.43 SS G_CDS: 1.16 Total: 20.59 kcal
Atomic # 6 Polarization: -40.01 SS G_CDS: 2.97 Total: -37.04 kcal
Atomic # 7 Polarization: -57.79 SS G_CDS: 0.29 Total: -57.50 kcal
Atomic # 8 Polarization: -46.37 SS G_CDS: -3.28 Total: -49.66 kcal
Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal
Total: -72.38 3.19 -69.19 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000712736743.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.382 kcal
(2) G-P(sol) polarization free energy of solvation -72.376 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.758 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds