Wall clock time and date at job start Mon Mar 30 2020 06:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 119.99907 * 2 1 4 4 C 1.32873 * 119.99936 * 185.31590 * 3 2 1 5 5 C 1.50694 * 119.99885 * 6.24813 * 4 3 2 6 6 C 1.53007 * 109.47383 * 126.12462 * 5 4 3 7 7 N 1.46498 * 109.47344 * 179.97438 * 6 5 4 8 8 C 1.37849 * 126.53579 * 270.02621 * 7 6 5 9 9 C 1.40186 * 125.30597 * 359.97438 * 8 7 6 10 10 H 1.07996 * 120.00009 * 0.02562 * 9 8 7 11 11 C 1.40346 * 119.99498 * 180.02562 * 9 8 7 12 12 N 1.30580 * 120.00565 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99638 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46921 * 59.99879 * 13 11 9 15 15 H 1.48494 * 109.47287 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47067 * 299.99989 * 13 11 9 17 17 N 1.32467 * 109.38579 * 179.97438 * 8 7 6 18 18 C 1.33968 * 109.78671 * 359.97348 * 17 8 7 19 19 C 1.40534 * 133.20299 * 179.97438 * 18 17 8 20 20 C 1.36359 * 119.85227 * 180.02562 * 19 18 17 21 21 C 1.39044 * 120.75908 * 359.97438 * 20 19 18 22 22 C 1.37963 * 120.57239 * 0.03717 * 21 20 19 23 23 C 1.37968 * 126.53476 * 89.99853 * 7 6 5 24 24 H 1.08002 * 120.00255 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00005 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99804 * 180.02562 * 2 1 3 27 27 H 1.08001 * 119.99949 * 5.32584 * 3 2 1 28 28 H 1.08000 * 120.00162 * 186.24136 * 4 3 2 29 29 H 1.09004 * 109.47402 * 6.12246 * 5 4 3 30 30 H 1.09004 * 109.47247 * 246.11865 * 5 4 3 31 31 H 1.08996 * 109.47092 * 59.99226 * 6 5 4 32 32 H 1.09004 * 109.46442 * 299.99896 * 6 5 4 33 33 H 0.97000 * 120.00176 * 180.02562 * 12 11 9 34 34 H 1.08006 * 120.07543 * 0.34598 * 19 18 17 35 35 H 1.08001 * 119.62130 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.71256 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.12025 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2740 0.0000 4 6 3.3887 1.2765 -0.1066 5 6 4.1259 -0.0114 -0.3686 6 6 5.0214 0.1544 -1.5981 7 7 5.7385 -1.0975 -1.8524 8 6 6.9688 -1.4562 -1.3446 9 6 7.7517 -0.6706 -0.4871 10 1 7.4001 0.3011 -0.1736 11 6 8.9924 -1.1472 -0.0362 12 7 9.4173 -2.3224 -0.4150 13 14 10.0353 -0.1008 1.1070 14 1 9.2798 0.1710 2.3562 15 1 11.2893 -0.8254 1.4352 16 1 10.3656 1.1836 0.4388 17 7 7.2960 -2.6589 -1.7932 18 6 6.3246 -3.1258 -2.5889 19 6 6.1633 -4.3210 -3.3104 20 6 5.0366 -4.5189 -4.0526 21 6 4.0404 -3.5504 -4.1052 22 6 4.1735 -2.3681 -3.4066 23 6 5.3110 -2.1424 -2.6454 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.5277 2.2073 0.0868 28 1 3.9369 2.2016 -0.0056 29 1 3.4075 -0.8114 -0.5476 30 1 4.7398 -0.2612 0.4968 31 1 5.7397 0.9544 -1.4192 32 1 4.4075 0.4042 -2.4635 33 1 10.2747 -2.6519 -0.1030 34 1 6.9276 -5.0831 -3.2730 35 1 4.9163 -5.4390 -4.6053 36 1 3.1548 -3.7250 -4.6981 37 1 3.3954 -1.6207 -3.4530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713654659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:42 Heat of formation + Delta-G solvation = 80.487705 kcal Electronic energy + Delta-G solvation = -19471.550534 eV Core-core repulsion = 16600.220072 eV Total energy + Delta-G solvation = -2871.330462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16361 -38.07455 -37.42752 -35.46466 -34.80814 -32.67138 -31.06145 -30.44592 -28.91563 -27.64508 -24.67497 -23.13399 -22.64232 -22.36822 -21.15219 -19.27604 -18.80252 -17.90651 -17.56237 -16.60948 -16.48589 -15.98407 -15.66345 -15.37826 -14.94201 -14.58668 -14.41193 -14.24964 -13.52125 -13.27966 -13.24981 -13.04718 -13.00081 -12.74349 -12.42619 -12.33117 -12.10892 -12.00435 -11.85919 -11.68128 -11.42956 -11.08766 -10.79708 -9.80933 -9.24650 -9.03026 -8.62128 -8.49375 -6.54596 0.45310 0.51632 1.01171 1.40717 1.47047 1.55231 2.11673 2.19430 2.35813 2.44039 3.18392 3.62370 3.77160 3.92741 4.00290 4.17589 4.22045 4.30527 4.31371 4.43828 4.47843 4.61382 4.69246 4.82578 4.89586 4.91262 5.00070 5.10440 5.17409 5.26460 5.45376 5.57924 5.60396 5.68493 5.77953 5.91729 5.97864 6.03036 6.17159 6.23809 6.54148 6.79110 7.20711 8.08163 8.43177 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.007394 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.462435 B = 3785.754121 C = 5857.404088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.104 4.104 6 C 0.136 3.864 7 N -0.539 5.539 8 C 0.392 3.608 9 C -0.467 4.467 10 H 0.103 0.897 11 C 0.031 3.969 12 N -0.769 5.769 13 Si 0.999 3.001 14 H -0.254 1.254 15 H -0.272 1.272 16 H -0.253 1.253 17 N -0.586 5.586 18 C 0.052 3.948 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.164 4.164 22 C -0.106 4.106 23 C -0.020 4.020 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.283 0.717 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 7.081 0.475 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.150 4.150 4 C -0.159 4.159 5 C -0.143 4.143 6 C 0.014 3.986 7 N -0.234 5.234 8 C 0.153 3.847 9 C -0.504 4.504 10 H 0.121 0.879 11 C -0.192 4.192 12 N -0.393 5.393 13 Si 0.818 3.182 14 H -0.178 1.178 15 H -0.196 1.196 16 H -0.177 1.177 17 N -0.311 5.311 18 C -0.074 4.074 19 C -0.170 4.170 20 C -0.136 4.136 21 C -0.184 4.184 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.157 0.843 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.147 6.610 0.684 12.977 hybrid contribution 0.189 0.355 0.307 0.506 sum -10.958 6.965 0.992 13.022 Atomic orbital electron populations 1.24574 0.94944 1.03094 0.97640 1.22186 0.96278 0.97024 1.02245 1.22093 0.94325 0.97260 1.01342 1.23276 0.95288 0.97726 0.99637 1.21043 0.98194 0.97481 0.97537 1.21440 0.94895 0.84139 0.98176 1.45701 1.18406 1.16002 1.43283 1.20797 0.81785 0.90101 0.92020 1.18908 1.02360 1.03447 1.25705 0.87940 1.26969 0.98542 0.96208 0.97449 1.70114 1.18149 1.17313 1.33696 0.85021 0.76851 0.78347 0.78024 1.17843 1.19607 1.17666 1.71245 1.27518 1.11066 1.21305 1.20127 0.92661 0.95967 0.98622 1.20057 1.00095 0.95363 1.01524 1.20660 0.93155 1.00221 0.99606 1.20882 1.00635 0.93610 1.03254 1.20011 0.94727 0.99213 0.98796 1.19289 0.99432 0.91864 1.02251 0.86612 0.87425 0.88489 0.84286 0.84783 0.91707 0.92531 0.89481 0.89721 0.90662 0.87948 0.83848 0.83318 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 14.43 66.64 0.96 -2.07 16 2 C -0.16 -3.71 9.21 23.42 0.22 -3.50 16 3 C -0.13 -2.88 9.83 23.42 0.23 -2.65 16 4 C -0.14 -3.44 9.59 24.51 0.24 -3.21 16 5 C -0.10 -3.40 5.76 29.85 0.17 -3.23 16 6 C 0.14 4.94 5.89 86.38 0.51 5.45 16 7 N -0.54 -25.96 2.86 -512.93 -1.46 -27.42 16 8 C 0.39 22.12 7.41 133.69 0.99 23.11 16 9 C -0.47 -24.64 8.99 23.26 0.21 -24.43 16 10 H 0.10 4.80 7.10 -2.91 -0.02 4.78 16 11 C 0.03 1.57 5.50 85.39 0.47 2.04 16 12 N -0.77 -43.15 11.85 21.89 0.26 -42.89 16 13 Si 1.00 37.28 29.56 68.60 2.03 39.31 16 14 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 15 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 16 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 17 N -0.59 -35.94 9.33 -186.53 -1.74 -37.68 16 18 C 0.05 2.85 7.21 40.14 0.29 3.14 16 19 C -0.15 -7.06 10.07 22.39 0.23 -6.83 16 20 C -0.12 -4.38 9.96 22.02 0.22 -4.16 16 21 C -0.16 -5.75 10.04 22.40 0.22 -5.53 16 22 C -0.11 -4.21 10.04 22.32 0.22 -3.99 16 23 C -0.02 -1.00 6.88 39.05 0.27 -0.73 16 24 H 0.12 1.65 8.05 -2.91 -0.02 1.62 16 25 H 0.11 1.75 8.06 -2.91 -0.02 1.73 16 26 H 0.10 2.64 5.99 -2.91 -0.02 2.63 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.06 2.21 5.41 -2.38 -0.01 2.20 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.09 3.03 7.32 -2.39 -0.02 3.01 16 32 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.28 14.37 8.29 -92.71 -0.77 13.60 16 34 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -70.18 320.58 5.58 -64.59 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 1.06 Total: 30.67 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 5.44 Total: -26.58 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.95 Total: -107.99 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -70.18 5.58 -64.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713654659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.081 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds