Wall clock time and date at job start Mon Mar 30 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46893 * 109.47387 * 119.99848 * 2 1 3 5 5 C 1.46898 * 111.00268 * 274.99951 * 4 2 1 6 6 C 1.53000 * 109.47461 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46901 * 300.00125 * 6 5 4 8 8 C 1.53001 * 109.46957 * 60.00140 * 6 5 4 9 9 C 1.53005 * 109.46947 * 180.02562 * 6 5 4 10 10 C 1.50704 * 109.46433 * 180.02562 * 9 6 5 11 11 H 1.07997 * 120.00696 * 0.02562 * 10 9 6 12 12 C 1.37886 * 119.99183 * 179.97438 * 10 9 6 13 13 N 1.31521 * 119.99367 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00256 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46927 * 90.00200 * 14 12 10 16 16 H 1.48504 * 109.46825 * 209.99975 * 14 12 10 17 17 H 1.48499 * 109.47293 * 329.99901 * 14 12 10 18 18 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 19 19 C 1.35138 * 127.24935 * 99.99847 * 18 2 1 20 20 C 1.37810 * 114.75704 * 179.97438 * 19 18 2 21 21 N 1.30078 * 116.88599 * 0.02562 * 20 19 18 22 22 S 1.69611 * 107.15010 * 359.73093 * 21 20 19 23 23 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 24 24 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 25 25 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.00903 * 110.99825 * 38.95050 * 4 2 1 27 27 H 1.09002 * 109.47134 * 299.99766 * 5 4 2 28 28 H 1.09008 * 109.47231 * 59.99487 * 5 4 2 29 29 H 1.08996 * 109.47465 * 60.00356 * 7 6 5 30 30 H 1.09007 * 109.46729 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.47541 * 299.99189 * 7 6 5 32 32 H 1.09002 * 109.47173 * 60.00114 * 8 6 5 33 33 H 1.08996 * 109.47104 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.46847 * 299.99806 * 8 6 5 35 35 H 1.08992 * 109.46773 * 299.99733 * 9 6 5 36 36 H 1.08996 * 109.47280 * 60.00595 * 9 6 5 37 37 H 0.96994 * 119.99692 * 180.02562 * 13 12 10 38 38 H 1.07991 * 122.61999 * 359.97438 * 19 18 2 39 39 H 1.07996 * 121.55670 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5952 -0.5331 3.5744 7 6 1.6453 -1.6888 3.8952 8 6 3.9923 -1.0862 3.2861 9 6 2.6600 0.4200 4.7696 10 6 3.1655 -0.3244 5.9786 11 1 3.4159 -1.3721 5.9021 12 6 3.3093 0.3328 7.1822 13 7 3.7510 -0.3167 8.2372 14 14 2.8782 2.1455 7.3141 15 1 1.4487 2.2882 7.6906 16 1 3.7292 2.7824 8.3512 17 1 3.1140 2.8068 6.0056 18 6 2.0323 -0.7104 -1.2305 19 6 2.4811 -0.1474 -2.3742 20 6 2.8813 -1.0445 -3.3407 21 7 2.7827 -2.3080 -3.0475 22 16 2.1620 -2.4090 -1.4723 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.4495 -1.4978 1.4100 27 1 2.7589 1.0462 2.1181 28 1 1.0871 0.6165 2.5525 29 1 1.5987 -2.3678 3.0439 30 1 2.0103 -2.2269 4.7701 31 1 0.6499 -1.2948 4.1007 32 1 4.6690 -0.2628 3.0576 33 1 4.3573 -1.6249 4.1605 34 1 3.9456 -1.7652 2.4347 35 1 3.3364 1.2435 4.5413 36 1 1.6645 0.8136 4.9749 37 1 3.8518 0.1454 9.0840 38 1 2.5228 0.9219 -2.5193 39 1 3.2591 -0.7140 -4.2969 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716047523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:25 Heat of formation + Delta-G solvation = 4.431756 kcal Electronic energy + Delta-G solvation = -18382.908521 eV Core-core repulsion = 15643.723976 eV Total energy + Delta-G solvation = -2739.184544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94868 -39.18893 -36.85894 -34.45330 -32.29153 -30.26722 -29.22686 -27.90856 -26.81127 -25.87938 -24.02574 -22.68317 -20.90492 -19.46268 -18.84763 -18.49106 -16.89775 -16.43329 -16.04993 -15.87807 -15.39717 -15.15904 -14.81858 -14.59368 -14.20818 -14.12366 -13.87003 -13.67329 -13.47981 -12.91664 -12.80402 -12.69451 -12.64356 -12.40984 -12.19107 -12.06261 -11.82153 -11.70893 -11.35612 -11.30516 -11.00488 -10.82678 -10.68011 -10.36714 -9.59909 -9.33015 -8.19778 -6.20201 -0.13091 0.66109 1.07164 1.37333 1.39726 1.50425 1.65949 2.41397 3.11676 3.15549 3.68941 4.02945 4.15375 4.23475 4.25581 4.35144 4.38253 4.40668 4.70085 4.73423 4.80513 4.89991 4.94830 4.99826 5.06371 5.07095 5.12540 5.20144 5.22447 5.40046 5.47224 5.54093 5.64096 5.75031 5.77315 5.83881 6.06074 6.41492 6.45403 6.87802 7.42299 8.96660 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.003989 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.854731 B = 7017.670094 C = 7259.039544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.155 3.845 3 H 0.108 0.892 4 N -0.686 5.686 5 C 0.083 3.917 6 C -0.048 4.048 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.002 4.002 10 C -0.504 4.504 11 H 0.042 0.958 12 C -0.001 4.001 13 N -0.957 5.957 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.246 1.246 18 C -0.140 4.140 19 C -0.215 4.215 20 C 0.093 3.907 21 N -0.507 5.507 22 S 0.239 5.761 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.346 0.654 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.180 0.820 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 3.317 -22.981 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.043 3.957 3 H 0.126 0.874 4 N -0.318 5.318 5 C -0.046 4.046 6 C -0.049 4.049 7 C -0.183 4.183 8 C -0.167 4.167 9 C -0.040 4.040 10 C -0.542 4.542 11 H 0.060 0.940 12 C -0.197 4.197 13 N -0.599 5.599 14 Si 0.767 3.233 15 H -0.195 1.195 16 H -0.218 1.218 17 H -0.170 1.170 18 C -0.271 4.271 19 C -0.250 4.250 20 C -0.105 4.105 21 N -0.327 5.327 22 S 0.391 5.609 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.166 0.834 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.198 0.802 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.445 1.193 -22.817 23.740 hybrid contribution -0.601 2.366 0.770 2.560 sum -7.046 3.559 -22.047 23.418 Atomic orbital electron populations 1.22467 0.94203 1.02987 1.03659 1.19951 0.93656 0.97129 0.84930 0.87436 1.60535 1.57633 1.10081 1.03571 1.21899 0.99448 0.94501 0.88742 1.20354 0.95675 0.95525 0.93325 1.21708 0.98322 0.97803 1.00455 1.21518 0.95673 0.99931 0.99589 1.19589 0.95763 0.95246 0.93404 1.21458 1.41535 0.97197 0.94002 0.93989 1.25957 0.95283 1.02808 0.95607 1.70078 1.49521 1.38640 1.01648 0.85776 0.78365 0.80509 0.78665 1.19507 1.21758 1.16979 1.25668 1.01926 0.99633 0.99842 1.21577 1.06335 1.04308 0.92747 1.23340 0.96969 0.87655 1.02494 1.76797 1.23858 1.23036 1.09044 1.84189 1.58958 1.05771 1.11995 0.91196 0.90420 0.92190 0.83389 0.91071 0.94209 0.91767 0.94737 0.93289 0.94341 0.95565 0.91818 0.96749 0.96672 0.92972 0.80250 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.14 71.98 0.66 -1.91 16 2 C 0.16 2.76 3.08 44.17 0.14 2.89 16 3 H 0.11 1.75 7.80 -2.39 -0.02 1.74 16 4 N -0.69 -15.53 5.28 -495.45 -2.62 -18.15 16 5 C 0.08 2.23 4.44 86.30 0.38 2.61 16 6 C -0.05 -1.72 0.60 -52.18 -0.03 -1.75 16 7 C -0.13 -4.32 7.89 71.98 0.57 -3.75 16 8 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 9 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 10 C -0.50 -27.94 8.20 25.60 0.21 -27.73 16 11 H 0.04 2.58 5.92 -2.91 -0.02 2.56 16 12 C 0.00 -0.07 5.47 84.66 0.46 0.40 16 13 N -0.96 -60.08 13.96 21.45 0.30 -59.78 16 14 Si 0.94 43.95 27.47 68.60 1.88 45.83 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 18 C -0.14 -2.63 5.52 24.97 0.14 -2.49 16 19 C -0.21 -3.37 10.17 21.45 0.22 -3.15 16 20 C 0.09 1.56 11.27 84.85 0.96 2.52 16 21 N -0.51 -11.78 12.09 -62.60 -0.76 -12.54 16 22 S 0.24 5.30 23.53 -56.49 -1.33 3.97 16 23 H 0.07 1.05 7.45 -2.39 -0.02 1.03 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 26 H 0.35 7.67 6.51 -89.69 -0.58 7.08 16 27 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 28 H 0.04 1.00 7.44 -2.38 -0.02 0.98 16 29 H 0.06 1.82 6.57 -2.39 -0.02 1.80 16 30 H 0.03 1.42 6.62 -2.38 -0.02 1.41 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 1.12 6.62 -2.39 -0.02 1.11 16 34 H 0.06 2.11 7.60 -2.39 -0.02 2.09 16 35 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 36 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.18 1.77 8.06 -2.92 -0.02 1.75 16 39 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -66.90 322.39 2.25 -64.66 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.39 Total: 11.89 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 4.37 Total: -35.88 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -3.08 Total: -90.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.33 Total: 3.97 kcal Total: -66.90 2.25 -64.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716047523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.088 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds