Wall clock time and date at job start Mon Mar 30 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00262 * 3 2 1 5 5 H 1.48501 * 109.47106 * 30.00184 * 3 2 1 6 6 H 1.48505 * 109.47346 * 150.00199 * 3 2 1 7 7 C 1.37873 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00234 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99714 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46894 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47238 * 179.97438 * 12 11 10 14 14 C 1.50699 * 108.48853 * 297.95549 * 13 12 11 15 15 O 1.20829 * 120.00007 * 113.05791 * 14 13 12 16 16 O 1.34230 * 120.00486 * 293.05448 * 14 13 12 17 17 C 1.51850 * 108.65010 * 180.02562 * 13 12 11 18 18 C 1.53029 * 110.71392 * 172.37750 * 17 13 12 19 19 C 1.51382 * 108.61864 * 85.75593 * 18 17 13 20 20 C 1.29519 * 120.35868 * 288.10047 * 19 18 17 21 21 C 1.51376 * 120.36166 * 0.02562 * 20 19 18 22 22 C 1.51855 * 108.61574 * 55.93662 * 13 12 11 23 23 H 0.97001 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46897 * 59.99606 * 9 7 2 25 25 H 1.08996 * 109.46725 * 300.00023 * 9 7 2 26 26 H 1.09000 * 109.47611 * 60.00158 * 11 10 9 27 27 H 1.09001 * 109.47429 * 299.99925 * 11 10 9 28 28 H 1.09001 * 109.47067 * 60.00443 * 12 11 10 29 29 H 1.08991 * 109.47362 * 299.99772 * 12 11 10 30 30 H 0.96696 * 117.00326 * 179.97438 * 16 14 13 31 31 H 1.08992 * 109.21982 * 52.07291 * 17 13 12 32 32 H 1.08998 * 109.22061 * 292.68185 * 17 13 12 33 33 H 1.08998 * 109.61427 * 205.49147 * 18 17 13 34 34 H 1.09002 * 109.61831 * 326.01913 * 18 17 13 35 35 H 1.07993 * 119.81933 * 108.07283 * 19 18 17 36 36 H 1.08003 * 119.82275 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.60761 * 191.63942 * 21 20 19 38 38 H 1.08998 * 109.61057 * 312.15325 * 21 20 19 39 39 H 1.09006 * 109.25132 * 67.31257 * 22 13 12 40 40 H 1.08998 * 109.19111 * 307.92587 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5412 -0.0001 11 6 5.4124 -2.6540 -0.0001 12 6 5.8069 -4.1323 -0.0009 13 6 7.3322 -4.2531 -0.0016 14 6 7.8610 -3.6224 -1.2640 15 8 8.5230 -2.6134 -1.2038 16 8 7.5966 -4.1815 -2.4553 17 6 7.7027 -5.7257 -0.0030 18 6 9.2105 -5.9043 -0.1936 19 6 9.8832 -5.8103 1.1593 20 6 9.9733 -4.6704 1.7677 21 6 9.4066 -3.4180 1.1340 22 6 7.8796 -3.4883 1.1906 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8894 26 1 5.8153 -2.1706 0.8899 27 1 5.8152 -2.1704 -0.8901 28 1 5.4042 -4.6153 -0.8912 29 1 5.4043 -4.6163 0.8888 30 1 7.9569 -3.7406 -3.2369 31 1 7.1764 -6.2273 -0.8150 32 1 7.4057 -6.1713 0.9464 33 1 9.4104 -6.8810 -0.6344 34 1 9.5922 -5.1200 -0.8472 35 1 10.2898 -6.6985 1.6198 36 1 10.4547 -4.6133 2.7328 37 1 9.7531 -2.5418 1.6821 38 1 9.7309 -3.3546 0.0953 39 1 7.5780 -3.9912 2.1095 40 1 7.4730 -2.4771 1.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718131319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:22 Heat of formation + Delta-G solvation = -132.126537 kcal Electronic energy + Delta-G solvation = -21248.386372 eV Core-core repulsion = 18028.234593 eV Total energy + Delta-G solvation = -3220.151778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43797 -38.27244 -37.02362 -36.20026 -34.50056 -32.62910 -32.05150 -29.72429 -27.73763 -25.61346 -24.29856 -23.68597 -21.90492 -21.82122 -19.81860 -18.23844 -17.85295 -17.09042 -16.77961 -16.21495 -15.79335 -15.28584 -15.17291 -14.48272 -14.38554 -13.91736 -13.69544 -13.32802 -13.17163 -12.85332 -12.57255 -12.40559 -12.18479 -11.89236 -11.64551 -11.57081 -11.21359 -11.16280 -11.11675 -10.81260 -10.68328 -10.47787 -10.26229 -10.13030 -9.87872 -9.21341 -9.16976 -8.86981 -8.50037 -6.13281 -4.12676 2.06929 2.18679 2.93437 3.24314 3.31298 3.33440 4.19491 4.34574 4.37041 4.47073 4.76770 4.85343 4.96703 5.00542 5.18074 5.21024 5.23960 5.32232 5.36490 5.45899 5.54850 5.60382 5.70784 5.80309 5.83216 5.87542 5.99081 6.04048 6.14513 6.17106 6.29087 6.42804 6.54729 6.58677 6.74053 6.96943 7.56952 7.82444 7.96867 8.62997 8.97435 9.45862 10.99635 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.004176 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.312969 B = 6702.640388 C = 6775.791495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.379 6.379 11 C 0.054 3.946 12 C -0.112 4.112 13 C -0.038 4.038 14 C 0.487 3.513 15 O -0.511 6.511 16 O -0.512 6.512 17 C -0.103 4.103 18 C -0.093 4.093 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.104 4.104 22 C -0.103 4.103 23 H 0.267 0.733 24 H 0.004 0.996 25 H -0.002 1.002 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.167 -11.384 0.071 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.298 6.298 11 C -0.024 4.024 12 C -0.149 4.149 13 C -0.039 4.039 14 C 0.330 3.670 15 O -0.399 6.399 16 O -0.323 6.323 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.184 4.184 20 C -0.170 4.170 21 C -0.141 4.141 22 C -0.140 4.140 23 H 0.077 0.923 24 H 0.022 0.978 25 H 0.016 0.984 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.265 0.735 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.875 -11.333 0.435 23.757 hybrid contribution 0.837 1.545 -0.497 1.826 sum 21.712 -9.788 -0.062 23.816 Atomic orbital electron populations 1.69869 1.06040 1.27138 1.50239 1.24751 0.94801 0.98731 0.94562 0.86870 0.80398 0.83776 0.78863 1.19880 1.20663 1.19074 1.20884 0.88168 0.95389 1.51397 0.89877 1.20618 0.96218 0.79334 0.94434 1.87886 1.17117 1.29762 1.95055 1.22464 0.85197 0.95313 0.99415 1.21660 0.90580 0.97530 1.05141 1.20313 0.97092 0.96711 0.89759 1.23550 0.76203 0.81945 0.85307 1.90676 1.37148 1.24764 1.87337 1.84557 1.73219 1.57383 1.17156 1.21376 0.95738 0.92760 1.04150 1.20853 0.94566 1.02231 0.95362 1.22507 1.00902 0.97894 0.97094 1.22715 0.99604 0.95123 0.99589 1.21096 0.94675 0.95765 1.02517 1.21398 0.95348 1.01207 0.96080 0.92314 0.97838 0.98423 0.93506 0.94938 0.89659 0.89210 0.73475 0.89887 0.89949 0.90820 0.91769 0.87458 0.87569 0.91215 0.89267 0.90022 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.67 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.67 9.99 -34.44 -0.34 -16.01 16 8 H 0.08 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.17 4.40 4.76 36.01 0.17 4.58 16 10 O -0.38 -8.96 10.33 -35.23 -0.36 -9.33 16 11 C 0.05 0.97 5.24 37.16 0.19 1.16 16 12 C -0.11 -1.56 4.50 -26.73 -0.12 -1.68 16 13 C -0.04 -0.44 0.48 -156.82 -0.08 -0.51 16 14 C 0.49 6.16 3.41 36.01 0.12 6.28 16 15 O -0.51 -7.59 14.46 -18.75 -0.27 -7.86 16 16 O -0.51 -5.35 13.07 -39.26 -0.51 -5.86 16 17 C -0.10 -0.96 4.26 -27.30 -0.12 -1.08 16 18 C -0.09 -0.82 5.51 -27.53 -0.15 -0.97 16 19 C -0.17 -1.45 9.34 -35.28 -0.33 -1.78 16 20 C -0.15 -1.43 9.34 -35.28 -0.33 -1.76 16 21 C -0.10 -1.14 5.10 -27.57 -0.14 -1.28 16 22 C -0.10 -1.20 3.89 -27.33 -0.11 -1.31 16 23 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 25 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 26 H 0.05 0.81 6.12 -51.93 -0.32 0.49 16 27 H 0.03 0.60 7.23 -51.93 -0.38 0.22 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.41 2.64 9.10 45.56 0.41 3.06 16 31 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 32 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 5.43 -51.93 -0.28 0.36 16 35 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.11 4.20 -51.93 -0.22 0.89 16 39 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 40 H 0.08 1.09 5.78 -51.93 -0.30 0.79 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -33.76 312.74 -6.86 -40.62 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.20 Total: -0.07 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.32 Total: -12.27 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.15 Total: -23.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.76 -6.86 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718131319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.507 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds