Wall clock time and date at job start Mon Mar 30 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00262 * 3 2 1 5 5 H 1.48501 * 109.47106 * 30.00184 * 3 2 1 6 6 H 1.48505 * 109.47346 * 150.00199 * 3 2 1 7 7 C 1.37873 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00234 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99714 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46894 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47238 * 179.97438 * 12 11 10 14 14 C 1.50699 * 108.48853 * 297.95549 * 13 12 11 15 15 O 1.20829 * 120.00007 * 113.05791 * 14 13 12 16 16 O 1.34230 * 120.00486 * 293.05448 * 14 13 12 17 17 C 1.51850 * 108.65010 * 180.02562 * 13 12 11 18 18 C 1.53029 * 110.71392 * 172.37750 * 17 13 12 19 19 C 1.51382 * 108.61864 * 85.75593 * 18 17 13 20 20 C 1.29519 * 120.35868 * 288.10047 * 19 18 17 21 21 C 1.51376 * 120.36166 * 0.02562 * 20 19 18 22 22 C 1.51855 * 108.61574 * 55.93662 * 13 12 11 23 23 H 0.97001 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46897 * 59.99606 * 9 7 2 25 25 H 1.08996 * 109.46725 * 300.00023 * 9 7 2 26 26 H 1.09000 * 109.47611 * 60.00158 * 11 10 9 27 27 H 1.09001 * 109.47429 * 299.99925 * 11 10 9 28 28 H 1.09001 * 109.47067 * 60.00443 * 12 11 10 29 29 H 1.08991 * 109.47362 * 299.99772 * 12 11 10 30 30 H 0.96696 * 117.00326 * 179.97438 * 16 14 13 31 31 H 1.08992 * 109.21982 * 52.07291 * 17 13 12 32 32 H 1.08998 * 109.22061 * 292.68185 * 17 13 12 33 33 H 1.08998 * 109.61427 * 205.49147 * 18 17 13 34 34 H 1.09002 * 109.61831 * 326.01913 * 18 17 13 35 35 H 1.07993 * 119.81933 * 108.07283 * 19 18 17 36 36 H 1.08003 * 119.82275 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.60761 * 191.63942 * 21 20 19 38 38 H 1.08998 * 109.61057 * 312.15325 * 21 20 19 39 39 H 1.09006 * 109.25132 * 67.31257 * 22 13 12 40 40 H 1.08998 * 109.19111 * 307.92587 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5412 -0.0001 11 6 5.4124 -2.6540 -0.0001 12 6 5.8069 -4.1323 -0.0009 13 6 7.3322 -4.2531 -0.0016 14 6 7.8610 -3.6224 -1.2640 15 8 8.5230 -2.6134 -1.2038 16 8 7.5966 -4.1815 -2.4553 17 6 7.7027 -5.7257 -0.0030 18 6 9.2105 -5.9043 -0.1936 19 6 9.8832 -5.8103 1.1593 20 6 9.9733 -4.6704 1.7677 21 6 9.4066 -3.4180 1.1340 22 6 7.8796 -3.4883 1.1906 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8894 26 1 5.8153 -2.1706 0.8899 27 1 5.8152 -2.1704 -0.8901 28 1 5.4042 -4.6153 -0.8912 29 1 5.4043 -4.6163 0.8888 30 1 7.9569 -3.7406 -3.2369 31 1 7.1764 -6.2273 -0.8150 32 1 7.4057 -6.1713 0.9464 33 1 9.4104 -6.8810 -0.6344 34 1 9.5922 -5.1200 -0.8472 35 1 10.2898 -6.6985 1.6198 36 1 10.4547 -4.6133 2.7328 37 1 9.7531 -2.5418 1.6821 38 1 9.7309 -3.3546 0.0953 39 1 7.5780 -3.9912 2.1095 40 1 7.4730 -2.4771 1.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718131319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:21 Heat of formation + Delta-G solvation = -154.730408 kcal Electronic energy + Delta-G solvation = -21249.366549 eV Core-core repulsion = 18028.234593 eV Total energy + Delta-G solvation = -3221.131956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38299 -39.24404 -38.62333 -37.14506 -35.60055 -34.78208 -32.84867 -31.14805 -29.52060 -26.66175 -25.13754 -24.66117 -23.97378 -23.00972 -20.73678 -19.15920 -18.94192 -18.76239 -17.98662 -17.45604 -17.09302 -16.66851 -16.40608 -16.25935 -15.33112 -15.10847 -14.85828 -14.65829 -14.26210 -14.16748 -13.95728 -13.78430 -13.16246 -12.99871 -12.91897 -12.77854 -12.59908 -12.40771 -12.35500 -12.10099 -11.87875 -11.82141 -11.47184 -11.37829 -11.26430 -11.05477 -10.94763 -10.44108 -9.88667 -8.41132 -6.49483 1.14796 1.30422 1.32443 1.43542 1.44976 2.07315 2.25531 2.82492 2.91097 3.49446 3.58592 3.83854 3.96364 4.08035 4.14462 4.16070 4.32259 4.35831 4.44600 4.46717 4.50872 4.58820 4.61789 4.77608 4.86869 4.87747 4.95279 5.05400 5.08914 5.16242 5.20159 5.26591 5.35926 5.37897 5.61723 5.82019 5.87997 6.06349 6.53632 6.64589 6.96363 7.14831 8.75749 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.004176 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.312969 B = 6702.640388 C = 6775.791495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.548 4.548 8 H 0.035 0.965 9 C 0.179 3.821 10 O -0.401 6.401 11 C 0.048 3.952 12 C -0.104 4.104 13 C -0.031 4.031 14 C 0.486 3.514 15 O -0.538 6.538 16 O -0.509 6.509 17 C -0.100 4.100 18 C -0.093 4.093 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.101 4.101 22 C -0.105 4.105 23 H 0.275 0.725 24 H 0.013 0.987 25 H 0.006 0.994 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.423 0.577 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.219 -11.544 0.366 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.586 4.586 8 H 0.053 0.947 9 C 0.103 3.897 10 O -0.321 6.321 11 C -0.029 4.029 12 C -0.142 4.142 13 C -0.033 4.033 14 C 0.330 3.670 15 O -0.428 6.428 16 O -0.322 6.322 17 C -0.137 4.137 18 C -0.130 4.130 19 C -0.178 4.178 20 C -0.181 4.181 21 C -0.138 4.138 22 C -0.142 4.142 23 H 0.084 0.916 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.285 0.715 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.937 -11.523 0.710 25.679 hybrid contribution 0.164 1.493 -0.645 1.634 sum 23.101 -10.030 0.065 25.185 Atomic orbital electron populations 1.70010 1.08086 1.28870 1.50727 1.25765 0.95776 1.03153 0.93363 0.85686 0.79436 0.77920 0.79824 1.18467 1.19312 1.17321 1.21131 0.90610 0.94113 1.52710 0.94652 1.20340 0.93615 0.80819 0.94925 1.87838 1.20669 1.28393 1.95196 1.22771 0.82052 0.98418 0.99671 1.21628 0.92358 0.94533 1.05634 1.20323 0.95072 0.98400 0.89466 1.23753 0.75677 0.81510 0.86072 1.90670 1.38435 1.25924 1.87798 1.84516 1.72977 1.57323 1.17394 1.21391 0.96331 0.90809 1.05165 1.20873 0.93946 1.02776 0.95445 1.22710 1.00010 0.98342 0.96732 1.22737 1.00458 0.94518 1.00380 1.21008 0.94202 0.96859 1.01765 1.21403 0.95900 1.00206 0.96661 0.91633 0.96964 0.97673 0.92511 0.95388 0.89768 0.88172 0.71534 0.89223 0.88688 0.88939 0.93147 0.85492 0.86247 0.91424 0.90815 0.88758 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.55 -33.87 9.99 25.60 0.26 -33.61 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.18 9.28 4.76 71.24 0.34 9.62 16 10 O -0.40 -19.10 10.33 -148.98 -1.54 -20.64 16 11 C 0.05 1.69 5.24 71.98 0.38 2.07 16 12 C -0.10 -2.78 4.50 30.60 0.14 -2.65 16 13 C -0.03 -0.69 0.48 -53.68 -0.03 -0.71 16 14 C 0.49 11.83 3.41 71.24 0.24 12.07 16 15 O -0.54 -15.80 14.46 21.95 0.32 -15.48 16 16 O -0.51 -9.96 13.07 -51.41 -0.67 -10.63 16 17 C -0.10 -1.62 4.26 30.23 0.13 -1.49 16 18 C -0.09 -1.41 5.51 30.07 0.17 -1.24 16 19 C -0.16 -2.34 9.34 27.38 0.26 -2.08 16 20 C -0.16 -2.71 9.34 27.38 0.26 -2.45 16 21 C -0.10 -2.13 5.10 30.05 0.15 -1.98 16 22 C -0.10 -2.32 3.89 30.21 0.12 -2.20 16 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 25 H 0.01 0.28 7.57 -2.39 -0.02 0.26 16 26 H 0.06 1.91 6.12 -2.39 -0.01 1.90 16 27 H 0.03 1.02 7.23 -2.39 -0.02 1.00 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.42 4.95 9.10 -74.06 -0.67 4.28 16 31 H 0.09 1.36 8.02 -2.39 -0.02 1.34 16 32 H 0.09 1.34 7.85 -2.39 -0.02 1.32 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.93 5.43 -2.39 -0.01 0.91 16 35 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.07 1.80 4.20 -2.39 -0.01 1.79 16 39 H 0.09 1.81 7.86 -2.38 -0.02 1.79 16 40 H 0.06 1.62 5.78 -2.39 -0.01 1.61 16 Total: -1.00 -73.93 312.74 3.47 -70.46 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.31 Total: 12.30 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 2.87 Total: -23.11 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.30 Total: -58.85 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.89 Total: -46.74 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -73.93 3.47 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718131319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.273 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds