Wall clock time and date at job start Mon Mar 30 2020 07:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00070 * 2 1 4 4 H 1.08999 * 109.77791 * 30.47318 * 3 2 1 5 5 C 1.54210 * 109.62681 * 269.99553 * 3 2 1 6 6 C 1.45575 * 112.43253 * 160.10297 * 5 3 2 7 7 C 1.54128 * 112.28422 * 61.94679 * 6 5 3 8 8 C 1.50609 * 108.75936 * 280.09611 * 7 6 5 9 9 C 1.54643 * 109.74437 * 214.24939 * 8 7 6 10 10 C 1.55247 * 102.32483 * 141.63433 * 9 8 7 11 11 C 1.54914 * 100.92379 * 325.72473 * 10 9 8 12 12 C 1.53000 * 110.39390 * 155.51010 * 11 10 9 13 13 C 1.50702 * 110.30911 * 277.63556 * 11 10 9 14 14 H 1.08002 * 120.00299 * 357.17107 * 13 11 10 15 15 C 1.37884 * 119.99942 * 176.88666 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 O 1.43439 * 110.55535 * 332.45792 * 8 7 6 22 22 C 1.54196 * 112.53043 * 94.01866 * 8 7 6 23 23 C 1.50469 * 109.62280 * 150.94874 * 3 2 1 24 24 H 1.08995 * 109.47200 * 300.00525 * 1 2 3 25 25 H 1.09001 * 109.46926 * 60.00159 * 1 2 3 26 26 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09005 * 108.88602 * 39.34499 * 5 3 2 28 28 H 1.08994 * 108.88730 * 280.86768 * 5 3 2 29 29 H 1.08998 * 108.92122 * 301.23093 * 6 5 3 30 30 H 1.08997 * 108.91883 * 182.67253 * 6 5 3 31 31 H 1.08998 * 109.58980 * 160.31091 * 7 6 5 32 32 H 1.09005 * 109.71073 * 39.95211 * 7 6 5 33 33 H 1.08996 * 110.83876 * 259.84401 * 9 8 7 34 34 H 1.09002 * 110.83293 * 23.22727 * 9 8 7 35 35 H 1.08999 * 111.12902 * 207.81457 * 10 9 8 36 36 H 1.09000 * 111.12664 * 83.63663 * 10 9 8 37 37 H 1.09003 * 109.46883 * 181.44370 * 12 11 10 38 38 H 1.09002 * 109.46998 * 301.44340 * 12 11 10 39 39 H 1.09000 * 109.47029 * 61.45047 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.09003 * 108.80997 * 79.31601 * 22 8 7 42 42 H 1.08995 * 108.81037 * 197.59512 * 22 8 7 43 43 H 1.08994 * 108.87840 * 334.69102 * 23 3 2 44 44 H 1.08997 * 108.87799 * 93.14403 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3527 2.0019 0.5202 5 6 2.2210 1.7786 -1.4525 6 6 2.3633 3.2240 -1.5508 7 6 3.5936 3.7438 -0.7815 8 6 3.2490 3.8293 0.6822 9 6 3.9782 5.0341 1.3210 10 6 2.9103 5.5842 2.3045 11 6 1.6084 5.2942 1.5164 12 6 0.4204 5.1784 2.4736 13 6 1.3579 6.3804 0.5022 14 1 2.0235 7.2290 0.4442 15 6 0.2823 6.2880 -0.3555 16 7 -0.5282 5.2547 -0.2848 17 14 -0.0237 7.6305 -1.6177 18 1 1.1489 7.7355 -2.5229 19 1 -1.2339 7.2972 -2.4113 20 1 -0.2298 8.9263 -0.9222 21 8 1.8410 4.0403 0.8566 22 6 3.6551 2.5611 1.4597 23 6 3.3476 1.2631 0.6882 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.3664 1.4665 -2.0528 28 1 3.1200 1.3076 -1.8501 29 1 1.4681 3.6956 -1.1456 30 1 2.4610 3.4989 -2.6010 31 1 3.8650 4.7325 -1.1514 32 1 4.4304 3.0593 -0.9206 33 1 4.8686 4.7080 1.8584 34 1 4.2337 5.7775 0.5659 35 1 3.0406 6.6540 2.4678 36 1 2.9278 5.0394 3.2484 37 1 -0.4819 4.9492 1.9066 38 1 0.6098 4.3817 3.1930 39 1 0.2870 6.1219 3.0029 40 1 -1.2851 5.1898 -0.8880 41 1 4.7246 2.6026 1.6658 42 1 3.1171 2.5427 2.4075 43 1 3.3583 0.4267 1.3870 44 1 4.1244 1.1052 -0.0599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718735170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:16 Heat of formation + Delta-G solvation = -104.101395 kcal Electronic energy + Delta-G solvation = -23463.568053 eV Core-core repulsion = 20380.464631 eV Total energy + Delta-G solvation = -3083.103422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69622 -37.69306 -35.21338 -32.82306 -31.70515 -30.95587 -30.49627 -27.64830 -26.23438 -25.16462 -23.81912 -23.45776 -21.14096 -20.13118 -19.24292 -18.37633 -16.68532 -16.06353 -15.18417 -14.92829 -14.60532 -14.41189 -14.11789 -13.66704 -13.37971 -12.85385 -12.76721 -12.68312 -12.26747 -11.98796 -11.63026 -11.36224 -11.29559 -11.23748 -10.87675 -10.79918 -10.66455 -10.56743 -10.55599 -10.22788 -10.14267 -10.03634 -9.91817 -9.54826 -9.44327 -9.26541 -8.97986 -8.83511 -8.41738 -7.80326 -5.93927 -4.08463 3.30110 3.35486 3.38514 4.27443 4.42561 4.94775 5.25163 5.30685 5.42517 5.55251 5.65300 5.74335 5.78377 5.82279 5.89832 5.92877 5.99525 6.04408 6.10221 6.18084 6.26424 6.33697 6.39534 6.48992 6.50150 6.61580 6.67931 6.77219 6.80406 6.81135 6.88152 6.91713 6.94693 7.02696 7.13351 7.19918 7.43304 7.69483 7.79705 7.82282 8.06847 8.38641 8.72102 9.05283 9.62339 11.07356 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.008875 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.002815 B = 3154.322739 C = 3638.379828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.398 6.398 3 C 0.082 3.918 4 H 0.100 0.900 5 C -0.117 4.117 6 C -0.130 4.130 7 C -0.105 4.105 8 C 0.115 3.885 9 C -0.137 4.137 10 C -0.146 4.146 11 C 0.231 3.769 12 C -0.129 4.129 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.087 3.913 16 N -0.860 5.860 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 O -0.343 6.343 22 C -0.115 4.115 23 C -0.108 4.108 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.121 0.879 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.036 0.964 40 H 0.258 0.742 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -5.783 1.360 7.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.318 6.318 3 C 0.026 3.974 4 H 0.118 0.882 5 C -0.155 4.155 6 C -0.167 4.167 7 C -0.143 4.143 8 C 0.075 3.925 9 C -0.174 4.174 10 C -0.184 4.184 11 C 0.194 3.806 12 C -0.186 4.186 13 C -0.571 4.571 14 H 0.071 0.929 15 C -0.118 4.118 16 N -0.497 5.497 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.205 1.205 21 O -0.263 6.263 22 C -0.153 4.153 23 C -0.145 4.145 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.946 -6.175 1.221 8.005 hybrid contribution -0.097 1.172 -0.807 1.426 sum 4.849 -5.003 0.414 6.980 Atomic orbital electron populations 1.22663 0.81664 1.01220 1.00538 1.87780 1.19318 1.29480 1.95205 1.22087 0.95605 0.83854 0.95883 0.88175 1.20786 1.00480 0.97447 0.96768 1.20370 1.02600 0.95075 0.98624 1.21543 0.97205 1.00320 0.95215 1.21452 0.85394 0.92285 0.93412 1.23189 0.97479 0.97865 0.98908 1.23274 0.97788 1.00084 0.97247 1.19805 0.89086 0.82784 0.88917 1.21725 1.02411 0.97436 0.97068 1.21244 1.11312 1.05993 1.18560 0.92921 1.24868 0.95568 0.94804 0.96572 1.69934 1.14802 1.28055 1.36919 0.86903 0.77636 0.82771 0.82037 1.20338 1.21339 1.20452 1.88567 1.17871 1.40231 1.79644 1.22369 0.99882 0.93976 0.99062 1.21322 0.96183 0.97671 0.99361 0.93922 0.94158 0.90813 0.93121 0.93723 0.86083 0.94218 0.92103 0.93269 0.92809 0.91209 0.91861 0.93298 0.89455 0.96795 0.94457 0.93202 0.92357 0.91958 0.92060 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.79 101.05 1.09 1.65 16 2 O -0.40 -7.15 10.24 -35.23 -0.36 -7.51 16 3 C 0.08 1.52 2.27 -27.36 -0.06 1.46 16 4 H 0.10 2.13 5.42 -51.93 -0.28 1.85 16 5 C -0.12 -2.13 4.92 -29.60 -0.15 -2.28 16 6 C -0.13 -2.58 5.19 -29.64 -0.15 -2.73 16 7 C -0.11 -1.97 5.10 -27.34 -0.14 -2.11 16 8 C 0.12 2.21 0.73 -90.33 -0.07 2.14 16 9 C -0.14 -2.52 5.76 -24.68 -0.14 -2.67 16 10 C -0.15 -2.93 6.02 -24.53 -0.15 -3.08 16 11 C 0.23 5.39 0.73 -90.76 -0.07 5.32 16 12 C -0.13 -2.99 8.75 37.16 0.33 -2.66 16 13 C -0.53 -13.69 8.02 -34.44 -0.28 -13.97 16 14 H 0.05 1.37 7.72 -52.49 -0.41 0.96 16 15 C 0.09 2.25 5.28 -17.82 -0.09 2.16 16 16 N -0.86 -22.85 10.75 55.43 0.60 -22.25 16 17 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 O -0.34 -7.76 5.26 -35.23 -0.19 -7.94 16 22 C -0.12 -1.94 4.87 -25.53 -0.12 -2.07 16 23 C -0.11 -1.79 5.07 -27.42 -0.14 -1.93 16 24 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.04 0.63 7.74 -51.93 -0.40 0.23 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 28 H 0.04 0.75 7.46 -51.93 -0.39 0.37 16 29 H 0.12 2.88 6.02 -51.93 -0.31 2.57 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.18 7.29 -51.93 -0.38 0.80 16 32 H 0.05 0.82 7.00 -51.93 -0.36 0.45 16 33 H 0.05 0.86 7.44 -51.93 -0.39 0.47 16 34 H 0.07 1.33 7.34 -51.93 -0.38 0.95 16 35 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 36 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 37 H 0.09 2.23 6.19 -51.93 -0.32 1.91 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.06 0.86 7.58 -51.93 -0.39 0.47 16 42 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 43 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 44 H 0.06 0.90 6.64 -51.93 -0.34 0.55 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -26.35 323.23 -7.91 -34.26 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.67 Total: 3.81 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -0.14 Total: -20.77 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.60 Total: -22.25 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.55 Total: -15.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.35 -7.91 -34.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.837 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds