Wall clock time and date at job start Mon Mar 30 2020 07:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00070 * 2 1 4 4 H 1.08999 * 109.77791 * 30.47318 * 3 2 1 5 5 C 1.54210 * 109.62681 * 269.99553 * 3 2 1 6 6 C 1.45575 * 112.43253 * 160.10297 * 5 3 2 7 7 C 1.54128 * 112.28422 * 61.94679 * 6 5 3 8 8 C 1.50609 * 108.75936 * 280.09611 * 7 6 5 9 9 C 1.54643 * 109.74437 * 214.24939 * 8 7 6 10 10 C 1.55247 * 102.32483 * 141.63433 * 9 8 7 11 11 C 1.54914 * 100.92379 * 325.72473 * 10 9 8 12 12 C 1.53000 * 110.39390 * 155.51010 * 11 10 9 13 13 C 1.50702 * 110.30911 * 277.63556 * 11 10 9 14 14 H 1.08002 * 120.00299 * 357.17107 * 13 11 10 15 15 C 1.37884 * 119.99942 * 176.88666 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 O 1.43439 * 110.55535 * 332.45792 * 8 7 6 22 22 C 1.54196 * 112.53043 * 94.01866 * 8 7 6 23 23 C 1.50469 * 109.62280 * 150.94874 * 3 2 1 24 24 H 1.08995 * 109.47200 * 300.00525 * 1 2 3 25 25 H 1.09001 * 109.46926 * 60.00159 * 1 2 3 26 26 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09005 * 108.88602 * 39.34499 * 5 3 2 28 28 H 1.08994 * 108.88730 * 280.86768 * 5 3 2 29 29 H 1.08998 * 108.92122 * 301.23093 * 6 5 3 30 30 H 1.08997 * 108.91883 * 182.67253 * 6 5 3 31 31 H 1.08998 * 109.58980 * 160.31091 * 7 6 5 32 32 H 1.09005 * 109.71073 * 39.95211 * 7 6 5 33 33 H 1.08996 * 110.83876 * 259.84401 * 9 8 7 34 34 H 1.09002 * 110.83293 * 23.22727 * 9 8 7 35 35 H 1.08999 * 111.12902 * 207.81457 * 10 9 8 36 36 H 1.09000 * 111.12664 * 83.63663 * 10 9 8 37 37 H 1.09003 * 109.46883 * 181.44370 * 12 11 10 38 38 H 1.09002 * 109.46998 * 301.44340 * 12 11 10 39 39 H 1.09000 * 109.47029 * 61.45047 * 12 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 41 41 H 1.09003 * 108.80997 * 79.31601 * 22 8 7 42 42 H 1.08995 * 108.81037 * 197.59512 * 22 8 7 43 43 H 1.08994 * 108.87840 * 334.69102 * 23 3 2 44 44 H 1.08997 * 108.87799 * 93.14403 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3527 2.0019 0.5202 5 6 2.2210 1.7786 -1.4525 6 6 2.3633 3.2240 -1.5508 7 6 3.5936 3.7438 -0.7815 8 6 3.2490 3.8293 0.6822 9 6 3.9782 5.0341 1.3210 10 6 2.9103 5.5842 2.3045 11 6 1.6084 5.2942 1.5164 12 6 0.4204 5.1784 2.4736 13 6 1.3579 6.3804 0.5022 14 1 2.0235 7.2290 0.4442 15 6 0.2823 6.2880 -0.3555 16 7 -0.5282 5.2547 -0.2848 17 14 -0.0237 7.6305 -1.6177 18 1 1.1489 7.7355 -2.5229 19 1 -1.2339 7.2972 -2.4113 20 1 -0.2298 8.9263 -0.9222 21 8 1.8410 4.0403 0.8566 22 6 3.6551 2.5611 1.4597 23 6 3.3476 1.2631 0.6882 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.3664 1.4665 -2.0528 28 1 3.1200 1.3076 -1.8501 29 1 1.4681 3.6956 -1.1456 30 1 2.4610 3.4989 -2.6010 31 1 3.8650 4.7325 -1.1514 32 1 4.4304 3.0593 -0.9206 33 1 4.8686 4.7080 1.8584 34 1 4.2337 5.7775 0.5659 35 1 3.0406 6.6540 2.4678 36 1 2.9278 5.0394 3.2484 37 1 -0.4819 4.9492 1.9066 38 1 0.6098 4.3817 3.1930 39 1 0.2870 6.1219 3.0029 40 1 -1.2851 5.1898 -0.8880 41 1 4.7246 2.6026 1.6658 42 1 3.1171 2.5427 2.4075 43 1 3.3583 0.4267 1.3870 44 1 4.1244 1.1052 -0.0599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718735170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:16 Heat of formation + Delta-G solvation = -117.097961 kcal Electronic energy + Delta-G solvation = -23464.131627 eV Core-core repulsion = 20380.464631 eV Total energy + Delta-G solvation = -3083.666996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21248 -39.16934 -36.74070 -34.64134 -33.20661 -32.50836 -32.17591 -29.25660 -27.57378 -27.12259 -25.25529 -24.97523 -22.63058 -21.76240 -20.82720 -19.93308 -18.45669 -17.52817 -16.67019 -16.63155 -16.20717 -15.88016 -15.68248 -15.22648 -14.89825 -14.54516 -14.31272 -14.18991 -13.74512 -13.45216 -13.17913 -13.13504 -12.93720 -12.77033 -12.70560 -12.45486 -12.29254 -12.15777 -12.10362 -11.92608 -11.74445 -11.54229 -11.38636 -11.14104 -11.01734 -10.80195 -10.65050 -10.40391 -10.25862 -9.52548 -7.91875 -6.10866 1.40478 1.43373 1.47544 2.47524 2.93619 3.21842 3.59220 3.85362 3.92981 4.06707 4.21767 4.26789 4.43839 4.46841 4.52813 4.56522 4.58230 4.62559 4.75136 4.80571 4.83258 4.84975 4.98538 4.99901 5.03238 5.11125 5.15570 5.22246 5.24560 5.27283 5.34516 5.35408 5.43297 5.48132 5.50278 5.64351 5.75340 5.81477 6.04547 6.18240 6.41905 6.45855 6.85047 7.27047 7.63356 9.06729 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.008875 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.002815 B = 3154.322739 C = 3638.379828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.404 6.404 3 C 0.086 3.914 4 H 0.067 0.933 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.102 4.102 8 C 0.104 3.896 9 C -0.131 4.131 10 C -0.142 4.142 11 C 0.219 3.781 12 C -0.123 4.123 13 C -0.543 4.543 14 H 0.043 0.957 15 C 0.050 3.950 16 N -0.877 5.877 17 Si 0.924 3.076 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 O -0.358 6.358 22 C -0.109 4.109 23 C -0.105 4.105 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.105 0.895 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -6.769 1.656 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.324 6.324 3 C 0.029 3.971 4 H 0.085 0.915 5 C -0.150 4.150 6 C -0.163 4.163 7 C -0.139 4.139 8 C 0.063 3.937 9 C -0.168 4.168 10 C -0.180 4.180 11 C 0.181 3.819 12 C -0.180 4.180 13 C -0.581 4.581 14 H 0.061 0.939 15 C -0.152 4.152 16 N -0.514 5.514 17 Si 0.751 3.249 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.202 1.202 21 O -0.278 6.278 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.124 0.876 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.877 -7.155 1.521 10.040 hybrid contribution -0.735 1.471 -0.906 1.878 sum 6.142 -5.683 0.614 8.391 Atomic orbital electron populations 1.22786 0.80701 1.03054 0.99703 1.87763 1.20379 1.29079 1.95187 1.21978 0.96074 0.83391 0.95628 0.91529 1.20718 1.01027 0.96365 0.96893 1.20265 1.01606 0.95937 0.98487 1.21532 0.97366 1.00259 0.94792 1.21729 0.83997 0.93886 0.94042 1.23177 0.98111 0.97182 0.98372 1.23192 0.96609 1.00290 0.97870 1.19813 0.90533 0.82733 0.88785 1.21625 1.01437 0.97890 0.97089 1.21501 1.10952 1.06468 1.19144 0.93894 1.25363 0.95731 0.96168 0.97957 1.70056 1.14964 1.29112 1.37313 0.86186 0.77204 0.81074 0.80411 1.20415 1.21481 1.20212 1.88570 1.20205 1.39314 1.79756 1.22312 1.01535 0.92695 0.98079 1.21310 0.95240 0.97877 0.99824 0.94817 0.94993 0.87631 0.93979 0.91690 0.90066 0.94252 0.93348 0.90439 0.89453 0.92301 0.92106 0.91809 0.92375 0.95481 0.94259 0.93744 0.89281 0.92848 0.91105 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.79 113.37 1.22 2.26 16 2 O -0.40 -13.93 10.24 -148.98 -1.53 -15.46 16 3 C 0.09 3.08 2.27 30.19 0.07 3.15 16 4 H 0.07 2.86 5.42 -2.39 -0.01 2.85 16 5 C -0.11 -3.97 4.92 28.74 0.14 -3.83 16 6 C -0.13 -4.96 5.19 28.71 0.15 -4.81 16 7 C -0.10 -3.64 5.10 30.20 0.15 -3.48 16 8 C 0.10 3.78 0.73 -10.60 -0.01 3.78 16 9 C -0.13 -4.52 5.76 31.93 0.18 -4.33 16 10 C -0.14 -5.48 6.02 32.02 0.19 -5.29 16 11 C 0.22 10.20 0.73 -10.88 -0.01 10.19 16 12 C -0.12 -5.75 8.75 71.98 0.63 -5.12 16 13 C -0.54 -28.21 8.02 25.60 0.21 -28.00 16 14 H 0.04 2.25 7.72 -2.91 -0.02 2.23 16 15 C 0.05 2.67 5.28 84.66 0.45 3.12 16 16 N -0.88 -48.01 10.75 21.45 0.23 -47.78 16 17 Si 0.92 42.80 29.54 68.60 2.03 44.83 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 O -0.36 -16.18 5.26 -148.98 -0.78 -16.97 16 22 C -0.11 -3.32 4.87 31.37 0.15 -3.16 16 23 C -0.11 -3.17 5.07 30.15 0.15 -3.02 16 24 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 25 H 0.03 1.01 7.74 -2.39 -0.02 0.99 16 26 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.52 7.68 -2.38 -0.02 1.51 16 28 H 0.06 2.03 7.46 -2.39 -0.02 2.01 16 29 H 0.08 3.95 6.02 -2.39 -0.01 3.94 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.82 7.29 -2.39 -0.02 1.80 16 32 H 0.08 2.31 7.00 -2.38 -0.02 2.29 16 33 H 0.09 2.42 7.44 -2.39 -0.02 2.40 16 34 H 0.06 2.15 7.34 -2.39 -0.02 2.13 16 35 H 0.06 2.34 7.98 -2.39 -0.02 2.32 16 36 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 37 H 0.06 3.05 6.19 -2.39 -0.01 3.04 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 41 H 0.09 2.19 7.58 -2.39 -0.02 2.17 16 42 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 43 H 0.07 2.02 7.97 -2.39 -0.02 2.00 16 44 H 0.07 1.99 6.64 -2.39 -0.02 1.97 16 Total: -1.00 -56.93 323.23 4.58 -52.34 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.95 Total: 21.59 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 3.68 Total: -38.56 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.23 Total: -47.78 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -2.31 Total: -32.42 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -56.93 4.58 -52.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.755 kcal (2) G-P(sol) polarization free energy of solvation -56.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds