Wall clock time and date at job start Mon Mar 30 2020 07:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09000 * 109.62237 * 30.36438 * 3 2 1 5 5 C 1.54209 * 109.61969 * 269.99870 * 3 2 1 6 6 C 1.45583 * 112.43194 * 160.07155 * 5 3 2 7 7 C 1.54155 * 112.28755 * 61.92328 * 6 5 3 8 8 C 1.50576 * 108.66162 * 280.15740 * 7 6 5 9 9 C 1.54559 * 109.94732 * 214.68099 * 8 7 6 10 10 C 1.55256 * 102.32924 * 98.58224 * 9 8 7 11 11 C 1.54913 * 100.92905 * 34.29218 * 10 9 8 12 12 C 1.52998 * 110.39764 * 204.47071 * 11 10 9 13 13 C 1.50702 * 110.31086 * 82.34000 * 11 10 9 14 14 H 1.08004 * 119.99956 * 2.84218 * 13 11 10 15 15 C 1.37881 * 120.00052 * 182.83496 * 13 11 10 16 16 N 1.31508 * 119.99862 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99753 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46968 * 60.00958 * 17 15 13 19 19 H 1.48502 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47363 * 300.00657 * 17 15 13 21 21 O 1.43545 * 110.32722 * 332.88334 * 8 7 6 22 22 C 1.54152 * 112.60154 * 94.08812 * 8 7 6 23 23 C 1.50485 * 109.62005 * 150.91766 * 3 2 1 24 24 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.09001 * 108.89497 * 280.83090 * 5 3 2 28 28 H 1.08997 * 108.89128 * 39.31536 * 5 3 2 29 29 H 1.09004 * 108.91938 * 182.64286 * 6 5 3 30 30 H 1.09004 * 108.92055 * 301.29246 * 6 5 3 31 31 H 1.08996 * 109.60731 * 39.90662 * 7 6 5 32 32 H 1.09002 * 109.60463 * 160.40484 * 7 6 5 33 33 H 1.09000 * 110.83395 * 216.79535 * 9 8 7 34 34 H 1.08999 * 110.83460 * 340.37197 * 9 8 7 35 35 H 1.09004 * 111.12729 * 276.38030 * 10 9 8 36 36 H 1.09000 * 111.12811 * 152.20761 * 10 9 8 37 37 H 1.09001 * 109.47432 * 177.20794 * 12 11 10 38 38 H 1.08998 * 109.47254 * 297.21532 * 12 11 10 39 39 H 1.09002 * 109.46737 * 57.21586 * 12 11 10 40 40 H 0.97008 * 119.99805 * 179.97438 * 16 15 13 41 41 H 1.09003 * 108.81796 * 79.23137 * 22 8 7 42 42 H 1.09010 * 108.82101 * 197.62755 * 22 8 7 43 43 H 1.08997 * 108.89260 * 334.71094 * 23 3 2 44 44 H 1.09003 * 108.88974 * 93.19021 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3497 2.0001 0.5190 5 6 2.2208 1.7785 -1.4526 6 6 2.3622 3.2241 -1.5511 7 6 3.5920 3.7450 -0.7812 8 6 3.2449 3.8282 0.6817 9 6 3.9600 5.0379 1.3253 10 6 2.8435 6.1166 1.3344 11 6 1.5898 5.2398 1.5779 12 6 0.3382 5.9387 1.0434 13 6 1.4356 4.9442 3.0475 14 1 2.1252 5.3725 3.7598 15 6 0.4139 4.1270 3.4829 16 7 -0.4256 3.6051 2.6155 17 14 0.2223 3.7612 5.3046 18 1 0.0062 5.0307 6.0443 19 1 -0.9431 2.8639 5.5095 20 1 1.4517 3.0980 5.8084 21 8 1.8332 4.0273 0.8487 22 6 3.6522 2.5616 1.4602 23 6 3.3474 1.2633 0.6890 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1201 1.3081 -1.8501 28 1 1.3664 1.4659 -2.0529 29 1 2.4604 3.4989 -2.6013 30 1 1.4671 3.6953 -1.1450 31 1 4.4279 3.0595 -0.9202 32 1 3.8621 4.7346 -1.1499 33 1 4.2810 4.8035 2.3402 34 1 4.8042 5.3589 0.7150 35 1 2.7841 6.6288 0.3740 36 1 2.9901 6.8270 2.1481 37 1 -0.5263 5.2885 1.1774 38 1 0.1809 6.8694 1.5886 39 1 0.4683 6.1562 -0.0167 40 1 -1.1442 3.0299 2.9218 41 1 4.7215 2.6048 1.6673 42 1 3.1118 2.5416 2.4067 43 1 3.3581 0.4269 1.3877 44 1 4.1248 1.1061 -0.0587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718735177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:23 Heat of formation + Delta-G solvation = -104.802494 kcal Electronic energy + Delta-G solvation = -23504.724449 eV Core-core repulsion = 20421.590625 eV Total energy + Delta-G solvation = -3083.133824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70558 -37.62112 -35.22913 -32.71065 -31.79351 -31.04193 -30.40847 -27.64929 -26.13774 -25.12413 -24.03819 -23.30424 -21.06324 -20.12041 -19.39123 -18.29471 -16.66662 -16.01022 -15.23999 -14.79968 -14.63796 -14.40278 -14.11593 -13.66236 -13.36495 -12.86516 -12.82299 -12.66518 -12.10581 -12.05992 -11.67152 -11.34670 -11.24679 -11.15582 -10.83629 -10.75985 -10.67621 -10.64605 -10.38527 -10.32767 -10.22374 -10.07903 -9.80479 -9.76923 -9.49686 -9.17696 -8.98029 -8.77831 -8.43970 -7.79322 -5.93444 -4.07647 3.30734 3.36198 3.38993 4.38979 4.43099 4.96270 5.25847 5.30621 5.43565 5.54398 5.67575 5.69611 5.78968 5.87920 5.95033 5.95919 5.99981 6.12549 6.17310 6.20206 6.25213 6.27256 6.37352 6.52850 6.55417 6.62603 6.64263 6.73350 6.79986 6.83649 6.86638 6.90621 6.93715 7.00349 7.12219 7.14109 7.27755 7.54105 7.80511 7.91655 8.07086 8.38729 8.72780 9.05921 9.63036 11.08094 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.010108 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.551604 B = 2769.374861 C = 3587.223154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.399 6.399 3 C 0.078 3.922 4 H 0.114 0.886 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.115 3.885 9 C -0.136 4.136 10 C -0.146 4.146 11 C 0.231 3.769 12 C -0.128 4.128 13 C -0.535 4.535 14 H 0.053 0.947 15 C 0.086 3.914 16 N -0.860 5.860 17 Si 0.879 3.121 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 O -0.343 6.343 22 C -0.113 4.113 23 C -0.106 4.106 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.013 0.987 40 H 0.257 0.743 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -1.594 -6.016 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.318 6.318 3 C 0.021 3.979 4 H 0.132 0.868 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.152 4.152 8 C 0.074 3.926 9 C -0.173 4.173 10 C -0.184 4.184 11 C 0.194 3.806 12 C -0.186 4.186 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.119 4.119 16 N -0.496 5.496 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 O -0.263 6.263 22 C -0.151 4.151 23 C -0.143 4.143 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.726 -2.014 -6.111 7.984 hybrid contribution -0.038 0.079 1.143 1.146 sum 4.688 -1.936 -4.969 7.100 Atomic orbital electron populations 1.22663 0.81681 1.01054 1.00657 1.87768 1.19349 1.29512 1.95159 1.22177 0.96234 0.84416 0.95029 0.86805 1.20814 1.00759 0.96806 0.97675 1.20250 1.00946 0.95790 0.98365 1.21661 0.97687 1.00143 0.95664 1.21441 0.85437 0.93384 0.92352 1.23106 0.97513 0.96062 1.00667 1.23275 0.97521 0.97952 0.99606 1.19789 0.89282 0.80670 0.90851 1.21723 1.01901 0.99256 0.95722 1.21237 1.13437 1.31024 0.91549 0.92923 1.24878 0.95341 0.95138 0.96551 1.69938 1.15747 1.31064 1.32899 0.86891 0.77601 0.78180 0.86594 1.20436 1.21354 1.20355 1.88588 1.17654 1.44481 1.75531 1.22299 0.99524 0.93098 1.00155 1.21300 0.95723 0.98192 0.99134 0.94678 0.93167 0.91067 0.93355 0.93022 0.93763 0.89068 0.92334 0.92501 0.91248 0.92795 0.93295 0.91859 0.89505 0.94452 0.96796 0.93266 0.92986 0.90280 0.92127 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.78 101.05 1.09 1.70 16 2 O -0.40 -7.65 10.24 -35.23 -0.36 -8.01 16 3 C 0.08 1.50 2.26 -27.36 -0.06 1.44 16 4 H 0.11 2.60 5.39 -51.93 -0.28 2.32 16 5 C -0.12 -2.09 4.92 -29.60 -0.15 -2.24 16 6 C -0.12 -1.98 5.19 -29.63 -0.15 -2.13 16 7 C -0.11 -1.90 5.00 -27.34 -0.14 -2.04 16 8 C 0.11 2.19 0.74 -90.41 -0.07 2.12 16 9 C -0.14 -2.50 5.58 -24.72 -0.14 -2.64 16 10 C -0.15 -2.92 6.02 -24.53 -0.15 -3.07 16 11 C 0.23 5.38 0.73 -90.76 -0.07 5.31 16 12 C -0.13 -2.97 8.73 37.16 0.32 -2.65 16 13 C -0.53 -13.77 8.02 -34.44 -0.28 -14.05 16 14 H 0.05 1.37 7.72 -52.48 -0.41 0.97 16 15 C 0.09 2.25 5.28 -17.82 -0.09 2.16 16 16 N -0.86 -23.04 11.07 55.43 0.61 -22.43 16 17 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 O -0.34 -7.71 5.17 -35.23 -0.18 -7.89 16 22 C -0.11 -2.14 4.69 -25.58 -0.12 -2.26 16 23 C -0.11 -1.92 5.07 -27.44 -0.14 -2.05 16 24 H 0.03 0.56 7.74 -51.93 -0.40 0.16 16 25 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.77 7.47 -51.93 -0.39 0.38 16 28 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.81 6.31 -51.93 -0.33 1.49 16 31 H 0.06 0.90 6.99 -51.93 -0.36 0.54 16 32 H 0.06 0.90 7.59 -51.93 -0.39 0.50 16 33 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 34 H 0.05 0.86 7.63 -51.93 -0.40 0.46 16 35 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 36 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 37 H 0.09 2.22 6.21 -51.93 -0.32 1.90 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 41 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 42 H 0.08 1.75 8.12 -51.92 -0.42 1.33 16 43 H 0.06 1.10 7.97 -51.93 -0.41 0.69 16 44 H 0.05 0.84 6.64 -51.93 -0.35 0.49 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -26.53 324.55 -7.94 -34.47 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.75 Total: 3.69 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -0.13 Total: -20.39 kcal Atomic # 7 Polarization: -23.04 SS G_CDS: 0.61 Total: -22.43 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.54 Total: -15.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.53 -7.94 -34.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.332 kcal (2) G-P(sol) polarization free energy of solvation -26.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds