Wall clock time and date at job start Mon Mar 30 2020 07:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09000 * 109.62237 * 30.36438 * 3 2 1 5 5 C 1.54209 * 109.61969 * 269.99870 * 3 2 1 6 6 C 1.45583 * 112.43194 * 160.07155 * 5 3 2 7 7 C 1.54155 * 112.28755 * 61.92328 * 6 5 3 8 8 C 1.50576 * 108.66162 * 280.15740 * 7 6 5 9 9 C 1.54559 * 109.94732 * 214.68099 * 8 7 6 10 10 C 1.55256 * 102.32924 * 98.58224 * 9 8 7 11 11 C 1.54913 * 100.92905 * 34.29218 * 10 9 8 12 12 C 1.52998 * 110.39764 * 204.47071 * 11 10 9 13 13 C 1.50702 * 110.31086 * 82.34000 * 11 10 9 14 14 H 1.08004 * 119.99956 * 2.84218 * 13 11 10 15 15 C 1.37881 * 120.00052 * 182.83496 * 13 11 10 16 16 N 1.31508 * 119.99862 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99753 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46968 * 60.00958 * 17 15 13 19 19 H 1.48502 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47363 * 300.00657 * 17 15 13 21 21 O 1.43545 * 110.32722 * 332.88334 * 8 7 6 22 22 C 1.54152 * 112.60154 * 94.08812 * 8 7 6 23 23 C 1.50485 * 109.62005 * 150.91766 * 3 2 1 24 24 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.09001 * 108.89497 * 280.83090 * 5 3 2 28 28 H 1.08997 * 108.89128 * 39.31536 * 5 3 2 29 29 H 1.09004 * 108.91938 * 182.64286 * 6 5 3 30 30 H 1.09004 * 108.92055 * 301.29246 * 6 5 3 31 31 H 1.08996 * 109.60731 * 39.90662 * 7 6 5 32 32 H 1.09002 * 109.60463 * 160.40484 * 7 6 5 33 33 H 1.09000 * 110.83395 * 216.79535 * 9 8 7 34 34 H 1.08999 * 110.83460 * 340.37197 * 9 8 7 35 35 H 1.09004 * 111.12729 * 276.38030 * 10 9 8 36 36 H 1.09000 * 111.12811 * 152.20761 * 10 9 8 37 37 H 1.09001 * 109.47432 * 177.20794 * 12 11 10 38 38 H 1.08998 * 109.47254 * 297.21532 * 12 11 10 39 39 H 1.09002 * 109.46737 * 57.21586 * 12 11 10 40 40 H 0.97008 * 119.99805 * 179.97438 * 16 15 13 41 41 H 1.09003 * 108.81796 * 79.23137 * 22 8 7 42 42 H 1.09010 * 108.82101 * 197.62755 * 22 8 7 43 43 H 1.08997 * 108.89260 * 334.71094 * 23 3 2 44 44 H 1.09003 * 108.88974 * 93.19021 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3497 2.0001 0.5190 5 6 2.2208 1.7785 -1.4526 6 6 2.3622 3.2241 -1.5511 7 6 3.5920 3.7450 -0.7812 8 6 3.2449 3.8282 0.6817 9 6 3.9600 5.0379 1.3253 10 6 2.8435 6.1166 1.3344 11 6 1.5898 5.2398 1.5779 12 6 0.3382 5.9387 1.0434 13 6 1.4356 4.9442 3.0475 14 1 2.1252 5.3725 3.7598 15 6 0.4139 4.1270 3.4829 16 7 -0.4256 3.6051 2.6155 17 14 0.2223 3.7612 5.3046 18 1 0.0062 5.0307 6.0443 19 1 -0.9431 2.8639 5.5095 20 1 1.4517 3.0980 5.8084 21 8 1.8332 4.0273 0.8487 22 6 3.6522 2.5616 1.4602 23 6 3.3474 1.2633 0.6890 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1201 1.3081 -1.8501 28 1 1.3664 1.4659 -2.0529 29 1 2.4604 3.4989 -2.6013 30 1 1.4671 3.6953 -1.1450 31 1 4.4279 3.0595 -0.9202 32 1 3.8621 4.7346 -1.1499 33 1 4.2810 4.8035 2.3402 34 1 4.8042 5.3589 0.7150 35 1 2.7841 6.6288 0.3740 36 1 2.9901 6.8270 2.1481 37 1 -0.5263 5.2885 1.1774 38 1 0.1809 6.8694 1.5886 39 1 0.4683 6.1562 -0.0167 40 1 -1.1442 3.0299 2.9218 41 1 4.7215 2.6048 1.6673 42 1 3.1118 2.5416 2.4067 43 1 3.3581 0.4269 1.3877 44 1 4.1248 1.1061 -0.0587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718735177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:23 Heat of formation + Delta-G solvation = -118.156953 kcal Electronic energy + Delta-G solvation = -23505.303542 eV Core-core repulsion = 20421.590625 eV Total energy + Delta-G solvation = -3083.712917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21850 -39.14917 -36.76035 -34.53800 -33.28972 -32.61898 -32.08373 -29.24861 -27.55683 -27.10048 -25.50735 -24.80983 -22.57712 -21.67538 -20.99724 -19.84291 -18.46822 -17.52200 -16.72243 -16.57809 -16.24086 -15.94758 -15.62213 -15.33047 -14.87631 -14.41588 -14.31955 -14.22925 -13.63371 -13.53151 -13.17790 -13.16361 -13.01884 -12.74973 -12.63738 -12.43389 -12.25821 -12.24751 -12.00359 -11.92813 -11.86664 -11.61335 -11.31214 -11.23465 -11.01870 -10.78722 -10.61917 -10.44798 -10.24051 -9.52166 -7.93605 -6.12092 1.38849 1.41479 1.45831 2.45914 2.96112 3.21466 3.58871 3.87493 3.93700 4.06179 4.24681 4.26377 4.41416 4.47957 4.54375 4.55394 4.58157 4.64749 4.69752 4.79491 4.84349 4.84648 5.01799 5.02003 5.03188 5.13557 5.15710 5.22131 5.25625 5.26612 5.32343 5.37642 5.40937 5.47231 5.53154 5.59887 5.73632 5.80454 5.94916 6.18460 6.43351 6.44751 6.84267 7.27030 7.62047 9.05097 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.010108 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.551604 B = 2769.374861 C = 3587.223154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.409 6.409 3 C 0.078 3.922 4 H 0.072 0.928 5 C -0.116 4.116 6 C -0.112 4.112 7 C -0.109 4.109 8 C 0.105 3.895 9 C -0.131 4.131 10 C -0.141 4.141 11 C 0.218 3.782 12 C -0.121 4.121 13 C -0.543 4.543 14 H 0.043 0.957 15 C 0.046 3.954 16 N -0.878 5.878 17 Si 0.925 3.075 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.280 1.280 21 O -0.357 6.357 22 C -0.109 4.109 23 C -0.103 4.103 24 H 0.041 0.959 25 H 0.022 0.978 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -1.662 -7.536 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.329 6.329 3 C 0.021 3.979 4 H 0.090 0.910 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.146 4.146 8 C 0.065 3.935 9 C -0.168 4.168 10 C -0.179 4.179 11 C 0.181 3.819 12 C -0.179 4.179 13 C -0.581 4.581 14 H 0.061 0.939 15 C -0.156 4.156 16 N -0.516 5.516 17 Si 0.752 3.248 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.206 1.206 21 O -0.277 6.277 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.653 -2.075 -7.625 10.330 hybrid contribution -0.655 0.090 1.625 1.755 sum 5.998 -1.984 -5.999 8.713 Atomic orbital electron populations 1.22726 0.80775 1.02718 0.99620 1.87739 1.20340 1.29549 1.95250 1.22116 0.95824 0.83597 0.96382 0.90962 1.20752 1.01717 0.97028 0.95900 1.20186 0.99729 0.95337 0.99689 1.21648 0.98013 1.01639 0.93312 1.21724 0.83994 0.93498 0.94300 1.23107 0.97964 0.95069 1.00675 1.23189 0.96445 0.97912 1.00327 1.19805 0.90711 0.81865 0.89561 1.21611 1.00974 0.98573 0.96764 1.21519 1.12858 1.30477 0.93218 0.93914 1.25411 0.95534 0.95461 0.99239 1.70063 1.16056 1.31591 1.33844 0.86165 0.77150 0.77956 0.83493 1.19948 1.21501 1.20570 1.88598 1.19946 1.44041 1.75115 1.22241 1.00313 0.93849 0.98252 1.21288 0.95926 0.97364 0.99453 0.94015 0.95922 0.88031 0.91260 0.93016 0.91217 0.92480 0.90128 0.90967 0.92496 0.89343 0.91605 0.92145 0.92513 0.94376 0.95200 0.93830 0.90504 0.94699 0.92960 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.78 113.37 1.22 2.51 16 2 O -0.41 -15.49 10.24 -148.98 -1.53 -17.01 16 3 C 0.08 2.94 2.26 30.19 0.07 3.01 16 4 H 0.07 3.40 5.39 -2.39 -0.01 3.39 16 5 C -0.12 -3.70 4.92 28.74 0.14 -3.56 16 6 C -0.11 -3.54 5.19 28.72 0.15 -3.39 16 7 C -0.11 -3.23 5.00 30.20 0.15 -3.08 16 8 C 0.10 3.83 0.74 -10.66 -0.01 3.83 16 9 C -0.13 -4.51 5.58 31.90 0.18 -4.33 16 10 C -0.14 -5.44 6.02 32.02 0.19 -5.24 16 11 C 0.22 10.20 0.73 -10.89 -0.01 10.19 16 12 C -0.12 -5.69 8.73 71.98 0.63 -5.06 16 13 C -0.54 -28.55 8.02 25.60 0.21 -28.34 16 14 H 0.04 2.27 7.72 -2.91 -0.02 2.25 16 15 C 0.05 2.48 5.28 84.66 0.45 2.93 16 16 N -0.88 -48.93 11.07 21.45 0.24 -48.70 16 17 Si 0.92 43.53 29.54 68.60 2.03 45.55 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 21 O -0.36 -16.15 5.17 -148.98 -0.77 -16.92 16 22 C -0.11 -4.01 4.69 31.34 0.15 -3.86 16 23 C -0.10 -3.58 5.07 30.14 0.15 -3.42 16 24 H 0.04 1.34 7.74 -2.39 -0.02 1.32 16 25 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 26 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 27 H 0.07 1.93 7.47 -2.39 -0.02 1.92 16 28 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.23 6.31 -2.39 -0.02 2.21 16 31 H 0.08 2.07 6.99 -2.39 -0.02 2.05 16 32 H 0.07 1.95 7.59 -2.39 -0.02 1.93 16 33 H 0.06 2.09 7.75 -2.39 -0.02 2.07 16 34 H 0.09 2.44 7.63 -2.39 -0.02 2.43 16 35 H 0.07 2.29 8.06 -2.38 -0.02 2.27 16 36 H 0.06 2.33 7.98 -2.39 -0.02 2.31 16 37 H 0.06 2.99 6.21 -2.39 -0.01 2.97 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 41 H 0.08 2.40 7.97 -2.39 -0.02 2.38 16 42 H 0.03 1.57 8.12 -2.38 -0.02 1.55 16 43 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 44 H 0.08 2.30 6.64 -2.39 -0.02 2.28 16 Total: -1.00 -58.53 324.55 4.58 -53.94 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.95 Total: 20.95 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 3.67 Total: -37.82 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.24 Total: -48.70 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -2.30 Total: -33.93 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -58.53 4.58 -53.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.215 kcal (2) G-P(sol) polarization free energy of solvation -58.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds