Wall clock time and date at job start Mon Mar 30 2020 07:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99848 * 2 1 4 4 H 1.08995 * 108.78780 * 28.54658 * 3 2 1 5 5 C 1.54218 * 108.89037 * 269.99962 * 3 2 1 6 6 C 1.50482 * 108.56784 * 159.07751 * 5 3 2 7 7 C 1.54053 * 112.44131 * 94.21161 * 6 5 3 8 8 C 1.54155 * 112.78924 * 318.33777 * 7 6 5 9 9 C 1.54552 * 108.11550 * 196.70274 * 8 7 6 10 10 C 1.55270 * 102.32431 * 221.81980 * 9 8 7 11 11 C 1.54926 * 100.92279 * 34.30341 * 10 9 8 12 12 C 1.52993 * 110.31028 * 82.44735 * 11 10 9 13 13 C 1.50701 * 110.30816 * 204.52454 * 11 10 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27768 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 O 1.43539 * 108.36033 * 80.65801 * 8 7 6 22 22 C 1.50588 * 112.58870 * 318.37127 * 8 7 6 23 23 C 1.45582 * 108.88938 * 147.09367 * 3 2 1 24 24 H 1.08995 * 109.47581 * 59.99372 * 1 2 3 25 25 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46697 * 299.99841 * 1 2 3 27 27 H 1.09000 * 109.62025 * 39.35635 * 5 3 2 28 28 H 1.08990 * 109.62340 * 278.80437 * 5 3 2 29 29 H 1.09004 * 108.88968 * 333.44269 * 6 5 3 30 30 H 1.09007 * 108.81129 * 214.91729 * 6 5 3 31 31 H 1.08996 * 108.81878 * 197.48607 * 7 6 5 32 32 H 1.08991 * 108.82073 * 79.19150 * 7 6 5 33 33 H 1.08999 * 110.83623 * 103.60819 * 9 8 7 34 34 H 1.09000 * 110.83600 * 340.02424 * 9 8 7 35 35 H 1.08997 * 111.12989 * 276.38722 * 10 9 8 36 36 H 1.09003 * 111.16187 * 152.23068 * 10 9 8 37 37 H 1.09004 * 109.46921 * 181.38698 * 12 11 10 38 38 H 1.09003 * 109.47805 * 301.39358 * 12 11 10 39 39 H 1.09003 * 109.46898 * 61.39413 * 12 11 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.60625 * 213.84448 * 22 8 7 42 42 H 1.09001 * 109.60624 * 334.34350 * 22 8 7 43 43 H 1.09003 * 108.91668 * 303.41595 * 23 3 2 44 44 H 1.08997 * 108.91454 * 61.95648 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3249 1.9948 0.4931 5 6 2.2133 1.7616 -1.4591 6 6 2.3238 3.2622 -1.4811 7 6 3.7857 3.7450 -1.4294 8 6 4.6453 2.9408 -0.4340 9 6 5.9312 3.7489 -0.1474 10 6 7.0247 2.6466 -0.1587 11 6 6.4668 1.6908 -1.2428 12 6 6.8403 2.1947 -2.6383 13 6 6.9960 0.2955 -1.0324 14 1 7.6666 0.0905 -0.2110 15 6 6.6289 -0.7179 -1.8921 16 7 5.8126 -0.4682 -2.8926 17 14 7.2910 -2.4457 -1.6359 18 1 6.8762 -2.9416 -0.2990 19 1 6.7490 -3.3444 -2.6867 20 1 8.7735 -2.4251 -1.7182 21 8 5.0423 1.7152 -1.0669 22 6 3.9213 2.6531 0.8546 23 6 3.2584 1.2657 0.7483 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3612 1.4484 -2.0624 28 1 3.1278 1.3214 -1.8563 29 1 1.7874 3.6681 -0.6233 30 1 1.8611 3.6353 -2.3949 31 1 3.7991 4.7950 -1.1371 32 1 4.2216 3.6537 -2.4241 33 1 5.8767 4.2309 0.8287 34 1 6.1117 4.4820 -0.9335 35 1 7.0903 2.1482 0.8084 36 1 7.9915 3.0544 -0.4543 37 1 6.4206 1.5265 -3.3903 38 1 6.4410 3.1989 -2.7810 39 1 7.9255 2.2177 -2.7378 40 1 5.5546 -1.1811 -3.4976 41 1 4.6312 2.6569 1.6818 42 1 3.1568 3.4118 1.0219 43 1 3.0566 0.8926 1.7524 44 1 3.9468 0.5823 0.2511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718735179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:26 Heat of formation + Delta-G solvation = -101.628140 kcal Electronic energy + Delta-G solvation = -23242.964940 eV Core-core repulsion = 20159.968766 eV Total energy + Delta-G solvation = -3082.996174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80253 -37.87778 -35.22787 -32.72044 -31.67710 -31.13601 -30.34287 -27.46749 -26.44243 -25.26771 -23.93111 -23.62410 -21.17358 -20.16776 -19.28325 -18.20970 -16.49965 -16.37035 -15.49265 -14.91398 -14.64039 -14.45818 -14.01597 -13.90599 -13.34414 -13.10528 -12.66697 -12.27942 -12.20884 -12.03854 -11.80202 -11.73818 -11.37944 -11.03900 -10.92224 -10.82482 -10.66095 -10.52259 -10.42946 -10.26512 -10.18412 -10.08911 -9.94868 -9.62622 -9.45825 -9.25599 -8.99383 -8.88416 -8.38666 -7.79959 -5.88758 -4.04049 3.37397 3.42584 3.45105 4.19464 4.48878 4.93766 5.20197 5.29471 5.41566 5.49231 5.53045 5.59496 5.60534 5.68949 5.75946 5.79752 5.85353 5.89999 6.01067 6.08985 6.14391 6.21955 6.29736 6.37800 6.49476 6.55445 6.62093 6.68881 6.74239 6.78793 6.85228 6.87712 6.96662 7.09183 7.20679 7.30188 7.34618 7.48372 7.78842 7.84831 8.21808 8.46657 8.76356 9.14176 9.66331 11.12630 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.009234 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.593111 B = 3031.456602 C = 4042.536681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.113 3.887 4 H 0.036 0.964 5 C -0.147 4.147 6 C -0.105 4.105 7 C -0.118 4.118 8 C 0.101 3.899 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.231 3.769 12 C -0.147 4.147 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.084 3.916 16 N -0.858 5.858 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.279 1.279 21 O -0.331 6.331 22 C -0.101 4.101 23 C -0.127 4.127 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.009 0.991 39 H 0.030 0.970 40 H 0.259 0.741 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 7.193 4.372 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.056 3.944 4 H 0.054 0.946 5 C -0.185 4.185 6 C -0.143 4.143 7 C -0.156 4.156 8 C 0.061 3.939 9 C -0.186 4.186 10 C -0.180 4.180 11 C 0.194 3.806 12 C -0.205 4.205 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.122 4.122 16 N -0.494 5.494 17 Si 0.713 3.287 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 O -0.251 6.251 22 C -0.138 4.138 23 C -0.164 4.164 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.028 0.972 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.215 6.789 4.139 10.737 hybrid contribution 0.181 -0.421 0.178 0.492 sum -7.034 6.368 4.317 10.424 Atomic orbital electron populations 1.22673 0.82618 1.01865 0.99171 1.88018 1.18270 1.29047 1.95070 1.20968 0.94573 0.83017 0.95847 0.94650 1.21966 1.04676 0.95568 0.96265 1.21158 0.96581 0.96314 1.00225 1.22401 0.94991 0.97589 1.00595 1.21606 0.93081 0.87561 0.91689 1.23264 0.96511 0.98398 1.00396 1.23283 0.97175 0.96319 1.01181 1.19816 0.78111 0.93255 0.89388 1.22138 0.98576 0.97809 1.01982 1.20932 1.28764 0.93020 1.13272 0.92397 1.24949 0.94071 0.98443 0.94700 1.69902 1.32346 1.32199 1.14994 0.86785 0.78996 0.84858 0.78024 1.20172 1.21319 1.20444 1.88867 1.24881 1.32985 1.78360 1.21442 0.98739 0.96346 0.97308 1.20385 0.97319 0.99305 0.99377 0.94545 0.90369 0.94902 0.93217 0.86491 0.93477 0.93104 0.93196 0.91484 0.92255 0.91925 0.91973 0.92373 0.88971 0.97166 0.95084 0.93067 0.91848 0.92704 0.93350 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.75 101.05 1.09 1.55 16 2 O -0.39 -7.20 10.24 -35.23 -0.36 -7.56 16 3 C 0.11 2.01 2.11 -29.59 -0.06 1.94 16 4 H 0.04 0.56 7.05 -51.93 -0.37 0.19 16 5 C -0.15 -2.71 5.22 -27.35 -0.14 -2.86 16 6 C -0.11 -1.68 5.32 -27.44 -0.15 -1.82 16 7 C -0.12 -2.01 4.69 -25.58 -0.12 -2.13 16 8 C 0.10 1.90 0.74 -90.41 -0.07 1.84 16 9 C -0.15 -2.62 5.42 -24.71 -0.13 -2.75 16 10 C -0.14 -2.91 6.01 -24.51 -0.15 -3.06 16 11 C 0.23 5.58 0.72 -90.76 -0.07 5.51 16 12 C -0.15 -3.52 8.61 37.15 0.32 -3.20 16 13 C -0.52 -14.12 8.30 -34.44 -0.29 -14.41 16 14 H 0.06 1.56 7.76 -52.49 -0.41 1.15 16 15 C 0.08 2.29 5.28 -17.82 -0.09 2.20 16 16 N -0.86 -24.09 10.98 55.43 0.61 -23.48 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 O -0.33 -7.73 5.34 -35.23 -0.19 -7.91 16 22 C -0.10 -1.73 5.00 -27.35 -0.14 -1.86 16 23 C -0.13 -2.40 4.74 -29.64 -0.14 -2.55 16 24 H 0.04 0.47 7.72 -51.93 -0.40 0.07 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 28 H 0.12 2.68 5.71 -51.93 -0.30 2.39 16 29 H 0.05 0.67 6.64 -51.93 -0.35 0.33 16 30 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 31 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 32 H 0.07 1.26 7.72 -51.93 -0.40 0.86 16 33 H 0.06 0.92 7.64 -51.93 -0.40 0.52 16 34 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 35 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 36 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 37 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 38 H 0.01 0.21 7.08 -51.93 -0.37 -0.16 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.05 7.59 -51.93 -0.39 0.66 16 42 H 0.05 0.82 6.99 -51.93 -0.36 0.46 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.11 2.66 6.32 -51.93 -0.33 2.33 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -28.23 322.54 -7.89 -36.11 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.65 Total: 3.23 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -0.14 Total: -21.59 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.61 Total: -23.48 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.55 Total: -15.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.23 -7.89 -36.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.515 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds