Wall clock time and date at job start Mon Mar 30 2020 07:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99848 * 2 1 4 4 H 1.08995 * 108.78780 * 28.54658 * 3 2 1 5 5 C 1.54218 * 108.89037 * 269.99962 * 3 2 1 6 6 C 1.50482 * 108.56784 * 159.07751 * 5 3 2 7 7 C 1.54053 * 112.44131 * 94.21161 * 6 5 3 8 8 C 1.54155 * 112.78924 * 318.33777 * 7 6 5 9 9 C 1.54552 * 108.11550 * 196.70274 * 8 7 6 10 10 C 1.55270 * 102.32431 * 221.81980 * 9 8 7 11 11 C 1.54926 * 100.92279 * 34.30341 * 10 9 8 12 12 C 1.52993 * 110.31028 * 82.44735 * 11 10 9 13 13 C 1.50701 * 110.30816 * 204.52454 * 11 10 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27768 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 O 1.43539 * 108.36033 * 80.65801 * 8 7 6 22 22 C 1.50588 * 112.58870 * 318.37127 * 8 7 6 23 23 C 1.45582 * 108.88938 * 147.09367 * 3 2 1 24 24 H 1.08995 * 109.47581 * 59.99372 * 1 2 3 25 25 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46697 * 299.99841 * 1 2 3 27 27 H 1.09000 * 109.62025 * 39.35635 * 5 3 2 28 28 H 1.08990 * 109.62340 * 278.80437 * 5 3 2 29 29 H 1.09004 * 108.88968 * 333.44269 * 6 5 3 30 30 H 1.09007 * 108.81129 * 214.91729 * 6 5 3 31 31 H 1.08996 * 108.81878 * 197.48607 * 7 6 5 32 32 H 1.08991 * 108.82073 * 79.19150 * 7 6 5 33 33 H 1.08999 * 110.83623 * 103.60819 * 9 8 7 34 34 H 1.09000 * 110.83600 * 340.02424 * 9 8 7 35 35 H 1.08997 * 111.12989 * 276.38722 * 10 9 8 36 36 H 1.09003 * 111.16187 * 152.23068 * 10 9 8 37 37 H 1.09004 * 109.46921 * 181.38698 * 12 11 10 38 38 H 1.09003 * 109.47805 * 301.39358 * 12 11 10 39 39 H 1.09003 * 109.46898 * 61.39413 * 12 11 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.60625 * 213.84448 * 22 8 7 42 42 H 1.09001 * 109.60624 * 334.34350 * 22 8 7 43 43 H 1.09003 * 108.91668 * 303.41595 * 23 3 2 44 44 H 1.08997 * 108.91454 * 61.95648 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3249 1.9948 0.4931 5 6 2.2133 1.7616 -1.4591 6 6 2.3238 3.2622 -1.4811 7 6 3.7857 3.7450 -1.4294 8 6 4.6453 2.9408 -0.4340 9 6 5.9312 3.7489 -0.1474 10 6 7.0247 2.6466 -0.1587 11 6 6.4668 1.6908 -1.2428 12 6 6.8403 2.1947 -2.6383 13 6 6.9960 0.2955 -1.0324 14 1 7.6666 0.0905 -0.2110 15 6 6.6289 -0.7179 -1.8921 16 7 5.8126 -0.4682 -2.8926 17 14 7.2910 -2.4457 -1.6359 18 1 6.8762 -2.9416 -0.2990 19 1 6.7490 -3.3444 -2.6867 20 1 8.7735 -2.4251 -1.7182 21 8 5.0423 1.7152 -1.0669 22 6 3.9213 2.6531 0.8546 23 6 3.2584 1.2657 0.7483 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3612 1.4484 -2.0624 28 1 3.1278 1.3214 -1.8563 29 1 1.7874 3.6681 -0.6233 30 1 1.8611 3.6353 -2.3949 31 1 3.7991 4.7950 -1.1371 32 1 4.2216 3.6537 -2.4241 33 1 5.8767 4.2309 0.8287 34 1 6.1117 4.4820 -0.9335 35 1 7.0903 2.1482 0.8084 36 1 7.9915 3.0544 -0.4543 37 1 6.4206 1.5265 -3.3903 38 1 6.4410 3.1989 -2.7810 39 1 7.9255 2.2177 -2.7378 40 1 5.5546 -1.1811 -3.4976 41 1 4.6312 2.6569 1.6818 42 1 3.1568 3.4118 1.0219 43 1 3.0566 0.8926 1.7524 44 1 3.9468 0.5823 0.2511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718735179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:26 Heat of formation + Delta-G solvation = -117.212108 kcal Electronic energy + Delta-G solvation = -23243.640711 eV Core-core repulsion = 20159.968766 eV Total energy + Delta-G solvation = -3083.671946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28833 -39.32296 -36.72528 -34.61256 -33.05482 -32.73716 -32.03823 -29.09508 -27.67416 -27.22887 -25.38177 -25.10262 -22.65743 -21.70664 -20.89396 -19.70417 -18.37659 -17.74378 -17.00323 -16.50589 -16.23400 -16.00341 -15.58656 -15.34497 -14.72479 -14.70485 -14.03010 -13.92999 -13.87047 -13.58132 -13.27189 -13.20136 -12.93041 -12.77140 -12.60429 -12.44933 -12.34044 -12.17033 -12.03884 -11.96965 -11.71420 -11.56069 -11.46122 -11.12837 -11.00645 -10.78610 -10.70766 -10.41966 -10.31051 -9.52236 -7.96386 -6.17078 1.40618 1.43231 1.48669 2.46291 2.96360 3.16099 3.65825 3.85008 3.92497 4.09148 4.19592 4.26131 4.30506 4.44696 4.51631 4.53891 4.57608 4.62723 4.64529 4.69937 4.76773 4.84025 4.89883 5.00791 5.02559 5.04885 5.13815 5.17800 5.21472 5.23435 5.34127 5.39154 5.43917 5.46337 5.57407 5.67265 5.70277 5.80757 5.92288 6.25334 6.45699 6.51816 6.78632 7.34902 7.57709 9.02553 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.009234 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.593111 B = 3031.456602 C = 4042.536681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.114 3.886 4 H 0.068 0.932 5 C -0.143 4.143 6 C -0.101 4.101 7 C -0.115 4.115 8 C 0.088 3.912 9 C -0.137 4.137 10 C -0.139 4.139 11 C 0.218 3.782 12 C -0.137 4.137 13 C -0.540 4.540 14 H 0.049 0.951 15 C 0.039 3.961 16 N -0.881 5.881 17 Si 0.937 3.063 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.270 1.270 21 O -0.353 6.353 22 C -0.096 4.096 23 C -0.120 4.120 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.254 0.746 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 9.249 5.845 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C 0.057 3.943 4 H 0.086 0.914 5 C -0.180 4.180 6 C -0.139 4.139 7 C -0.153 4.153 8 C 0.048 3.952 9 C -0.175 4.175 10 C -0.177 4.177 11 C 0.180 3.820 12 C -0.195 4.195 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.163 4.163 16 N -0.518 5.518 17 Si 0.764 3.236 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.195 1.195 21 O -0.273 6.273 22 C -0.133 4.133 23 C -0.158 4.158 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.492 8.849 5.616 13.489 hybrid contribution 0.543 -1.085 -0.265 1.241 sum -7.948 7.765 5.351 12.333 Atomic orbital electron populations 1.22911 0.80212 1.03230 1.00598 1.87979 1.21099 1.29915 1.95251 1.20967 0.94599 0.83452 0.95274 0.91415 1.21847 1.02088 0.97368 0.96738 1.21138 0.96304 0.94250 1.02192 1.22360 0.95124 0.99110 0.98681 1.21953 0.94190 0.86451 0.92641 1.23249 0.94296 0.97444 1.02473 1.23173 0.98481 0.96627 0.99439 1.19810 0.79218 0.92584 0.90368 1.21982 0.98172 0.97948 1.01366 1.21316 1.28677 0.95091 1.12725 0.93269 1.25577 0.94513 1.01503 0.94727 1.70053 1.33502 1.32591 1.15672 0.85966 0.78851 0.81295 0.77524 1.20455 1.21246 1.19469 1.88859 1.23798 1.35592 1.79073 1.21457 0.99433 0.95920 0.96500 1.20296 0.96873 0.99440 0.99165 0.93728 0.89260 0.92672 0.93018 0.91654 0.90596 0.91826 0.89904 0.94123 0.89172 0.90968 0.92709 0.91646 0.92201 0.95363 0.95255 0.93640 0.91391 0.89311 0.92698 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.75 113.37 1.22 1.90 16 2 O -0.42 -15.59 10.24 -148.98 -1.53 -17.12 16 3 C 0.11 3.88 2.11 28.74 0.06 3.94 16 4 H 0.07 1.87 7.05 -2.39 -0.02 1.85 16 5 C -0.14 -5.17 5.22 30.19 0.16 -5.01 16 6 C -0.10 -2.94 5.32 30.14 0.16 -2.78 16 7 C -0.12 -3.63 4.69 31.34 0.15 -3.49 16 8 C 0.09 3.14 0.74 -10.66 -0.01 3.13 16 9 C -0.14 -4.47 5.42 31.90 0.17 -4.29 16 10 C -0.14 -5.61 6.01 32.03 0.19 -5.41 16 11 C 0.22 10.70 0.72 -10.88 -0.01 10.69 16 12 C -0.14 -6.68 8.61 71.98 0.62 -6.06 16 13 C -0.54 -30.18 8.30 25.60 0.21 -29.97 16 14 H 0.05 2.73 7.76 -2.91 -0.02 2.71 16 15 C 0.04 2.23 5.28 84.65 0.45 2.68 16 16 N -0.88 -51.79 10.98 21.45 0.24 -51.56 16 17 Si 0.94 45.22 29.54 68.60 2.03 47.25 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 O -0.35 -16.81 5.34 -148.98 -0.79 -17.60 16 22 C -0.10 -3.02 5.00 30.19 0.15 -2.87 16 23 C -0.12 -4.49 4.74 28.71 0.14 -4.35 16 24 H 0.04 1.05 7.72 -2.39 -0.02 1.04 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 27 H 0.05 1.79 7.66 -2.39 -0.02 1.77 16 28 H 0.06 3.11 5.71 -2.39 -0.01 3.10 16 29 H 0.08 1.79 6.64 -2.39 -0.02 1.77 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.08 2.07 7.97 -2.39 -0.02 2.06 16 32 H 0.04 1.49 7.72 -2.39 -0.02 1.47 16 33 H 0.09 2.40 7.64 -2.39 -0.02 2.38 16 34 H 0.07 2.22 7.39 -2.39 -0.02 2.20 16 35 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 36 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 37 H 0.06 3.31 5.95 -2.39 -0.01 3.30 16 38 H 0.03 1.21 7.08 -2.39 -0.02 1.20 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.07 2.07 7.59 -2.39 -0.02 2.05 16 42 H 0.09 2.22 6.99 -2.39 -0.02 2.20 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 2.80 6.32 -2.39 -0.02 2.79 16 Total: -1.00 -64.62 322.54 4.56 -60.06 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.96 Total: 20.86 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 3.66 Total: -41.89 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.24 Total: -51.56 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -2.32 Total: -34.72 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.62 4.56 -60.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718735179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.152 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds