Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 C 1.53004 * 109.47031 * 119.99902 * 2 1 3 5 5 N 1.46903 * 109.47114 * 177.03968 * 4 2 1 6 6 C 1.46905 * 110.99886 * 287.89934 * 5 4 2 7 7 C 1.50698 * 109.46813 * 160.45300 * 6 5 4 8 8 H 1.08000 * 120.00057 * 4.69522 * 7 6 5 9 9 C 1.37878 * 119.99775 * 184.70636 * 7 6 5 10 10 N 1.31514 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00100 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47476 * 59.99238 * 11 9 7 13 13 H 1.48497 * 109.47306 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47026 * 299.99535 * 11 9 7 15 15 C 1.46899 * 110.99862 * 163.94595 * 5 4 2 16 16 C 1.53008 * 109.47051 * 293.94912 * 15 5 4 17 17 C 1.50699 * 109.46996 * 180.02562 * 16 15 5 18 18 C 1.35131 * 127.24992 * 90.00516 * 17 16 15 19 19 C 1.37804 * 114.76441 * 180.22276 * 18 17 16 20 20 N 1.30084 * 116.87664 * 359.51772 * 19 18 17 21 21 S 1.69602 * 107.15303 * 0.44348 * 20 19 18 22 22 H 1.09002 * 109.47307 * 300.00091 * 1 2 3 23 23 H 1.09006 * 109.46907 * 60.00165 * 1 2 3 24 24 H 1.08997 * 109.47610 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47307 * 239.99909 * 2 1 3 26 26 H 1.09005 * 109.47054 * 60.00322 * 3 2 1 27 27 H 1.09003 * 109.46792 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47264 * 299.99584 * 3 2 1 29 29 H 1.08999 * 109.47188 * 57.04600 * 4 2 1 30 30 H 1.08998 * 109.47265 * 297.04097 * 4 2 1 31 31 H 1.09006 * 109.46614 * 280.44669 * 6 5 4 32 32 H 1.08999 * 109.47062 * 40.45015 * 6 5 4 33 33 H 0.96998 * 120.00562 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47288 * 173.95502 * 15 5 4 35 35 H 1.08991 * 109.47268 * 53.95227 * 15 5 4 36 36 H 1.09002 * 109.46593 * 60.00165 * 16 15 5 37 37 H 1.08992 * 109.47226 * 300.00806 * 16 15 5 38 38 H 1.08004 * 122.61693 * 359.95282 * 18 17 16 39 39 H 1.08000 * 121.56305 * 179.72794 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5072 -0.7835 1.2141 6 6 3.9693 -1.7414 0.2006 7 6 5.4050 -1.4475 -0.1505 8 1 5.9457 -0.6807 0.3844 9 6 6.0283 -2.1575 -1.1548 10 7 5.3699 -3.0914 -1.8060 11 14 7.8077 -1.7928 -1.5906 12 1 8.6662 -2.0247 -0.4013 13 1 8.2402 -2.6868 -2.6947 14 1 7.9316 -0.3772 -2.0220 15 6 4.0520 -1.1138 2.5377 16 6 3.7595 0.0312 3.5097 17 6 4.3190 -0.3074 4.8675 18 6 5.5545 -0.0255 5.3365 19 6 5.7975 -0.4609 6.6212 20 7 4.8239 -1.0739 7.2284 21 16 3.5187 -1.1335 6.1470 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6340 -1.7325 1.2762 30 1 1.7205 -0.1777 2.1385 31 1 3.8919 -2.7542 0.5961 32 1 3.3511 -1.6518 -0.6926 33 1 5.8085 -3.5911 -2.5122 34 1 5.1296 -1.2590 2.4613 35 1 3.5871 -2.0290 2.9039 36 1 2.6819 0.1764 3.5862 37 1 4.2243 0.9464 3.1435 38 1 6.2953 0.4963 4.7488 39 1 6.7504 -0.2979 7.1026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719867813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = 24.088850 kcal Electronic energy + Delta-G solvation = -18378.373410 eV Core-core repulsion = 15640.041261 eV Total energy + Delta-G solvation = -2738.332149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.80969 -37.68720 -34.53914 -33.19083 -32.00509 -28.88411 -27.14491 -26.66566 -25.28766 -23.92287 -22.31679 -20.73339 -19.73316 -19.04900 -17.61462 -16.52427 -15.66425 -14.91514 -14.79783 -14.59803 -14.22191 -13.86548 -13.69479 -13.30487 -12.87561 -12.54158 -12.40454 -12.21309 -11.88648 -11.83966 -11.40591 -11.25439 -11.14240 -10.75004 -10.71985 -10.50748 -10.44553 -10.41686 -10.16004 -10.10798 -9.71884 -9.23807 -9.19716 -8.69408 -8.41984 -7.28982 -6.02951 -4.04064 0.77163 1.55723 1.94014 2.54259 3.32174 3.36814 3.39055 4.39336 4.53675 4.91834 5.13792 5.29601 5.32730 5.34520 5.38415 5.46793 5.54034 5.74054 5.86330 5.89579 5.91723 5.98543 6.05727 6.16291 6.20919 6.25313 6.37091 6.48842 6.55889 6.57663 6.64395 6.86834 6.97010 7.22222 7.32570 7.80001 8.10249 8.17180 8.52061 9.02806 9.59873 11.07597 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.006107 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.203695 B = 4583.740089 C = 6247.949345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.132 4.132 4 C 0.056 3.944 5 N -0.531 5.531 6 C 0.193 3.807 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.072 3.928 16 C -0.048 4.048 17 C -0.140 4.140 18 C -0.216 4.216 19 C 0.093 3.907 20 N -0.473 5.473 21 S 0.236 5.764 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.059 0.941 31 H -0.013 1.013 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 7.010 10.891 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.189 4.189 4 C -0.072 4.072 5 N -0.255 5.255 6 C 0.068 3.932 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.058 4.058 16 C -0.088 4.088 17 C -0.271 4.271 18 C -0.250 4.250 19 C -0.104 4.104 20 N -0.293 5.293 21 S 0.387 5.613 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.005 0.995 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.176 0.824 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.289 6.256 11.937 14.872 hybrid contribution 2.127 0.141 -1.086 2.393 sum -4.161 6.397 10.851 13.266 Atomic orbital electron populations 1.21821 0.96296 1.01082 1.01004 1.21100 0.93771 0.97218 0.99133 1.21657 1.03012 0.94845 0.99435 1.22155 0.89901 0.97779 0.97364 1.62104 1.05818 1.52813 1.04798 1.19775 0.96226 0.87860 0.89363 1.21105 0.96281 1.19061 1.17793 0.92011 1.24973 0.98166 0.95215 0.96211 1.69938 1.36898 1.23312 1.23749 0.86604 0.84927 0.78193 0.77928 1.20362 1.21416 1.20183 1.21925 1.01844 0.93288 0.88725 1.20308 1.00517 1.01181 0.86749 1.25638 0.98393 1.00923 1.02136 1.21372 0.98283 1.08437 0.96892 1.22827 0.99278 0.95212 0.93113 1.76771 1.03132 1.24121 1.25246 1.84035 1.22306 1.53262 1.01700 0.93306 0.93037 0.93212 0.90452 0.94117 0.90736 0.94256 0.95973 0.92265 0.99477 0.94422 0.92901 0.89603 0.96061 0.90535 0.88696 0.82439 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.15 0.34 -1.55 16 2 C -0.09 -1.51 2.92 -90.62 -0.26 -1.77 16 3 C -0.13 -2.01 9.06 37.16 0.34 -1.68 16 4 C 0.06 0.96 4.24 -3.82 -0.02 0.94 16 5 N -0.53 -10.49 3.74 -236.06 -0.88 -11.38 16 6 C 0.19 4.78 4.59 -4.97 -0.02 4.75 16 7 C -0.50 -13.61 8.61 -34.44 -0.30 -13.90 16 8 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 11 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.07 1.27 4.77 -3.82 -0.02 1.26 16 16 C -0.05 -0.66 5.76 -27.88 -0.16 -0.83 16 17 C -0.14 -1.88 5.85 -35.41 -0.21 -2.08 16 18 C -0.22 -2.66 10.17 -40.85 -0.42 -3.07 16 19 C 0.09 1.11 11.27 -18.45 -0.21 0.90 16 20 N -0.47 -6.59 12.09 28.86 0.35 -6.24 16 21 S 0.24 3.12 23.72 -107.50 -2.55 0.57 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.47 6.47 -51.93 -0.34 1.14 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.31 7.69 -51.93 -0.40 0.91 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.06 0.87 5.94 -51.93 -0.31 0.57 16 31 H -0.01 -0.34 8.00 -51.93 -0.42 -0.76 16 32 H 0.04 1.00 6.22 -51.93 -0.32 0.68 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.09 1.70 7.31 -51.93 -0.38 1.32 16 35 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 36 H 0.08 0.99 6.28 -51.93 -0.33 0.66 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -29.16 330.60 -9.66 -38.82 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.25 Total: -1.90 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -1.03 Total: -15.60 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.20 Total: -43.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.55 Total: 0.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.16 -9.66 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719867813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.912 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds