Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 C 1.53004 * 109.47031 * 119.99902 * 2 1 3 5 5 N 1.46903 * 109.47114 * 177.03968 * 4 2 1 6 6 C 1.46905 * 110.99886 * 287.89934 * 5 4 2 7 7 C 1.50698 * 109.46813 * 160.45300 * 6 5 4 8 8 H 1.08000 * 120.00057 * 4.69522 * 7 6 5 9 9 C 1.37878 * 119.99775 * 184.70636 * 7 6 5 10 10 N 1.31514 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00100 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47476 * 59.99238 * 11 9 7 13 13 H 1.48497 * 109.47306 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47026 * 299.99535 * 11 9 7 15 15 C 1.46899 * 110.99862 * 163.94595 * 5 4 2 16 16 C 1.53008 * 109.47051 * 293.94912 * 15 5 4 17 17 C 1.50699 * 109.46996 * 180.02562 * 16 15 5 18 18 C 1.35131 * 127.24992 * 90.00516 * 17 16 15 19 19 C 1.37804 * 114.76441 * 180.22276 * 18 17 16 20 20 N 1.30084 * 116.87664 * 359.51772 * 19 18 17 21 21 S 1.69602 * 107.15303 * 0.44348 * 20 19 18 22 22 H 1.09002 * 109.47307 * 300.00091 * 1 2 3 23 23 H 1.09006 * 109.46907 * 60.00165 * 1 2 3 24 24 H 1.08997 * 109.47610 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47307 * 239.99909 * 2 1 3 26 26 H 1.09005 * 109.47054 * 60.00322 * 3 2 1 27 27 H 1.09003 * 109.46792 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47264 * 299.99584 * 3 2 1 29 29 H 1.08999 * 109.47188 * 57.04600 * 4 2 1 30 30 H 1.08998 * 109.47265 * 297.04097 * 4 2 1 31 31 H 1.09006 * 109.46614 * 280.44669 * 6 5 4 32 32 H 1.08999 * 109.47062 * 40.45015 * 6 5 4 33 33 H 0.96998 * 120.00562 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47288 * 173.95502 * 15 5 4 35 35 H 1.08991 * 109.47268 * 53.95227 * 15 5 4 36 36 H 1.09002 * 109.46593 * 60.00165 * 16 15 5 37 37 H 1.08992 * 109.47226 * 300.00806 * 16 15 5 38 38 H 1.08004 * 122.61693 * 359.95282 * 18 17 16 39 39 H 1.08000 * 121.56305 * 179.72794 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5072 -0.7835 1.2141 6 6 3.9693 -1.7414 0.2006 7 6 5.4050 -1.4475 -0.1505 8 1 5.9457 -0.6807 0.3844 9 6 6.0283 -2.1575 -1.1548 10 7 5.3699 -3.0914 -1.8060 11 14 7.8077 -1.7928 -1.5906 12 1 8.6662 -2.0247 -0.4013 13 1 8.2402 -2.6868 -2.6947 14 1 7.9316 -0.3772 -2.0220 15 6 4.0520 -1.1138 2.5377 16 6 3.7595 0.0312 3.5097 17 6 4.3190 -0.3074 4.8675 18 6 5.5545 -0.0255 5.3365 19 6 5.7975 -0.4609 6.6212 20 7 4.8239 -1.0739 7.2284 21 16 3.5187 -1.1335 6.1470 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6340 -1.7325 1.2762 30 1 1.7205 -0.1777 2.1385 31 1 3.8919 -2.7542 0.5961 32 1 3.3511 -1.6518 -0.6926 33 1 5.8085 -3.5911 -2.5122 34 1 5.1296 -1.2590 2.4613 35 1 3.5871 -2.0290 2.9039 36 1 2.6819 0.1764 3.5862 37 1 4.2243 0.9464 3.1435 38 1 6.2953 0.4963 4.7488 39 1 6.7504 -0.2979 7.1026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719867813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = 7.637438 kcal Electronic energy + Delta-G solvation = -18379.086797 eV Core-core repulsion = 15640.041261 eV Total energy + Delta-G solvation = -2739.045535 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87696 -39.11899 -35.83165 -34.98794 -33.55883 -30.24881 -28.87917 -27.82333 -26.58481 -25.42098 -23.84075 -22.17157 -20.74153 -20.48773 -18.67619 -18.55196 -16.89293 -16.50570 -16.34923 -16.00724 -15.62839 -15.10195 -14.96262 -14.51764 -14.20884 -13.96782 -13.76678 -13.69035 -13.36395 -12.98690 -12.93622 -12.69229 -12.62044 -12.45934 -12.37207 -12.00224 -11.73550 -11.68825 -11.58244 -11.41678 -11.17393 -11.15159 -10.57041 -10.33844 -9.68294 -8.97850 -8.16358 -6.25537 -0.24094 0.54619 0.95493 1.42127 1.44664 1.52261 1.59617 2.42086 3.12662 3.22498 3.76840 3.97225 4.05143 4.19237 4.22321 4.35478 4.36332 4.49173 4.60858 4.69993 4.80093 4.84173 4.92949 4.95610 5.01902 5.07502 5.12338 5.15173 5.21060 5.27285 5.29985 5.40597 5.58402 5.66801 5.68105 5.73299 6.12055 6.40773 6.66603 6.89924 7.43550 8.94036 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.006107 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.203695 B = 4583.740089 C = 6247.949345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.125 4.125 4 C 0.056 3.944 5 N -0.530 5.530 6 C 0.209 3.791 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.937 5.937 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.075 3.925 16 C -0.031 4.031 17 C -0.155 4.155 18 C -0.212 4.212 19 C 0.098 3.902 20 N -0.496 5.496 21 S 0.226 5.774 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.009 0.991 30 H 0.091 0.909 31 H -0.047 1.047 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.175 0.825 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 8.878 12.086 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 C -0.182 4.182 4 C -0.072 4.072 5 N -0.254 5.254 6 C 0.083 3.917 7 C -0.552 4.552 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.578 5.578 11 Si 0.789 3.211 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.054 4.054 16 C -0.071 4.071 17 C -0.285 4.285 18 C -0.246 4.246 19 C -0.099 4.099 20 N -0.316 5.316 21 S 0.378 5.622 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.109 0.891 31 H -0.030 1.030 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.192 0.808 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.877 8.138 13.154 16.546 hybrid contribution 1.990 -0.450 -1.413 2.482 sum -3.887 7.687 11.741 14.562 Atomic orbital electron populations 1.21751 0.93517 1.01516 1.02659 1.21094 0.96101 0.97342 0.96851 1.21577 1.01134 0.94326 1.01204 1.22284 0.87848 0.97767 0.99270 1.62041 1.07856 1.50603 1.04854 1.19387 0.95353 0.87178 0.89783 1.21435 0.97291 1.18823 1.17694 0.91768 1.25871 1.02691 0.94955 0.96166 1.70079 1.38825 1.24475 1.24407 0.85521 0.79512 0.78292 0.77819 1.19330 1.21244 1.19187 1.21874 1.00144 0.94904 0.88514 1.20075 1.01575 0.99408 0.85999 1.25596 0.99128 1.01911 1.01893 1.21678 0.98084 1.07672 0.97177 1.23348 1.00044 0.93655 0.92863 1.76805 1.03767 1.25141 1.25888 1.84011 1.22677 1.53691 1.01851 0.91033 0.91960 0.93464 0.94469 0.91626 0.93531 0.93187 0.97224 0.89065 1.02972 0.96950 0.92895 0.91975 0.96923 0.89085 0.88015 0.80762 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 2 C -0.09 -3.04 2.92 -10.79 -0.03 -3.07 16 3 C -0.13 -3.63 9.06 71.98 0.65 -2.98 16 4 C 0.06 1.89 4.24 86.30 0.37 2.25 16 5 N -0.53 -21.30 3.74 -900.76 -3.37 -24.67 16 6 C 0.21 10.89 4.59 85.56 0.39 11.28 16 7 C -0.51 -28.46 8.61 25.60 0.22 -28.24 16 8 H 0.06 3.45 7.65 -2.91 -0.02 3.43 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 11 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.07 2.67 4.77 86.31 0.41 3.08 16 16 C -0.03 -0.81 5.76 29.85 0.17 -0.64 16 17 C -0.15 -3.88 5.85 24.97 0.15 -3.73 16 18 C -0.21 -4.71 10.17 21.45 0.22 -4.50 16 19 C 0.10 2.08 11.27 84.85 0.96 3.04 16 20 N -0.50 -12.99 12.09 -62.59 -0.76 -13.75 16 21 S 0.23 5.73 23.72 -56.49 -1.34 4.39 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 1.48 6.47 -2.39 -0.02 1.46 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.05 1.60 7.69 -2.39 -0.02 1.59 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.01 0.34 8.05 -2.39 -0.02 0.33 16 30 H 0.09 2.48 5.94 -2.39 -0.01 2.47 16 31 H -0.05 -2.74 8.00 -2.38 -0.02 -2.75 16 32 H 0.01 0.71 6.22 -2.39 -0.01 0.69 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.06 2.49 7.31 -2.39 -0.02 2.48 16 35 H 0.01 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.09 2.12 6.28 -2.39 -0.01 2.10 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.22 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -64.77 330.60 2.48 -62.29 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.01 Total: 7.62 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.63 Total: -25.69 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -3.84 Total: -94.51 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.34 Total: 4.39 kcal Total: -64.77 2.48 -62.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719867813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.932 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds