Wall clock time and date at job start Mon Mar 30 2020 07:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46727 * 2 1 4 4 C 1.52995 * 109.47230 * 119.99751 * 2 1 3 5 5 C 1.52998 * 109.47346 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47216 * 300.00308 * 5 4 2 7 7 C 1.52995 * 109.47214 * 59.99612 * 6 5 4 8 8 H 1.09003 * 109.46934 * 60.00259 * 7 6 5 9 9 C 1.52999 * 109.47214 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47248 * 295.00156 * 9 7 6 11 11 O 1.20822 * 119.99804 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00053 * 180.02562 * 10 9 7 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46884 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 C 1.52998 * 109.47346 * 300.00308 * 7 6 5 24 24 H 1.08998 * 109.47337 * 299.99705 * 1 2 3 25 25 H 1.09005 * 109.46807 * 60.00038 * 1 2 3 26 26 H 1.09002 * 109.46526 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47476 * 299.99567 * 3 2 1 29 29 H 1.09003 * 109.47408 * 60.00183 * 3 2 1 30 30 H 1.09003 * 109.46934 * 60.00218 * 4 2 1 31 31 H 1.08998 * 109.47404 * 300.00502 * 4 2 1 32 32 H 1.09005 * 109.46923 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47064 * 60.00129 * 5 4 2 34 34 H 1.09003 * 109.46958 * 299.99886 * 6 5 4 35 35 H 1.08994 * 109.47312 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46866 * 174.99787 * 9 7 6 37 37 H 1.09001 * 109.47046 * 55.00670 * 9 7 6 38 38 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 39 39 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 40 40 H 1.09001 * 109.47194 * 299.99482 * 14 13 12 41 41 H 1.08992 * 109.47399 * 59.99654 * 14 13 12 42 42 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47398 * 179.97438 * 23 7 6 44 44 H 1.09003 * 109.47064 * 299.99871 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0003 7 6 3.5706 -0.7203 -1.2489 8 1 3.9336 0.3075 -1.2487 9 6 4.0817 -1.4408 -2.4981 10 6 5.5835 -1.3333 -2.5609 11 8 6.1835 -0.7416 -1.6951 12 8 6.2546 -1.8950 -3.5788 13 6 7.6995 -1.7522 -3.5742 14 6 8.2850 -2.4522 -4.8022 15 6 9.7848 -2.3046 -4.7971 16 1 10.2716 -1.7650 -3.9981 17 6 10.5355 -2.8583 -5.8124 18 7 9.9428 -3.5158 -6.7850 19 14 12.3945 -2.6747 -5.8065 20 1 13.0020 -3.8137 -5.0722 21 1 12.8952 -2.6634 -7.2044 22 1 12.7639 -1.4012 -5.1380 23 6 2.0406 -0.7209 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9333 -1.2348 2.1394 33 1 3.9330 0.3072 1.2498 34 1 3.7176 -2.4693 0.0001 35 1 5.1705 -1.4415 0.0008 36 1 3.6470 -0.9813 -3.3859 37 1 3.7940 -2.4913 -2.4549 38 1 8.1065 -2.2047 -2.6699 39 1 7.9601 -0.6941 -3.6000 40 1 8.0245 -3.5103 -4.7759 41 1 7.8781 -2.0002 -5.7066 42 1 10.4709 -3.9057 -7.4991 43 1 1.6772 -0.2067 -2.1390 44 1 1.6777 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756484599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:23 Heat of formation + Delta-G solvation = -138.393450 kcal Electronic energy + Delta-G solvation = -20755.974222 eV Core-core repulsion = 17671.383785 eV Total energy + Delta-G solvation = -3084.590438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41199 -39.29942 -36.19098 -33.99863 -33.33609 -32.11545 -30.31226 -27.85817 -27.51754 -26.44897 -24.90723 -22.36014 -21.59387 -20.76977 -19.86816 -18.63729 -17.24030 -16.18177 -16.09528 -15.76876 -15.36631 -14.91602 -14.59189 -14.35377 -14.11687 -13.92476 -13.22664 -13.01366 -12.55125 -12.54284 -12.35909 -12.06244 -12.02683 -11.91524 -11.58084 -11.36235 -11.17405 -11.07767 -11.01574 -10.91566 -10.73361 -10.67457 -10.43828 -10.25645 -10.08280 -9.90375 -9.60991 -9.51538 -9.27871 -8.44106 -6.10118 -4.14447 2.64713 3.24615 3.28636 3.34958 3.40128 4.38589 4.43039 4.47682 4.55037 4.82307 4.93299 5.08861 5.18647 5.23359 5.26398 5.28848 5.38568 5.41642 5.47568 5.51316 5.58642 5.59969 5.66499 5.71499 5.78340 5.85618 5.88469 5.92237 6.08760 6.10633 6.11864 6.14622 6.19826 6.25284 6.40864 6.46340 6.65963 7.08574 7.57465 7.63418 7.87787 8.21775 8.32045 8.91248 9.49935 11.01453 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.049840 B = 0.002940 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.657995 B = 9522.100491 C = 9749.645693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.076 4.076 8 H 0.083 0.917 9 C -0.113 4.113 10 C 0.454 3.546 11 O -0.516 6.516 12 O -0.360 6.360 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.103 4.103 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 5.900 13.426 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.095 4.095 8 H 0.101 0.899 9 C -0.151 4.151 10 C 0.297 3.703 11 O -0.406 6.406 12 O -0.276 6.276 13 C 0.003 3.997 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.140 4.140 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.062 5.968 13.486 24.101 hybrid contribution 1.141 0.050 -0.071 1.144 sum -17.921 6.018 13.415 23.181 Atomic orbital electron populations 1.21867 0.94775 1.01605 1.01575 1.20509 0.94924 0.95642 0.95328 1.21998 1.01916 0.95164 1.01339 1.21607 0.95926 1.00147 0.96839 1.21542 0.95104 1.01128 0.97836 1.21736 1.02395 0.98402 0.93470 1.21033 0.94770 1.00563 0.93090 0.89915 1.21473 0.88727 1.04087 1.00819 1.23608 0.91523 0.75638 0.79523 1.90584 1.70866 1.40338 1.38837 1.86530 1.25214 1.69848 1.46042 1.23598 0.72683 1.01192 1.02238 1.19164 0.94966 0.96327 0.90836 1.20991 0.90819 1.35585 1.09046 0.92283 1.24986 0.99048 0.94912 0.95224 1.69972 1.35787 1.35383 1.11755 0.86474 0.84872 0.78661 0.77324 1.20472 1.21038 1.19720 1.21643 0.94470 1.00622 0.97289 0.92836 0.92711 0.92757 0.91674 0.92833 0.93011 0.92131 0.92365 0.92300 0.91663 0.92526 0.90021 0.88025 0.88073 0.92437 0.92431 0.95409 0.95400 0.92710 0.91782 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.48 37.16 0.31 -0.67 16 2 C -0.06 -0.52 0.77 -154.51 -0.12 -0.63 16 3 C -0.15 -1.22 7.78 37.16 0.29 -0.93 16 4 C -0.11 -0.89 4.73 -26.73 -0.13 -1.02 16 5 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 6 C -0.12 -1.40 4.94 -26.73 -0.13 -1.53 16 7 C -0.08 -0.83 1.56 -90.62 -0.14 -0.97 16 8 H 0.08 1.00 6.24 -51.93 -0.32 0.68 16 9 C -0.11 -1.36 5.29 -27.88 -0.15 -1.51 16 10 C 0.45 7.78 7.68 36.00 0.28 8.06 16 11 O -0.52 -9.90 13.72 -18.75 -0.26 -10.16 16 12 O -0.36 -7.28 10.22 -39.26 -0.40 -7.68 16 13 C 0.08 1.71 5.40 37.16 0.20 1.91 16 14 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 15 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.10 -0.88 4.01 -26.73 -0.11 -0.99 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.16 5.96 -51.93 -0.31 0.85 16 36 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -30.53 342.17 -8.13 -38.67 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.94 Total: -3.91 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.40 Total: -12.75 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.66 Total: -17.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.53 -8.13 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756484599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.725 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds