Wall clock time and date at job start Mon Mar 30 2020 07:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46727 * 2 1 4 4 C 1.52995 * 109.47230 * 119.99751 * 2 1 3 5 5 C 1.52998 * 109.47346 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47216 * 300.00308 * 5 4 2 7 7 C 1.52995 * 109.47214 * 59.99612 * 6 5 4 8 8 H 1.09003 * 109.46934 * 60.00259 * 7 6 5 9 9 C 1.52999 * 109.47214 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47248 * 295.00156 * 9 7 6 11 11 O 1.20822 * 119.99804 * 0.02562 * 10 9 7 12 12 O 1.34231 * 120.00053 * 180.02562 * 10 9 7 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46884 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 C 1.52998 * 109.47346 * 300.00308 * 7 6 5 24 24 H 1.08998 * 109.47337 * 299.99705 * 1 2 3 25 25 H 1.09005 * 109.46807 * 60.00038 * 1 2 3 26 26 H 1.09002 * 109.46526 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47476 * 299.99567 * 3 2 1 29 29 H 1.09003 * 109.47408 * 60.00183 * 3 2 1 30 30 H 1.09003 * 109.46934 * 60.00218 * 4 2 1 31 31 H 1.08998 * 109.47404 * 300.00502 * 4 2 1 32 32 H 1.09005 * 109.46923 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47064 * 60.00129 * 5 4 2 34 34 H 1.09003 * 109.46958 * 299.99886 * 6 5 4 35 35 H 1.08994 * 109.47312 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46866 * 174.99787 * 9 7 6 37 37 H 1.09001 * 109.47046 * 55.00670 * 9 7 6 38 38 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 39 39 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 40 40 H 1.09001 * 109.47194 * 299.99482 * 14 13 12 41 41 H 1.08992 * 109.47399 * 59.99654 * 14 13 12 42 42 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47398 * 179.97438 * 23 7 6 44 44 H 1.09003 * 109.47064 * 299.99871 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0003 7 6 3.5706 -0.7203 -1.2489 8 1 3.9336 0.3075 -1.2487 9 6 4.0817 -1.4408 -2.4981 10 6 5.5835 -1.3333 -2.5609 11 8 6.1835 -0.7416 -1.6951 12 8 6.2546 -1.8950 -3.5788 13 6 7.6995 -1.7522 -3.5742 14 6 8.2850 -2.4522 -4.8022 15 6 9.7848 -2.3046 -4.7971 16 1 10.2716 -1.7650 -3.9981 17 6 10.5355 -2.8583 -5.8124 18 7 9.9428 -3.5158 -6.7850 19 14 12.3945 -2.6747 -5.8065 20 1 13.0020 -3.8137 -5.0722 21 1 12.8952 -2.6634 -7.2044 22 1 12.7639 -1.4012 -5.1380 23 6 2.0406 -0.7209 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9333 -1.2348 2.1394 33 1 3.9330 0.3072 1.2498 34 1 3.7176 -2.4693 0.0001 35 1 5.1705 -1.4415 0.0008 36 1 3.6470 -0.9813 -3.3859 37 1 3.7940 -2.4913 -2.4549 38 1 8.1065 -2.2047 -2.6699 39 1 7.9601 -0.6941 -3.6000 40 1 8.0245 -3.5103 -4.7759 41 1 7.8781 -2.0002 -5.7066 42 1 10.4709 -3.9057 -7.4991 43 1 1.6772 -0.2067 -2.1390 44 1 1.6777 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756484599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:23 Heat of formation + Delta-G solvation = -153.249836 kcal Electronic energy + Delta-G solvation = -20756.618443 eV Core-core repulsion = 17671.383785 eV Total energy + Delta-G solvation = -3085.234659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65778 -40.30751 -37.73390 -35.45971 -34.89560 -32.96817 -32.29252 -28.91359 -28.14754 -27.16124 -26.85423 -23.54178 -22.85718 -22.30981 -20.98929 -19.43499 -18.85104 -18.06806 -17.60931 -17.21311 -16.50210 -16.13724 -15.76200 -15.38405 -15.19955 -14.78981 -14.44988 -14.39909 -14.08333 -13.74012 -13.40279 -13.12076 -13.01850 -12.76889 -12.71251 -12.70055 -12.57341 -12.55494 -12.27634 -12.10593 -11.83209 -11.78370 -11.68016 -11.54811 -11.46034 -11.38903 -11.03888 -10.81069 -10.71338 -10.62934 -8.28714 -6.42215 1.25438 1.39719 1.41751 1.52935 1.83926 2.39368 3.05511 3.62637 3.69385 3.75160 3.95473 4.08647 4.20692 4.22687 4.27234 4.33911 4.47625 4.51381 4.55929 4.63556 4.68241 4.73246 4.78944 4.84412 4.90477 4.96429 5.04890 5.13029 5.14310 5.19751 5.25793 5.26400 5.33366 5.36306 5.44800 5.50341 5.54514 5.56469 5.63225 5.70213 5.77561 6.05014 6.70686 6.82116 7.27716 8.84020 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.049840 B = 0.002940 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.657995 B = 9522.100491 C = 9749.645693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.071 4.071 8 H 0.067 0.933 9 C -0.106 4.106 10 C 0.449 3.551 11 O -0.539 6.539 12 O -0.370 6.370 13 C 0.091 3.909 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.268 0.732 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 6.124 14.040 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.090 4.090 8 H 0.085 0.915 9 C -0.143 4.143 10 C 0.294 3.706 11 O -0.429 6.429 12 O -0.287 6.287 13 C 0.018 3.982 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.129 6.199 14.117 25.355 hybrid contribution 1.410 -0.008 -0.227 1.429 sum -18.718 6.191 13.890 24.117 Atomic orbital electron populations 1.21828 0.93473 1.02133 1.02039 1.20519 0.95871 0.95135 0.94843 1.21989 1.00867 0.95709 1.01823 1.21584 0.94353 1.00726 0.97438 1.21516 0.96523 1.00333 0.97074 1.21698 1.00268 0.99318 0.94745 1.21010 0.96541 0.99315 0.92120 0.91467 1.21683 0.84315 1.05864 1.02420 1.24708 0.93326 0.74433 0.78133 1.90583 1.71724 1.41222 1.39375 1.86528 1.23648 1.70816 1.47728 1.23086 0.74566 1.00382 1.00170 1.18974 0.94848 0.95127 0.91685 1.21381 0.91930 1.36062 1.09573 0.91823 1.25973 1.04556 0.94187 0.94568 1.70090 1.38002 1.36046 1.12462 0.85319 0.78124 0.79104 0.77733 1.19471 1.20248 1.18787 1.21626 0.92196 1.01598 0.98105 0.92380 0.92319 0.92189 0.93282 0.92492 0.92430 0.91493 0.91547 0.92180 0.92573 0.91638 0.93428 0.85723 0.85967 0.92519 0.92510 0.97581 0.97555 0.92270 0.90746 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.48 71.98 0.61 -0.90 16 2 C -0.06 -0.88 0.77 -52.18 -0.04 -0.92 16 3 C -0.15 -2.23 7.78 71.98 0.56 -1.67 16 4 C -0.10 -1.51 4.73 30.59 0.14 -1.36 16 5 C -0.12 -2.21 5.65 30.59 0.17 -2.03 16 6 C -0.12 -2.74 4.94 30.59 0.15 -2.59 16 7 C -0.07 -1.46 1.56 -10.80 -0.02 -1.47 16 8 H 0.07 1.60 6.24 -2.39 -0.01 1.59 16 9 C -0.11 -2.36 5.29 29.85 0.16 -2.20 16 10 C 0.45 15.34 7.68 71.24 0.55 15.88 16 11 O -0.54 -21.00 13.72 21.98 0.30 -20.69 16 12 O -0.37 -15.12 10.22 -51.42 -0.53 -15.64 16 13 C 0.09 4.22 5.40 71.98 0.39 4.61 16 14 C 0.03 1.69 5.35 29.85 0.16 1.85 16 15 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.01 0.35 5.46 84.66 0.46 0.82 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 19 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 C -0.10 -1.43 4.01 30.59 0.12 -1.31 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.90 4.81 -2.38 -0.01 0.89 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 1.15 6.43 -2.39 -0.02 1.14 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.39 5.96 -2.39 -0.01 1.37 16 36 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 39 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.30 342.17 6.68 -59.61 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.94 Total: 9.29 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.65 Total: -22.88 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.22 Total: -36.34 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.30 6.68 -59.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756484599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.635 kcal (2) G-P(sol) polarization free energy of solvation -66.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds