Wall clock time and date at job start Mon Mar 30 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52371 * 2 1 4 4 C 1.53328 * 109.49476 * 239.91795 * 2 1 3 5 5 C 1.53249 * 108.49173 * 186.07378 * 4 2 1 6 6 C 1.52719 * 117.85327 * 196.15199 * 5 4 2 7 7 C 1.52729 * 117.84682 * 265.19681 * 5 4 2 8 8 H 1.08992 * 117.50738 * 144.67645 * 7 5 4 9 9 C 1.50704 * 117.50245 * 359.64316 * 7 5 4 10 10 O 1.20826 * 120.00159 * 264.30404 * 9 7 5 11 11 O 1.34233 * 119.99892 * 84.31082 * 9 7 5 12 12 C 1.45194 * 116.99847 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47097 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47324 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00004 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00357 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99688 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00598 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46995 * 89.99725 * 18 16 14 20 20 H 1.48489 * 109.47722 * 209.99857 * 18 16 14 21 21 H 1.48503 * 109.46987 * 330.00572 * 18 16 14 22 22 C 1.53242 * 114.65372 * 50.65320 * 5 4 2 23 23 C 1.53331 * 108.65967 * 309.24562 * 22 5 4 24 24 O 1.42878 * 109.49873 * 120.08835 * 2 1 3 25 25 H 1.08997 * 109.47276 * 180.08339 * 1 2 3 26 26 H 1.09007 * 109.46473 * 300.08085 * 1 2 3 27 27 H 1.08999 * 109.47100 * 60.07811 * 1 2 3 28 28 H 1.09005 * 109.63352 * 66.37812 * 4 2 1 29 29 H 1.08999 * 109.63940 * 305.77439 * 4 2 1 30 30 H 1.09002 * 117.50164 * 215.27801 * 6 5 4 31 31 H 1.08991 * 117.50912 * 0.33054 * 6 5 4 32 32 H 1.08995 * 109.47625 * 299.99860 * 12 11 9 33 33 H 1.09004 * 109.46928 * 60.00440 * 12 11 9 34 34 H 1.08999 * 109.47176 * 300.00069 * 13 12 11 35 35 H 1.09003 * 109.46678 * 59.99789 * 13 12 11 36 36 H 0.96999 * 119.99712 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.63084 * 69.04686 * 22 5 4 38 38 H 1.08998 * 109.63367 * 189.44421 * 22 5 4 39 39 H 1.09004 * 109.50028 * 174.02495 * 23 22 5 40 40 H 1.08997 * 109.49758 * 294.12909 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7245 -1.2507 5 6 3.5663 -0.8455 -1.1528 6 6 4.3385 -1.1839 -2.4262 7 6 4.4124 0.2266 -1.8365 8 1 5.3418 0.5209 -1.3492 9 6 3.6853 1.3256 -2.5677 10 8 3.5014 1.2398 -3.7588 11 8 3.2421 2.3998 -1.8958 12 6 2.5509 3.4192 -2.6646 13 6 2.1229 4.5565 -1.7350 14 6 1.4049 5.6143 -2.5328 15 1 1.2679 5.4882 -3.5966 16 6 0.9238 6.7435 -1.9049 17 7 1.0910 6.8973 -0.6095 18 14 0.0344 8.0550 -2.8939 19 1 -1.4194 7.7532 -2.9217 20 1 0.2524 9.3824 -2.2650 21 1 0.5629 8.0719 -4.2816 22 6 4.0778 -1.4251 0.1704 23 6 3.4309 -0.6535 1.3267 24 8 2.0069 -0.6752 1.1654 25 1 -0.3634 -1.0276 0.0015 26 1 -0.3632 0.5151 0.8894 27 1 -0.3633 0.5126 -0.8907 28 1 1.7761 -0.1524 -2.1398 29 1 1.5983 -1.7187 -1.3054 30 1 5.2197 -1.8178 -2.3270 31 1 3.7641 -1.3169 -3.3429 32 1 3.2179 3.8093 -3.4333 33 1 1.6693 2.9839 -3.1352 34 1 1.4557 4.1662 -0.9665 35 1 3.0042 4.9918 -1.2639 36 1 0.7529 7.6920 -0.1678 37 1 3.8080 -2.4791 0.2371 38 1 5.1616 -1.3205 0.2213 39 1 3.7018 -1.1216 2.2731 40 1 3.7819 0.3784 1.3169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759683714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:58 Heat of formation + Delta-G solvation = -130.697633 kcal Electronic energy + Delta-G solvation = -21195.212402 eV Core-core repulsion = 17975.122586 eV Total energy + Delta-G solvation = -3220.089816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71201 -39.19371 -36.93226 -35.82432 -33.35743 -32.82358 -30.55899 -30.17547 -27.34340 -25.85366 -24.24804 -23.36800 -21.48638 -21.03214 -20.42763 -19.05850 -17.39048 -16.44381 -16.36027 -16.22894 -15.91124 -15.47171 -14.97402 -14.57364 -14.16015 -13.90463 -13.47075 -13.06286 -12.87271 -12.57905 -12.38603 -12.17063 -12.14345 -11.91222 -11.27945 -11.26840 -11.13099 -11.06925 -10.88538 -10.77611 -10.70335 -10.42239 -10.28834 -9.99755 -9.68024 -9.64498 -9.32228 -9.25211 -8.46119 -6.12101 -4.16685 2.43401 3.02667 3.27262 3.33595 3.37605 3.51666 3.75915 4.34974 4.41118 4.44008 4.60957 4.68099 4.87488 5.15404 5.23797 5.24552 5.28556 5.33942 5.43468 5.46911 5.54827 5.61088 5.71255 5.76912 5.84005 5.88209 5.92741 6.00285 6.05200 6.07702 6.20562 6.28060 6.60272 6.95670 7.27432 7.53349 7.59443 7.84690 8.16918 8.24694 8.88743 9.47938 10.99319 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.004746 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.674291 B = 5897.885100 C = 6536.702693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.138 4.138 7 C -0.157 4.157 8 H 0.137 0.863 9 C 0.486 3.514 10 O -0.516 6.516 11 O -0.352 6.352 12 C 0.074 3.926 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.115 4.115 23 C 0.062 3.938 24 O -0.382 6.382 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -17.552 2.482 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.102 4.102 6 C -0.175 4.175 7 C -0.175 4.175 8 H 0.154 0.846 9 C 0.329 3.671 10 O -0.405 6.405 11 O -0.268 6.268 12 C 0.002 3.998 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.153 4.153 23 C -0.015 4.015 24 O -0.301 6.301 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.040 -17.481 2.406 18.352 hybrid contribution -0.152 1.038 -0.906 1.386 sum 4.888 -16.443 1.500 17.219 Atomic orbital electron populations 1.21757 0.92862 1.02374 1.03110 1.22162 0.95102 0.95880 0.83952 0.90876 1.21911 0.91822 1.02115 0.99387 1.21572 0.94149 1.00030 0.94406 1.23135 1.02616 0.94335 0.97389 1.21963 1.01864 0.88475 1.05240 0.84565 1.22410 0.76281 0.82475 0.85916 1.90628 1.54568 1.78967 1.16351 1.86530 1.67082 1.29443 1.43696 1.23665 0.94257 0.86430 0.95478 1.19157 0.97256 0.89937 0.94761 1.20967 1.37124 1.03664 0.94761 0.92303 1.24973 0.95948 0.98158 0.94979 1.69977 1.45747 1.28335 1.08709 0.86481 0.79976 0.80772 0.80148 1.20453 1.21028 1.19730 1.21843 1.00339 1.00525 0.92569 1.22647 0.81277 0.99972 0.97584 1.87906 1.21061 1.77099 1.44041 0.92188 0.91500 0.90830 0.90877 0.90143 0.87392 0.87510 0.92352 0.92404 0.95352 0.95403 0.92693 0.90179 0.90479 0.88768 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.57 37.16 0.36 -1.48 16 2 C 0.09 1.20 3.27 -26.56 -0.09 1.12 16 3 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 4 C -0.11 -1.47 4.87 -26.43 -0.13 -1.60 16 5 C -0.10 -1.16 2.03 -154.54 -0.31 -1.47 16 6 C -0.14 -1.47 9.52 -26.85 -0.26 -1.73 16 7 C -0.16 -2.03 5.98 -91.88 -0.55 -2.58 16 8 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 9 C 0.49 8.59 5.96 36.01 0.21 8.80 16 10 O -0.52 -10.32 16.35 -18.75 -0.31 -10.63 16 11 O -0.35 -7.01 10.14 -39.27 -0.40 -7.41 16 12 C 0.07 1.65 5.40 37.16 0.20 1.85 16 13 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 14 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.12 -1.07 5.90 -26.43 -0.16 -1.22 16 23 C 0.06 0.66 6.89 37.33 0.26 0.92 16 24 O -0.38 -5.17 10.34 -35.23 -0.36 -5.53 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.06 6.83 -51.93 -0.35 0.71 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.25 7.93 -51.93 -0.41 0.84 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -31.23 333.06 -8.00 -39.22 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.64 Total: -1.20 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.02 Total: -10.29 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.07 Total: -23.57 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.23 -8.00 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759683714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.475 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds