Wall clock time and date at job start Mon Mar 30 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52371 * 2 1 4 4 C 1.53328 * 109.49476 * 239.91795 * 2 1 3 5 5 C 1.53249 * 108.49173 * 186.07378 * 4 2 1 6 6 C 1.52719 * 117.85327 * 196.15199 * 5 4 2 7 7 C 1.52729 * 117.84682 * 265.19681 * 5 4 2 8 8 H 1.08992 * 117.50738 * 144.67645 * 7 5 4 9 9 C 1.50704 * 117.50245 * 359.64316 * 7 5 4 10 10 O 1.20826 * 120.00159 * 264.30404 * 9 7 5 11 11 O 1.34233 * 119.99892 * 84.31082 * 9 7 5 12 12 C 1.45194 * 116.99847 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47097 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47324 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00004 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00357 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99688 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00598 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46995 * 89.99725 * 18 16 14 20 20 H 1.48489 * 109.47722 * 209.99857 * 18 16 14 21 21 H 1.48503 * 109.46987 * 330.00572 * 18 16 14 22 22 C 1.53242 * 114.65372 * 50.65320 * 5 4 2 23 23 C 1.53331 * 108.65967 * 309.24562 * 22 5 4 24 24 O 1.42878 * 109.49873 * 120.08835 * 2 1 3 25 25 H 1.08997 * 109.47276 * 180.08339 * 1 2 3 26 26 H 1.09007 * 109.46473 * 300.08085 * 1 2 3 27 27 H 1.08999 * 109.47100 * 60.07811 * 1 2 3 28 28 H 1.09005 * 109.63352 * 66.37812 * 4 2 1 29 29 H 1.08999 * 109.63940 * 305.77439 * 4 2 1 30 30 H 1.09002 * 117.50164 * 215.27801 * 6 5 4 31 31 H 1.08991 * 117.50912 * 0.33054 * 6 5 4 32 32 H 1.08995 * 109.47625 * 299.99860 * 12 11 9 33 33 H 1.09004 * 109.46928 * 60.00440 * 12 11 9 34 34 H 1.08999 * 109.47176 * 300.00069 * 13 12 11 35 35 H 1.09003 * 109.46678 * 59.99789 * 13 12 11 36 36 H 0.96999 * 119.99712 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.63084 * 69.04686 * 22 5 4 38 38 H 1.08998 * 109.63367 * 189.44421 * 22 5 4 39 39 H 1.09004 * 109.50028 * 174.02495 * 23 22 5 40 40 H 1.08997 * 109.49758 * 294.12909 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7245 -1.2507 5 6 3.5663 -0.8455 -1.1528 6 6 4.3385 -1.1839 -2.4262 7 6 4.4124 0.2266 -1.8365 8 1 5.3418 0.5209 -1.3492 9 6 3.6853 1.3256 -2.5677 10 8 3.5014 1.2398 -3.7588 11 8 3.2421 2.3998 -1.8958 12 6 2.5509 3.4192 -2.6646 13 6 2.1229 4.5565 -1.7350 14 6 1.4049 5.6143 -2.5328 15 1 1.2679 5.4882 -3.5966 16 6 0.9238 6.7435 -1.9049 17 7 1.0910 6.8973 -0.6095 18 14 0.0344 8.0550 -2.8939 19 1 -1.4194 7.7532 -2.9217 20 1 0.2524 9.3824 -2.2650 21 1 0.5629 8.0719 -4.2816 22 6 4.0778 -1.4251 0.1704 23 6 3.4309 -0.6535 1.3267 24 8 2.0069 -0.6752 1.1654 25 1 -0.3634 -1.0276 0.0015 26 1 -0.3632 0.5151 0.8894 27 1 -0.3633 0.5126 -0.8907 28 1 1.7761 -0.1524 -2.1398 29 1 1.5983 -1.7187 -1.3054 30 1 5.2197 -1.8178 -2.3270 31 1 3.7641 -1.3169 -3.3429 32 1 3.2179 3.8093 -3.4333 33 1 1.6693 2.9839 -3.1352 34 1 1.4557 4.1662 -0.9665 35 1 3.0042 4.9918 -1.2639 36 1 0.7529 7.6920 -0.1678 37 1 3.8080 -2.4791 0.2371 38 1 5.1616 -1.3205 0.2213 39 1 3.7018 -1.1216 2.2731 40 1 3.7819 0.3784 1.3169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759683714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:58 Heat of formation + Delta-G solvation = -148.300750 kcal Electronic energy + Delta-G solvation = -21195.975731 eV Core-core repulsion = 17975.122586 eV Total energy + Delta-G solvation = -3220.853145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96820 -40.41193 -38.17587 -37.22809 -35.47511 -33.80759 -32.40857 -31.28239 -28.36111 -27.57146 -25.78626 -24.28173 -22.97455 -22.52926 -21.68477 -20.18039 -18.93619 -18.20661 -17.74775 -17.44927 -17.31583 -16.66708 -16.53256 -15.96523 -15.35059 -15.12923 -14.57475 -14.46685 -14.35732 -14.21534 -13.48171 -13.33490 -13.23423 -13.14999 -12.98422 -12.82746 -12.64314 -12.62257 -12.19449 -12.09443 -12.00669 -11.70793 -11.56772 -11.53234 -11.41708 -11.28891 -10.99121 -10.63907 -10.23206 -8.29353 -6.43093 1.04432 1.39123 1.41236 1.51944 1.66296 2.37883 2.54323 2.79859 3.05042 3.41381 3.49396 3.61603 3.77302 3.91850 3.94772 4.14365 4.18631 4.21038 4.31078 4.41728 4.55223 4.56987 4.63474 4.67413 4.75012 4.77607 4.83561 4.90383 4.99993 5.06662 5.14746 5.22024 5.23499 5.24572 5.41660 5.50496 5.70588 6.03169 6.28806 6.66954 6.71639 7.27004 8.83247 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.004746 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.674291 B = 5897.885100 C = 6536.702693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.115 4.115 7 C -0.175 4.175 8 H 0.161 0.839 9 C 0.483 3.517 10 O -0.542 6.542 11 O -0.360 6.360 12 C 0.090 3.910 13 C 0.034 3.966 14 C -0.551 4.551 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.973 3.027 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.106 4.106 23 C 0.051 3.949 24 O -0.394 6.394 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -19.160 2.203 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.056 0.944 4 C -0.151 4.151 5 C -0.100 4.100 6 C -0.152 4.152 7 C -0.194 4.194 8 H 0.179 0.821 9 C 0.328 3.672 10 O -0.433 6.433 11 O -0.277 6.277 12 C 0.017 3.983 13 C -0.003 4.003 14 C -0.589 4.589 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.143 4.143 23 C -0.025 4.025 24 O -0.313 6.313 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.165 0.835 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.846 -19.112 2.128 20.099 hybrid contribution -0.376 1.486 -0.765 1.713 sum 5.470 -17.626 1.363 18.505 Atomic orbital electron populations 1.21757 0.92506 1.03371 1.02471 1.22022 0.95577 0.94336 0.85043 0.94396 1.21860 0.93475 1.02286 0.97479 1.21714 0.92987 0.98955 0.96330 1.23295 1.03341 0.92339 0.96194 1.22171 1.02596 0.87745 1.06852 0.82125 1.23405 0.75498 0.82282 0.85967 1.90605 1.55728 1.79317 1.17673 1.86534 1.67272 1.30061 1.43800 1.23156 0.94493 0.86283 0.94352 1.18944 0.95677 0.91008 0.94645 1.21349 1.37728 1.04588 0.95245 0.91807 1.25949 0.96528 1.00536 0.96067 1.70099 1.46611 1.29280 1.10498 0.85331 0.78791 0.77532 0.78713 1.19461 1.20285 1.18767 1.21867 1.01754 1.00763 0.89902 1.22931 0.79889 0.99906 0.99807 1.87884 1.23014 1.76736 1.43702 0.90296 0.92129 0.91534 0.93374 0.88412 0.83499 0.88783 0.92421 0.92470 0.97611 0.97690 0.92291 0.88424 0.87670 0.86185 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.57 71.98 0.69 -3.09 16 2 C 0.09 2.50 3.27 30.71 0.10 2.60 16 3 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 4 C -0.11 -2.84 4.87 30.79 0.15 -2.69 16 5 C -0.10 -2.06 2.03 -52.20 -0.11 -2.16 16 6 C -0.12 -2.10 9.52 30.52 0.29 -1.81 16 7 C -0.18 -4.26 5.98 -11.61 -0.07 -4.32 16 8 H 0.16 3.10 8.14 -2.39 -0.02 3.08 16 9 C 0.48 17.25 5.96 71.24 0.42 17.67 16 10 O -0.54 -21.99 16.35 21.96 0.36 -21.63 16 11 O -0.36 -14.96 10.14 -51.44 -0.52 -15.48 16 12 C 0.09 4.19 5.40 71.98 0.39 4.58 16 13 C 0.03 1.88 5.35 29.85 0.16 2.04 16 14 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 15 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 18 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 C -0.11 -1.57 5.90 30.79 0.18 -1.39 16 23 C 0.05 0.99 6.89 72.09 0.50 1.49 16 24 O -0.39 -10.34 10.34 -148.98 -1.54 -11.88 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.43 6.83 -2.38 -0.02 1.42 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 2.02 7.93 -2.39 -0.02 2.00 16 32 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 33 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.00 0.27 8.14 -2.39 -0.02 0.26 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.03 8.08 -2.39 -0.02 1.02 16 39 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.37 333.06 5.01 -64.36 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.00 Total: 11.79 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 3.40 Total: -17.54 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.70 Total: -48.99 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.37 5.01 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759683714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.940 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds