Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.50158 * 2 1 4 4 C 1.53337 * 109.49508 * 239.93909 * 2 1 3 5 5 C 1.53250 * 108.47922 * 186.03166 * 4 2 1 6 6 C 1.52705 * 117.88340 * 196.28272 * 5 4 2 7 7 C 1.52737 * 117.83119 * 265.33204 * 5 4 2 8 8 H 1.08997 * 117.50523 * 359.63869 * 7 5 4 9 9 C 1.50696 * 117.50554 * 144.67134 * 7 5 4 10 10 O 1.20819 * 120.00221 * 95.68467 * 9 7 5 11 11 O 1.34235 * 120.00135 * 275.68460 * 9 7 5 12 12 C 1.45198 * 117.00286 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46982 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.46731 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00462 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99785 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00313 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47186 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46794 * 299.99991 * 18 16 14 21 21 H 1.48504 * 109.46831 * 59.99652 * 18 16 14 22 22 C 1.53247 * 114.64080 * 50.71685 * 5 4 2 23 23 C 1.53335 * 108.47804 * 309.28612 * 22 5 4 24 24 O 1.42869 * 109.52727 * 120.08207 * 2 1 3 25 25 H 1.09004 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47137 * 300.06290 * 1 2 3 27 27 H 1.08998 * 109.47761 * 60.05800 * 1 2 3 28 28 H 1.09003 * 109.63740 * 66.33849 * 4 2 1 29 29 H 1.08994 * 109.80572 * 305.83159 * 4 2 1 30 30 H 1.09003 * 117.50533 * 0.30229 * 6 5 4 31 31 H 1.09004 * 117.50548 * 215.25377 * 6 5 4 32 32 H 1.08994 * 109.47053 * 59.99963 * 12 11 9 33 33 H 1.09001 * 109.46846 * 300.00004 * 12 11 9 34 34 H 1.09000 * 109.47267 * 60.00529 * 13 12 11 35 35 H 1.09001 * 109.47382 * 299.99735 * 13 12 11 36 36 H 0.96993 * 119.99642 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.63299 * 68.97944 * 22 5 4 38 38 H 1.08994 * 109.63789 * 189.58775 * 22 5 4 39 39 H 1.09007 * 109.49571 * 294.03026 * 23 22 5 40 40 H 1.08997 * 109.52179 * 173.95233 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7241 -1.2510 5 6 3.5663 -0.8440 -1.1533 6 6 4.3394 -1.1787 -2.4270 7 6 4.4112 0.2307 -1.8345 8 1 3.8845 1.0263 -2.3615 9 6 5.6959 0.6375 -1.1599 10 8 6.7406 0.1312 -1.4945 11 8 5.6795 1.5623 -0.1871 12 6 6.9540 1.9047 0.4185 13 6 6.7368 2.9675 1.4974 14 6 8.0595 3.3224 2.1264 15 1 8.9646 2.8386 1.7899 16 6 8.1142 4.2648 3.1314 17 7 7.0121 4.8543 3.5408 18 14 9.7538 4.7052 3.9106 19 1 9.5430 5.7367 4.9579 20 1 10.3524 3.4921 4.5233 21 1 10.6695 5.2373 2.8696 22 6 4.0781 -1.4249 0.1692 23 6 3.4272 -0.6530 1.3232 24 8 2.0075 -0.6749 1.1652 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5148 0.8895 27 1 -0.3634 0.5129 -0.8905 28 1 1.7755 -0.1521 -2.1399 29 1 1.5990 -1.7184 -1.3093 30 1 3.7655 -1.3105 -3.3443 31 1 5.2214 -1.8116 -2.3288 32 1 7.6261 2.2952 -0.3456 33 1 7.3934 1.0143 0.8683 34 1 6.0645 2.5774 2.2616 35 1 6.2976 3.8578 1.0473 36 1 7.0506 5.5169 4.2480 37 1 3.8080 -2.4787 0.2352 38 1 5.1614 -1.3174 0.2216 39 1 3.7783 0.3790 1.3143 40 1 3.6951 -1.1203 2.2708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759683722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -130.789703 kcal Electronic energy + Delta-G solvation = -21013.127479 eV Core-core repulsion = 17793.033670 eV Total energy + Delta-G solvation = -3220.093809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71895 -39.23972 -36.95293 -35.82934 -33.35635 -32.93051 -30.49471 -30.19035 -27.57435 -25.71808 -24.12503 -23.52248 -21.54936 -21.03565 -20.44419 -19.05437 -17.37085 -16.43877 -16.39272 -16.23177 -15.92559 -15.42698 -15.14237 -14.57071 -14.30253 -13.68527 -13.44382 -13.08806 -12.93617 -12.64774 -12.40186 -12.37705 -12.20878 -11.95784 -11.28232 -11.24218 -11.19039 -11.07952 -10.90531 -10.76014 -10.71028 -10.43899 -10.29798 -10.00019 -9.67842 -9.64280 -9.33479 -9.26605 -8.45706 -6.11836 -4.16548 2.43228 3.02457 3.28988 3.33214 3.36392 3.51692 3.74574 4.33157 4.39142 4.45046 4.61894 4.67800 4.82399 5.10911 5.17768 5.24621 5.26063 5.32231 5.40122 5.46791 5.53538 5.56936 5.64323 5.65398 5.82106 5.88716 5.92365 6.00913 6.05236 6.06457 6.07949 6.13603 6.60242 6.95549 7.27139 7.53124 7.59435 7.84710 8.16910 8.24616 8.88634 9.47993 10.99548 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.004453 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.587938 B = 6286.434018 C = 7049.579162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.101 4.101 6 C -0.138 4.138 7 C -0.157 4.157 8 H 0.137 0.863 9 C 0.486 3.514 10 O -0.516 6.516 11 O -0.352 6.352 12 C 0.074 3.926 13 C 0.026 3.974 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.121 4.121 23 C 0.061 3.939 24 O -0.380 6.380 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -11.532 -9.766 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.175 4.175 8 H 0.154 0.846 9 C 0.329 3.671 10 O -0.405 6.405 11 O -0.268 6.268 12 C 0.002 3.998 13 C -0.011 4.011 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.159 4.159 23 C -0.015 4.015 24 O -0.299 6.299 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.073 -11.596 -9.559 19.277 hybrid contribution 1.373 0.510 0.149 1.472 sum -10.700 -11.086 -9.410 18.054 Atomic orbital electron populations 1.21761 0.93146 1.02692 1.02520 1.22116 0.94728 0.95610 0.84826 0.91771 1.21882 0.91602 1.02134 0.99004 1.21570 0.93896 1.00118 0.94555 1.23134 1.02408 0.95091 0.96830 1.21961 0.95817 0.94972 1.04787 0.84578 1.22407 0.89658 0.77002 0.78007 1.90627 1.33388 1.53650 1.62850 1.86531 1.39556 1.53472 1.47207 1.23666 0.80362 0.99770 0.96040 1.19152 0.98166 0.92230 0.91536 1.20935 0.92848 1.23252 1.19590 0.92347 1.24975 0.96822 0.95737 0.96501 1.69963 1.27049 1.26886 1.28877 0.86537 0.83556 0.78257 0.78981 1.21084 1.20050 1.20071 1.21873 1.00579 1.00604 0.92829 1.22637 0.80331 1.00879 0.97698 1.87835 1.21659 1.76899 1.43521 0.91971 0.91668 0.91198 0.90529 0.90140 0.87401 0.87498 0.92352 0.92385 0.95371 0.95396 0.92628 0.90136 0.90815 0.91542 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.57 37.15 0.36 -0.91 16 2 C 0.08 0.94 3.26 -26.56 -0.09 0.86 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -1.03 5.20 -26.43 -0.14 -1.17 16 5 C -0.10 -1.15 2.03 -154.54 -0.31 -1.47 16 6 C -0.14 -1.47 9.52 -26.86 -0.26 -1.73 16 7 C -0.16 -2.03 5.98 -91.88 -0.55 -2.58 16 8 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 9 C 0.49 8.57 5.96 36.00 0.21 8.79 16 10 O -0.52 -10.32 16.35 -18.74 -0.31 -10.62 16 11 O -0.35 -7.01 10.12 -39.27 -0.40 -7.41 16 12 C 0.07 1.65 5.40 37.16 0.20 1.85 16 13 C 0.03 0.68 5.35 -27.88 -0.15 0.54 16 14 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.75 5.46 -17.81 -0.10 1.66 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.12 -1.52 5.58 -26.43 -0.15 -1.67 16 23 C 0.06 0.83 6.85 37.33 0.26 1.09 16 24 O -0.38 -5.13 10.33 -35.23 -0.36 -5.49 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.25 7.93 -51.93 -0.41 0.84 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.05 6.83 -51.93 -0.35 0.70 16 39 H 0.07 1.04 8.04 -51.92 -0.42 0.62 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.22 332.98 -8.00 -39.22 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.64 Total: -1.64 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.02 Total: -9.88 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.07 Total: -23.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.22 -8.00 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759683722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.574 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds