Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.50158 * 2 1 4 4 C 1.53337 * 109.49508 * 239.93909 * 2 1 3 5 5 C 1.53250 * 108.47922 * 186.03166 * 4 2 1 6 6 C 1.52705 * 117.88340 * 196.28272 * 5 4 2 7 7 C 1.52737 * 117.83119 * 265.33204 * 5 4 2 8 8 H 1.08997 * 117.50523 * 359.63869 * 7 5 4 9 9 C 1.50696 * 117.50554 * 144.67134 * 7 5 4 10 10 O 1.20819 * 120.00221 * 95.68467 * 9 7 5 11 11 O 1.34235 * 120.00135 * 275.68460 * 9 7 5 12 12 C 1.45198 * 117.00286 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46982 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.46731 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00462 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99785 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00313 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47186 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46794 * 299.99991 * 18 16 14 21 21 H 1.48504 * 109.46831 * 59.99652 * 18 16 14 22 22 C 1.53247 * 114.64080 * 50.71685 * 5 4 2 23 23 C 1.53335 * 108.47804 * 309.28612 * 22 5 4 24 24 O 1.42869 * 109.52727 * 120.08207 * 2 1 3 25 25 H 1.09004 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47137 * 300.06290 * 1 2 3 27 27 H 1.08998 * 109.47761 * 60.05800 * 1 2 3 28 28 H 1.09003 * 109.63740 * 66.33849 * 4 2 1 29 29 H 1.08994 * 109.80572 * 305.83159 * 4 2 1 30 30 H 1.09003 * 117.50533 * 0.30229 * 6 5 4 31 31 H 1.09004 * 117.50548 * 215.25377 * 6 5 4 32 32 H 1.08994 * 109.47053 * 59.99963 * 12 11 9 33 33 H 1.09001 * 109.46846 * 300.00004 * 12 11 9 34 34 H 1.09000 * 109.47267 * 60.00529 * 13 12 11 35 35 H 1.09001 * 109.47382 * 299.99735 * 13 12 11 36 36 H 0.96993 * 119.99642 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.63299 * 68.97944 * 22 5 4 38 38 H 1.08994 * 109.63789 * 189.58775 * 22 5 4 39 39 H 1.09007 * 109.49571 * 294.03026 * 23 22 5 40 40 H 1.08997 * 109.52179 * 173.95233 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7241 -1.2510 5 6 3.5663 -0.8440 -1.1533 6 6 4.3394 -1.1787 -2.4270 7 6 4.4112 0.2307 -1.8345 8 1 3.8845 1.0263 -2.3615 9 6 5.6959 0.6375 -1.1599 10 8 6.7406 0.1312 -1.4945 11 8 5.6795 1.5623 -0.1871 12 6 6.9540 1.9047 0.4185 13 6 6.7368 2.9675 1.4974 14 6 8.0595 3.3224 2.1264 15 1 8.9646 2.8386 1.7899 16 6 8.1142 4.2648 3.1314 17 7 7.0121 4.8543 3.5408 18 14 9.7538 4.7052 3.9106 19 1 9.5430 5.7367 4.9579 20 1 10.3524 3.4921 4.5233 21 1 10.6695 5.2373 2.8696 22 6 4.0781 -1.4249 0.1692 23 6 3.4272 -0.6530 1.3232 24 8 2.0075 -0.6749 1.1652 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5148 0.8895 27 1 -0.3634 0.5129 -0.8905 28 1 1.7755 -0.1521 -2.1399 29 1 1.5990 -1.7184 -1.3093 30 1 3.7655 -1.3105 -3.3443 31 1 5.2214 -1.8116 -2.3288 32 1 7.6261 2.2952 -0.3456 33 1 7.3934 1.0143 0.8683 34 1 6.0645 2.5774 2.2616 35 1 6.2976 3.8578 1.0473 36 1 7.0506 5.5169 4.2480 37 1 3.8080 -2.4787 0.2352 38 1 5.1614 -1.3174 0.2216 39 1 3.7783 0.3790 1.3143 40 1 3.6951 -1.1203 2.2708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759683722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = -148.367758 kcal Electronic energy + Delta-G solvation = -21013.889720 eV Core-core repulsion = 17793.033670 eV Total energy + Delta-G solvation = -3220.856051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96986 -40.44790 -38.18855 -37.23644 -35.47483 -33.79259 -32.40215 -31.33622 -28.43310 -27.41619 -25.62771 -24.56285 -22.97258 -22.39743 -21.71093 -20.19108 -18.91702 -18.19801 -17.75501 -17.48026 -17.27284 -16.64330 -16.51388 -16.14165 -15.45835 -15.01144 -14.61475 -14.46281 -14.36598 -14.07497 -13.48459 -13.39489 -13.17591 -13.04040 -13.00021 -12.80924 -12.65363 -12.60631 -12.19932 -12.07319 -12.01350 -11.71774 -11.57049 -11.53396 -11.42523 -11.29086 -11.00150 -10.63514 -10.23322 -8.29276 -6.43181 1.04296 1.39014 1.42924 1.50532 1.66017 2.37901 2.54224 2.80557 3.05004 3.39359 3.49926 3.64017 3.76404 3.90044 3.96055 4.14714 4.19686 4.22277 4.34348 4.39408 4.48375 4.54494 4.63412 4.71840 4.78222 4.82782 4.86062 4.94701 4.99909 5.02544 5.13594 5.22813 5.26313 5.36386 5.41548 5.50328 5.70409 6.03040 6.29635 6.66821 6.71467 7.26868 8.83100 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.004453 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.587938 B = 6286.434018 C = 7049.579162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.046 0.954 4 C -0.099 4.099 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.175 4.175 8 H 0.161 0.839 9 C 0.484 3.516 10 O -0.542 6.542 11 O -0.361 6.361 12 C 0.090 3.910 13 C 0.034 3.966 14 C -0.553 4.553 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.973 3.027 19 H -0.278 1.278 20 H -0.266 1.266 21 H -0.266 1.266 22 C -0.120 4.120 23 C 0.063 3.937 24 O -0.393 6.393 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 -12.555 -11.205 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.064 0.936 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.151 4.151 7 C -0.193 4.193 8 H 0.178 0.822 9 C 0.329 3.671 10 O -0.433 6.433 11 O -0.277 6.277 12 C 0.017 3.983 13 C -0.003 4.003 14 C -0.591 4.591 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.204 1.204 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.158 4.158 23 C -0.014 4.014 24 O -0.312 6.312 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.165 0.835 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.690 -12.632 -11.017 21.023 hybrid contribution 1.493 0.806 0.591 1.797 sum -11.197 -11.826 -10.426 19.337 Atomic orbital electron populations 1.21769 0.91157 1.03446 1.03253 1.22387 0.96308 0.94816 0.84978 0.93574 1.21899 0.89564 1.03266 0.98922 1.21693 0.95215 0.98767 0.94262 1.23296 1.01842 0.92232 0.97736 1.22164 0.94078 0.97003 1.06081 0.82184 1.23388 0.91299 0.75572 0.76852 1.90604 1.34937 1.54289 1.63468 1.86535 1.38012 1.54790 1.48341 1.23157 0.81437 0.98547 0.95153 1.18943 0.97135 0.92311 0.91901 1.21332 0.93617 1.23830 1.20286 0.91773 1.25957 1.00920 0.95350 0.96855 1.70090 1.29535 1.27408 1.29450 0.85385 0.78544 0.78296 0.78145 1.20353 1.19033 1.19044 1.21831 0.98958 1.01586 0.93385 1.22525 0.80942 0.99259 0.98647 1.87821 1.21066 1.77188 1.45143 0.91134 0.92686 0.88799 0.87765 0.88441 0.83518 0.88700 0.92398 0.92426 0.97635 0.97672 0.92281 0.88333 0.93173 0.94649 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.57 71.98 0.69 -1.45 16 2 C 0.07 1.51 3.26 30.70 0.10 1.61 16 3 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 4 C -0.10 -1.55 5.20 30.79 0.16 -1.39 16 5 C -0.10 -2.05 2.03 -52.20 -0.11 -2.16 16 6 C -0.11 -2.09 9.52 30.51 0.29 -1.80 16 7 C -0.17 -4.24 5.98 -11.61 -0.07 -4.31 16 8 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 9 C 0.48 17.20 5.96 71.23 0.42 17.63 16 10 O -0.54 -21.91 16.35 21.99 0.36 -21.55 16 11 O -0.36 -14.92 10.12 -51.46 -0.52 -15.44 16 12 C 0.09 4.18 5.40 71.98 0.39 4.56 16 13 C 0.03 1.87 5.35 29.85 0.16 2.03 16 14 C -0.55 -31.74 9.11 25.60 0.23 -31.50 16 15 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 18 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.12 -2.97 5.58 30.79 0.17 -2.80 16 23 C 0.06 1.77 6.85 72.09 0.49 2.27 16 24 O -0.39 -10.50 10.33 -148.98 -1.54 -12.04 16 25 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.11 8.08 -2.39 -0.02 1.09 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 2.02 7.93 -2.38 -0.02 2.00 16 32 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 33 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.47 6.83 -2.39 -0.02 1.45 16 39 H 0.04 1.19 8.04 -2.38 -0.02 1.17 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -69.27 332.98 5.01 -64.26 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.00 Total: 10.81 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 3.40 Total: -16.36 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -1.70 Total: -49.02 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.27 5.01 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759683722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.112 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds