Wall clock time and date at job start Mon Mar 30 2020 07:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.50695 * 109.47393 * 239.99938 * 2 1 3 5 5 H 1.08005 * 119.99735 * 241.35920 * 4 2 1 6 6 C 1.37871 * 120.00260 * 61.35884 * 4 2 1 7 7 N 1.31509 * 120.00223 * 193.96437 * 6 4 2 8 8 Si 1.86804 * 119.99827 * 13.96619 * 6 4 2 9 9 H 1.48497 * 109.47386 * 84.55844 * 8 6 4 10 10 H 1.48501 * 109.46872 * 204.55735 * 8 6 4 11 11 H 1.48496 * 109.47084 * 324.55384 * 8 6 4 12 12 C 1.53004 * 109.47017 * 119.99280 * 2 1 3 13 13 O 1.45194 * 109.47533 * 300.00137 * 12 2 1 14 14 C 1.34228 * 117.00320 * 179.97438 * 13 12 2 15 15 O 1.20831 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00167 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.67389 * 56.76353 * 16 14 13 18 18 C 1.54888 * 110.75381 * 293.32477 * 16 14 13 19 19 C 1.54270 * 104.19596 * 203.74493 * 18 16 14 20 20 C 1.53874 * 106.59745 * 23.61230 * 19 18 16 21 21 C 1.52999 * 110.02899 * 240.71581 * 20 19 18 22 22 C 1.52993 * 110.07493 * 119.30980 * 20 19 18 23 23 C 1.54264 * 106.59841 * 359.97438 * 20 19 18 24 24 H 1.09007 * 109.47182 * 309.31926 * 1 2 3 25 25 H 1.09006 * 109.46879 * 69.31598 * 1 2 3 26 26 H 1.08994 * 109.47028 * 189.32032 * 1 2 3 27 27 H 1.09000 * 109.47264 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46901 * 299.99832 * 3 2 1 29 29 H 1.08996 * 109.47512 * 59.99618 * 3 2 1 30 30 H 0.97005 * 120.00281 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47095 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46448 * 60.00418 * 12 2 1 33 33 H 1.08997 * 110.48511 * 322.41979 * 18 16 14 34 34 H 1.08998 * 110.48667 * 85.06498 * 18 16 14 35 35 H 1.08999 * 110.03150 * 264.32800 * 19 18 16 36 36 H 1.08997 * 110.07304 * 142.91676 * 19 18 16 37 37 H 1.08998 * 109.47405 * 177.16734 * 21 20 19 38 38 H 1.09004 * 109.47427 * 297.16815 * 21 20 19 39 39 H 1.09007 * 109.47594 * 57.16727 * 21 20 19 40 40 H 1.09006 * 109.47106 * 302.80558 * 22 20 19 41 41 H 1.08999 * 109.47446 * 62.80285 * 22 20 19 42 42 H 1.09002 * 109.47107 * 182.80969 * 22 20 19 43 43 H 1.09004 * 110.48644 * 217.71202 * 23 20 19 44 44 H 1.08999 * 110.48736 * 95.07283 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7226 -0.2233 -2.4825 7 7 1.9163 -0.9723 -3.5459 8 14 1.0279 1.5007 -2.6683 9 1 2.1419 2.4818 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7211 1.2494 13 8 1.5560 -0.0366 2.4348 14 6 1.9162 -0.5468 3.6230 15 8 2.6125 -1.5332 3.6708 16 6 1.4512 0.1097 4.8972 17 1 0.3633 0.1709 4.9238 18 6 2.0879 1.5128 5.0557 19 6 2.0431 1.7792 6.5745 20 6 1.9800 0.4033 7.2605 21 6 0.6933 0.2847 8.0797 22 6 3.1975 0.2122 8.1671 23 6 1.9881 -0.6512 6.1346 24 1 -0.3634 0.6512 0.7951 25 1 -0.3633 0.3630 -0.9615 26 1 -0.3633 -1.0140 0.1664 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9565 0.8899 30 1 1.6988 -0.6295 -4.4269 31 1 3.1300 -0.7215 1.2492 32 1 1.6766 -1.7488 1.2493 33 1 3.1182 1.5066 4.6998 34 1 1.5027 2.2600 4.5198 35 1 1.1570 2.3624 6.8253 36 1 2.9411 2.3117 6.8876 37 1 0.6336 -0.7104 8.5205 38 1 0.6966 1.0333 8.8720 39 1 -0.1672 0.4466 7.4304 40 1 4.1090 0.3229 7.5795 41 1 3.1823 0.9614 8.9586 42 1 3.1688 -0.7839 8.6088 43 1 1.3303 -1.4831 6.3863 44 1 3.0021 -1.0071 5.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764825683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:33 Heat of formation + Delta-G solvation = -104.365705 kcal Electronic energy + Delta-G solvation = -21458.072006 eV Core-core repulsion = 18374.957122 eV Total energy + Delta-G solvation = -3083.114884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42502 -38.76887 -36.74709 -35.02570 -32.63825 -31.70777 -29.19567 -27.53777 -26.67292 -26.25841 -25.13467 -24.64936 -22.30062 -19.92823 -19.13441 -18.92096 -17.37792 -16.16143 -15.93318 -15.90285 -15.37643 -15.13380 -14.20091 -14.04799 -13.64160 -13.51932 -13.24395 -13.14269 -12.86524 -12.46573 -12.26446 -12.08228 -11.93074 -11.77593 -11.72273 -11.54832 -11.26590 -10.88266 -10.77749 -10.73605 -10.67091 -10.42406 -10.34019 -10.24629 -10.06369 -9.90303 -9.72096 -9.09803 -8.64707 -8.46657 -6.15974 -4.14185 2.56260 3.15589 3.27217 3.35717 3.40531 4.27028 4.34042 4.36709 4.55296 4.94769 5.03669 5.09001 5.15879 5.21753 5.29097 5.35397 5.40490 5.43658 5.56357 5.65418 5.75015 5.78546 5.80220 5.86930 5.89178 5.91876 6.02294 6.11822 6.15547 6.16748 6.24475 6.30177 6.53875 6.58980 6.71383 6.78601 6.89001 7.08498 7.22886 7.44973 7.70966 8.20645 8.42219 8.86593 9.47632 10.96826 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040446 B = 0.004058 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.107908 B = 6898.483669 C = 7165.003635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 C -0.145 4.145 4 C -0.519 4.519 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.246 1.246 12 C 0.092 3.908 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.516 6.516 16 C -0.089 4.089 17 H 0.109 0.891 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.100 4.100 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 6.006 21.730 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 C -0.202 4.202 4 C -0.556 4.556 5 H 0.093 0.907 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.020 3.980 13 O -0.269 6.269 14 C 0.304 3.696 15 O -0.406 6.406 16 C -0.108 4.108 17 H 0.127 0.873 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.072 4.072 21 C -0.196 4.196 22 C -0.196 4.196 23 C -0.137 4.137 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.798 5.677 21.492 22.301 hybrid contribution -0.192 0.706 -0.453 0.861 sum -1.990 6.383 21.039 22.076 Atomic orbital electron populations 1.22218 0.97408 0.99839 1.00168 1.18580 0.93117 0.92577 0.91523 1.22280 1.00633 0.98166 0.99106 1.20675 1.34511 1.12442 0.88020 0.90662 1.24912 0.94518 0.97442 0.95593 1.69944 1.48057 1.35967 0.98737 0.87284 0.79533 0.85344 0.76104 1.21241 1.23324 1.17195 1.23387 0.98556 0.95732 0.80358 1.86486 1.69300 1.55990 1.15079 1.23446 0.77592 0.82427 0.86152 1.90629 1.35895 1.25800 1.88239 1.21990 1.02380 0.96732 0.89692 0.87315 1.22299 1.01415 0.94529 0.96561 1.22300 1.02296 0.96338 0.94311 1.21191 0.95831 0.94969 0.95181 1.21933 0.96591 1.01621 0.99499 1.21905 0.97094 1.01556 0.99039 1.22440 1.02775 0.96941 0.91543 0.94942 0.92738 0.93848 0.93245 0.94218 0.94084 0.92464 0.91922 0.91814 0.91048 0.90218 0.91286 0.91306 0.92638 0.92692 0.92430 0.92439 0.92703 0.92624 0.90960 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 7.58 37.16 0.28 -2.77 16 2 C 0.04 1.00 0.58 -155.66 -0.09 0.91 16 3 C -0.15 -3.16 7.55 37.16 0.28 -2.88 16 4 C -0.52 -14.34 8.62 -34.44 -0.30 -14.64 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.08 2.22 5.32 -17.82 -0.09 2.12 16 7 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.88 21.58 22.79 -169.99 -3.87 17.71 16 9 H -0.28 -6.88 7.10 56.52 0.40 -6.48 16 10 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 11 H -0.25 -5.56 4.65 56.52 0.26 -5.29 16 12 C 0.09 1.97 4.25 37.16 0.16 2.13 16 13 O -0.35 -6.58 9.06 -39.25 -0.36 -6.94 16 14 C 0.46 7.75 7.26 36.00 0.26 8.01 16 15 O -0.52 -10.08 15.47 -18.75 -0.29 -10.37 16 16 C -0.09 -1.08 3.40 -89.79 -0.31 -1.38 16 17 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.11 -1.16 6.26 -25.07 -0.16 -1.32 16 19 C -0.11 -0.97 6.11 -25.61 -0.16 -1.12 16 20 C -0.07 -0.61 0.94 -153.40 -0.14 -0.76 16 21 C -0.14 -1.03 8.14 37.16 0.30 -0.72 16 22 C -0.14 -1.09 8.16 37.15 0.30 -0.78 16 23 C -0.10 -1.08 4.98 -25.09 -0.12 -1.21 16 24 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 25 H 0.05 1.24 4.30 -51.93 -0.22 1.02 16 26 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 29 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 33 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 36 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 44 H 0.08 1.03 7.15 -51.93 -0.37 0.66 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -30.42 333.80 -6.41 -36.83 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.91 Total: -1.70 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.22 Total: -14.42 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.65 Total: -17.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.87 Total: 17.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.42 -6.41 -36.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764825683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.539 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds