Wall clock time and date at job start Mon Mar 30 2020 07:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.50695 * 109.47393 * 239.99938 * 2 1 3 5 5 H 1.08005 * 119.99735 * 241.35920 * 4 2 1 6 6 C 1.37871 * 120.00260 * 61.35884 * 4 2 1 7 7 N 1.31509 * 120.00223 * 193.96437 * 6 4 2 8 8 Si 1.86804 * 119.99827 * 13.96619 * 6 4 2 9 9 H 1.48497 * 109.47386 * 84.55844 * 8 6 4 10 10 H 1.48501 * 109.46872 * 204.55735 * 8 6 4 11 11 H 1.48496 * 109.47084 * 324.55384 * 8 6 4 12 12 C 1.53004 * 109.47017 * 119.99280 * 2 1 3 13 13 O 1.45194 * 109.47533 * 300.00137 * 12 2 1 14 14 C 1.34228 * 117.00320 * 179.97438 * 13 12 2 15 15 O 1.20831 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00167 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.67389 * 56.76353 * 16 14 13 18 18 C 1.54888 * 110.75381 * 293.32477 * 16 14 13 19 19 C 1.54270 * 104.19596 * 203.74493 * 18 16 14 20 20 C 1.53874 * 106.59745 * 23.61230 * 19 18 16 21 21 C 1.52999 * 110.02899 * 240.71581 * 20 19 18 22 22 C 1.52993 * 110.07493 * 119.30980 * 20 19 18 23 23 C 1.54264 * 106.59841 * 359.97438 * 20 19 18 24 24 H 1.09007 * 109.47182 * 309.31926 * 1 2 3 25 25 H 1.09006 * 109.46879 * 69.31598 * 1 2 3 26 26 H 1.08994 * 109.47028 * 189.32032 * 1 2 3 27 27 H 1.09000 * 109.47264 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46901 * 299.99832 * 3 2 1 29 29 H 1.08996 * 109.47512 * 59.99618 * 3 2 1 30 30 H 0.97005 * 120.00281 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47095 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46448 * 60.00418 * 12 2 1 33 33 H 1.08997 * 110.48511 * 322.41979 * 18 16 14 34 34 H 1.08998 * 110.48667 * 85.06498 * 18 16 14 35 35 H 1.08999 * 110.03150 * 264.32800 * 19 18 16 36 36 H 1.08997 * 110.07304 * 142.91676 * 19 18 16 37 37 H 1.08998 * 109.47405 * 177.16734 * 21 20 19 38 38 H 1.09004 * 109.47427 * 297.16815 * 21 20 19 39 39 H 1.09007 * 109.47594 * 57.16727 * 21 20 19 40 40 H 1.09006 * 109.47106 * 302.80558 * 22 20 19 41 41 H 1.08999 * 109.47446 * 62.80285 * 22 20 19 42 42 H 1.09002 * 109.47107 * 182.80969 * 22 20 19 43 43 H 1.09004 * 110.48644 * 217.71202 * 23 20 19 44 44 H 1.08999 * 110.48736 * 95.07283 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7226 -0.2233 -2.4825 7 7 1.9163 -0.9723 -3.5459 8 14 1.0279 1.5007 -2.6683 9 1 2.1419 2.4818 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7211 1.2494 13 8 1.5560 -0.0366 2.4348 14 6 1.9162 -0.5468 3.6230 15 8 2.6125 -1.5332 3.6708 16 6 1.4512 0.1097 4.8972 17 1 0.3633 0.1709 4.9238 18 6 2.0879 1.5128 5.0557 19 6 2.0431 1.7792 6.5745 20 6 1.9800 0.4033 7.2605 21 6 0.6933 0.2847 8.0797 22 6 3.1975 0.2122 8.1671 23 6 1.9881 -0.6512 6.1346 24 1 -0.3634 0.6512 0.7951 25 1 -0.3633 0.3630 -0.9615 26 1 -0.3633 -1.0140 0.1664 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9565 0.8899 30 1 1.6988 -0.6295 -4.4269 31 1 3.1300 -0.7215 1.2492 32 1 1.6766 -1.7488 1.2493 33 1 3.1182 1.5066 4.6998 34 1 1.5027 2.2600 4.5198 35 1 1.1570 2.3624 6.8253 36 1 2.9411 2.3117 6.8876 37 1 0.6336 -0.7104 8.5205 38 1 0.6966 1.0333 8.8720 39 1 -0.1672 0.4466 7.4304 40 1 4.1090 0.3229 7.5795 41 1 3.1823 0.9614 8.9586 42 1 3.1688 -0.7839 8.6088 43 1 1.3303 -1.4831 6.3863 44 1 3.0021 -1.0071 5.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764825683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:33 Heat of formation + Delta-G solvation = -121.143155 kcal Electronic energy + Delta-G solvation = -21458.799530 eV Core-core repulsion = 18374.957122 eV Total energy + Delta-G solvation = -3083.842409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72916 -39.77214 -38.37688 -36.71167 -33.90201 -33.39686 -30.02833 -28.25019 -28.10226 -27.98160 -27.06763 -25.83716 -23.35188 -21.19963 -20.92661 -19.66960 -18.70510 -18.00702 -17.51260 -17.33875 -17.07019 -16.21479 -15.34339 -15.06879 -14.84730 -14.67922 -14.55631 -14.36934 -14.13107 -14.07464 -13.76993 -13.68384 -13.30700 -12.95349 -12.67723 -12.45012 -12.37411 -12.28747 -12.06045 -12.00758 -11.87815 -11.66635 -11.48935 -11.44988 -11.39668 -11.38661 -11.25270 -11.06953 -10.64308 -10.42475 -8.35087 -6.38101 1.20615 1.35967 1.37343 1.49941 1.77152 2.32056 3.00964 3.41854 3.50303 3.74709 4.01892 4.06780 4.10979 4.26805 4.31271 4.33375 4.38462 4.50231 4.57569 4.59788 4.62919 4.78708 4.82382 4.86031 4.89735 4.93168 5.02378 5.03568 5.08922 5.12312 5.15699 5.17201 5.22476 5.32931 5.41655 5.42676 5.46382 5.56843 5.60593 5.65888 5.72237 6.23483 6.64666 6.77427 7.27371 8.81726 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040446 B = 0.004058 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.107908 B = 6898.483669 C = 7165.003635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.038 3.962 3 C -0.143 4.143 4 C -0.526 4.526 5 H 0.030 0.970 6 C 0.023 3.977 7 N -0.942 5.942 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.309 1.309 11 H -0.209 1.209 12 C 0.104 3.896 13 O -0.347 6.347 14 C 0.457 3.543 15 O -0.549 6.549 16 C -0.084 4.084 17 H 0.132 0.868 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.100 4.100 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.267 0.733 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 8.829 24.309 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 C -0.200 4.200 4 C -0.563 4.563 5 H 0.048 0.952 6 C -0.175 4.175 7 N -0.581 5.581 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.239 1.239 11 H -0.133 1.133 12 C 0.030 3.970 13 O -0.263 6.263 14 C 0.303 3.697 15 O -0.440 6.440 16 C -0.103 4.103 17 H 0.150 0.850 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.067 4.067 21 C -0.195 4.195 22 C -0.196 4.196 23 C -0.138 4.138 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.454 8.506 24.113 25.801 hybrid contribution 0.406 -0.322 -1.196 1.303 sum -3.048 8.184 22.917 24.525 Atomic orbital electron populations 1.22149 0.95882 1.00499 1.00819 1.18526 0.94240 0.93397 0.90094 1.22221 1.00625 0.96739 1.00368 1.20940 1.33639 1.11347 0.90412 0.95191 1.25782 0.95099 1.01636 0.95006 1.70088 1.50250 1.38260 0.99460 0.86334 0.79623 0.79873 0.77013 1.20512 1.23857 1.13294 1.22936 0.97631 0.94974 0.81435 1.86475 1.69288 1.55623 1.14942 1.24521 0.76625 0.81997 0.86607 1.90623 1.37441 1.27458 1.88473 1.22207 1.03699 0.97448 0.86919 0.85003 1.22344 1.00534 0.93441 0.98430 1.22296 1.03604 0.96356 0.92379 1.21176 0.96902 0.94129 0.94523 1.21926 0.95722 1.02153 0.99692 1.21910 0.96415 1.02094 0.99208 1.22468 1.01385 0.97836 0.92097 0.91822 0.93468 0.94206 0.93550 0.94550 0.90913 0.92377 0.93228 0.93395 0.92489 0.89184 0.89482 0.90528 0.92644 0.91365 0.92090 0.93355 0.91168 0.92692 0.90774 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 7.58 71.98 0.55 -5.12 16 2 C 0.04 1.74 0.58 -52.93 -0.03 1.71 16 3 C -0.14 -5.84 7.55 71.98 0.54 -5.29 16 4 C -0.53 -29.85 8.62 25.60 0.22 -29.63 16 5 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 6 C 0.02 1.32 5.32 84.65 0.45 1.77 16 7 N -0.94 -58.78 13.96 21.44 0.30 -58.48 16 8 Si 0.94 43.65 22.79 68.60 1.56 45.21 16 9 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 10 H -0.31 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.21 -8.44 4.65 99.48 0.46 -7.98 16 12 C 0.10 4.46 4.25 71.98 0.31 4.76 16 13 O -0.35 -12.42 9.06 -51.40 -0.47 -12.88 16 14 C 0.46 14.97 7.26 71.23 0.52 15.49 16 15 O -0.55 -21.75 15.47 21.95 0.34 -21.41 16 16 C -0.08 -1.84 3.40 -10.26 -0.03 -1.88 16 17 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 18 C -0.11 -2.01 6.26 31.67 0.20 -1.81 16 19 C -0.11 -1.46 6.11 31.32 0.19 -1.26 16 20 C -0.07 -0.97 0.94 -51.46 -0.05 -1.02 16 21 C -0.14 -1.56 8.14 71.98 0.59 -0.98 16 22 C -0.14 -1.89 8.16 71.98 0.59 -1.30 16 23 C -0.10 -2.04 4.98 31.66 0.16 -1.88 16 24 H 0.06 2.24 7.94 -2.38 -0.02 2.22 16 25 H 0.05 2.01 4.30 -2.38 -0.01 2.00 16 26 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.51 2.25 -2.39 -0.01 1.51 16 29 H 0.07 2.51 7.68 -2.39 -0.02 2.49 16 30 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 33 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 0.90 7.67 -2.39 -0.02 0.88 16 36 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 1.45 7.84 -2.38 -0.02 1.44 16 44 H 0.06 1.49 7.15 -2.39 -0.02 1.48 16 Total: -1.00 -67.71 333.80 6.63 -61.07 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.70 Total: 12.93 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 4.19 Total: -26.44 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.13 Total: -34.29 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.56 Total: 45.21 kcal Total: -67.71 6.63 -61.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764825683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.068 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds