Wall clock time and date at job start Mon Mar 30 2020 07:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 O 1.45194 * 109.47297 * 59.99521 * 12 2 1 14 14 C 1.34226 * 117.00260 * 180.02562 * 13 12 2 15 15 O 1.20832 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00481 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.67207 * 298.21640 * 16 14 13 18 18 C 1.54891 * 110.75941 * 61.44933 * 16 14 13 19 19 C 1.54258 * 104.19771 * 156.25829 * 18 16 14 20 20 C 1.53880 * 106.60176 * 336.39561 * 19 18 16 21 21 C 1.52994 * 110.03354 * 119.28204 * 20 19 18 22 22 C 1.52998 * 110.02754 * 240.66604 * 20 19 18 23 23 C 1.54260 * 106.59327 * 359.97438 * 20 19 18 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 1.09003 * 110.48668 * 274.94222 * 18 16 14 34 34 H 1.09006 * 110.48224 * 37.57887 * 18 16 14 35 35 H 1.09003 * 110.03449 * 95.67651 * 19 18 16 36 36 H 1.09003 * 110.03420 * 217.05328 * 19 18 16 37 37 H 1.09004 * 109.47532 * 61.45406 * 21 20 19 38 38 H 1.08999 * 109.46877 * 181.45539 * 21 20 19 39 39 H 1.08998 * 109.47140 * 301.45282 * 21 20 19 40 40 H 1.08992 * 109.47526 * 58.54497 * 22 20 19 41 41 H 1.09006 * 109.47084 * 178.54346 * 22 20 19 42 42 H 1.08999 * 109.47262 * 298.53807 * 22 20 19 43 43 H 1.09003 * 110.49099 * 264.93442 * 23 20 19 44 44 H 1.09004 * 110.48383 * 142.29017 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.1365 -2.2942 3.6036 10 1 3.1332 -0.1973 4.8220 11 1 1.1526 -1.5964 4.8103 12 6 2.0400 -0.7211 -1.2493 13 8 1.5560 -0.0367 -2.4348 14 6 1.9162 -0.5469 -3.6229 15 8 2.6126 -1.5332 -3.6708 16 6 1.4521 0.1102 -4.8972 17 1 0.3644 0.0928 -4.9651 18 6 1.9848 1.5616 -4.9919 19 6 1.9786 1.8689 -6.5036 20 6 2.0481 0.5132 -7.2282 21 6 0.8072 0.3219 -8.1024 22 6 3.3111 0.4432 -8.0889 23 6 2.0947 -0.5706 -6.1314 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 1.3234 2.2461 -4.4607 34 1 2.9978 1.6229 -4.5942 35 1 1.0608 2.3906 -6.7749 36 1 2.8446 2.4775 -6.7644 37 1 0.7707 1.1064 -8.8583 38 1 0.8534 -0.6514 -8.5908 39 1 -0.0867 0.3745 -7.4808 40 1 4.1890 0.5816 -7.4580 41 1 3.3644 -0.5298 -8.5774 42 1 3.2795 1.2279 -8.8448 43 1 3.1255 -0.8535 -5.9181 44 1 1.5131 -1.4423 -6.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764825693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:37 Heat of formation + Delta-G solvation = -124.554061 kcal Electronic energy + Delta-G solvation = -21376.876122 eV Core-core repulsion = 18292.885805 eV Total energy + Delta-G solvation = -3083.990317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30619 -38.65513 -36.46485 -34.79286 -32.57024 -31.21254 -29.09654 -27.48994 -26.17716 -25.60427 -25.26476 -24.49947 -22.17759 -19.85471 -18.89964 -18.77448 -17.22433 -16.03645 -15.90880 -15.67355 -15.15821 -14.74406 -14.03569 -13.97915 -13.55220 -13.44730 -13.08438 -12.93329 -12.71465 -12.24858 -11.96896 -11.66853 -11.61235 -11.42927 -11.24615 -11.09058 -10.96220 -10.82118 -10.71070 -10.66629 -10.66409 -10.56924 -10.40114 -10.19199 -9.90629 -9.85999 -9.38629 -9.27289 -8.73387 -8.37179 -6.01208 -4.12659 2.67494 3.27117 3.27384 3.35762 3.41536 4.33918 4.37672 4.43611 4.62638 5.01500 5.11035 5.17544 5.25211 5.29106 5.35814 5.43923 5.49203 5.51800 5.61627 5.72745 5.81253 5.84386 5.92818 5.98936 6.07672 6.13090 6.13343 6.20965 6.23732 6.30525 6.49707 6.77392 6.99948 7.11704 7.15681 7.18983 7.42642 7.63718 7.71086 8.06382 8.17359 8.31961 8.41776 8.87599 9.52878 11.00004 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.043840 B = 0.003765 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.528152 B = 7435.101790 C = 7630.500621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.128 4.128 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.084 3.916 13 O -0.347 6.347 14 C 0.459 3.541 15 O -0.522 6.522 16 C -0.089 4.089 17 H 0.109 0.891 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.098 4.098 24 H 0.084 0.916 25 H 0.016 0.984 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 2.400 -18.457 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.186 4.186 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.011 3.989 13 O -0.262 6.262 14 C 0.303 3.697 15 O -0.411 6.411 16 C -0.108 4.108 17 H 0.127 0.873 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.072 4.072 21 C -0.196 4.196 22 C -0.196 4.196 23 C -0.135 4.135 24 H 0.103 0.897 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.185 2.225 -18.271 18.407 hybrid contribution 0.392 -0.688 0.979 1.259 sum 0.577 1.536 -17.292 17.370 Atomic orbital electron populations 1.21763 0.97344 0.98894 1.00655 1.18246 0.93407 0.93085 0.88352 1.21754 0.98015 0.98184 1.00626 1.20990 1.31767 1.12318 0.89855 0.92492 1.24856 0.94806 0.94932 0.98778 1.69839 1.36369 1.22681 1.23156 0.86493 0.78636 0.79729 0.82893 1.19780 1.20957 1.20968 1.23644 0.98100 0.95748 0.81433 1.86526 1.69004 1.55768 1.14924 1.23470 0.77528 0.82374 0.86374 1.90609 1.36172 1.25999 1.88366 1.21993 1.02313 0.96687 0.89788 0.87295 1.22299 1.02021 0.93956 0.96534 1.22304 1.02252 0.96374 0.94334 1.21196 0.95786 0.95047 0.95190 1.21925 0.97019 1.01468 0.99192 1.21904 0.96767 1.01568 0.99324 1.22421 1.02132 0.97106 0.91878 0.89738 0.96462 0.95910 0.95902 0.96432 0.89809 0.92983 0.92690 0.92699 0.90122 0.91081 0.91305 0.91351 0.92699 0.92692 0.92417 0.92459 0.92685 0.92714 0.90116 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 3 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 4 C -0.51 -13.82 8.01 -34.44 -0.28 -14.09 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 8 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.90 4.26 37.16 0.16 2.06 16 13 O -0.35 -7.04 8.86 -39.25 -0.35 -7.39 16 14 C 0.46 8.28 7.26 36.00 0.26 8.54 16 15 O -0.52 -10.69 15.54 -18.76 -0.29 -10.98 16 16 C -0.09 -1.16 3.40 -89.77 -0.31 -1.47 16 17 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.11 -1.28 6.25 -25.08 -0.16 -1.44 16 19 C -0.12 -1.06 6.11 -25.61 -0.16 -1.22 16 20 C -0.07 -0.66 0.94 -153.39 -0.14 -0.81 16 21 C -0.14 -1.10 8.14 37.15 0.30 -0.80 16 22 C -0.14 -1.16 8.16 37.16 0.30 -0.85 16 23 C -0.10 -1.14 4.93 -25.06 -0.12 -1.26 16 24 H 0.08 2.22 6.06 -51.93 -0.31 1.90 16 25 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.08 2.20 6.08 -51.93 -0.32 1.88 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 35 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 36 H 0.07 0.58 7.67 -51.93 -0.40 0.19 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 1.06 7.24 -51.93 -0.38 0.69 16 44 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -28.57 343.72 -7.72 -36.28 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.04 Total: -1.84 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 0.28 Total: -13.63 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.52 Total: -23.56 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.64 Total: -18.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.57 -7.72 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764825693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.269 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds