Wall clock time and date at job start Mon Mar 30 2020 07:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 O 1.45194 * 109.47297 * 59.99521 * 12 2 1 14 14 C 1.34226 * 117.00260 * 180.02562 * 13 12 2 15 15 O 1.20832 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00481 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.67207 * 298.21640 * 16 14 13 18 18 C 1.54891 * 110.75941 * 61.44933 * 16 14 13 19 19 C 1.54258 * 104.19771 * 156.25829 * 18 16 14 20 20 C 1.53880 * 106.60176 * 336.39561 * 19 18 16 21 21 C 1.52994 * 110.03354 * 119.28204 * 20 19 18 22 22 C 1.52998 * 110.02754 * 240.66604 * 20 19 18 23 23 C 1.54260 * 106.59327 * 359.97438 * 20 19 18 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 1.09003 * 110.48668 * 274.94222 * 18 16 14 34 34 H 1.09006 * 110.48224 * 37.57887 * 18 16 14 35 35 H 1.09003 * 110.03449 * 95.67651 * 19 18 16 36 36 H 1.09003 * 110.03420 * 217.05328 * 19 18 16 37 37 H 1.09004 * 109.47532 * 61.45406 * 21 20 19 38 38 H 1.08999 * 109.46877 * 181.45539 * 21 20 19 39 39 H 1.08998 * 109.47140 * 301.45282 * 21 20 19 40 40 H 1.08992 * 109.47526 * 58.54497 * 22 20 19 41 41 H 1.09006 * 109.47084 * 178.54346 * 22 20 19 42 42 H 1.08999 * 109.47262 * 298.53807 * 22 20 19 43 43 H 1.09003 * 110.49099 * 264.93442 * 23 20 19 44 44 H 1.09004 * 110.48383 * 142.29017 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.1365 -2.2942 3.6036 10 1 3.1332 -0.1973 4.8220 11 1 1.1526 -1.5964 4.8103 12 6 2.0400 -0.7211 -1.2493 13 8 1.5560 -0.0367 -2.4348 14 6 1.9162 -0.5469 -3.6229 15 8 2.6126 -1.5332 -3.6708 16 6 1.4521 0.1102 -4.8972 17 1 0.3644 0.0928 -4.9651 18 6 1.9848 1.5616 -4.9919 19 6 1.9786 1.8689 -6.5036 20 6 2.0481 0.5132 -7.2282 21 6 0.8072 0.3219 -8.1024 22 6 3.3111 0.4432 -8.0889 23 6 2.0947 -0.5706 -6.1314 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 1.3234 2.2461 -4.4607 34 1 2.9978 1.6229 -4.5942 35 1 1.0608 2.3906 -6.7749 36 1 2.8446 2.4775 -6.7644 37 1 0.7707 1.1064 -8.8583 38 1 0.8534 -0.6514 -8.5908 39 1 -0.0867 0.3745 -7.4808 40 1 4.1890 0.5816 -7.4580 41 1 3.3644 -0.5298 -8.5774 42 1 3.2795 1.2279 -8.8448 43 1 3.1255 -0.8535 -5.9181 44 1 1.5131 -1.4423 -6.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764825693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:36 Heat of formation + Delta-G solvation = -137.043701 kcal Electronic energy + Delta-G solvation = -21377.417713 eV Core-core repulsion = 18292.885805 eV Total energy + Delta-G solvation = -3084.531908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69246 -39.72983 -38.17976 -36.60333 -33.57916 -33.12440 -30.00797 -28.10734 -27.79572 -27.58417 -27.22341 -25.72993 -23.32069 -21.19259 -20.69604 -19.66726 -18.62960 -17.79300 -17.52875 -17.24904 -16.61499 -16.20783 -15.19022 -14.94348 -14.83977 -14.57423 -14.44111 -14.24824 -14.07506 -13.63095 -13.33326 -13.19255 -12.92014 -12.85306 -12.64367 -12.61676 -12.37368 -12.34291 -12.15433 -12.13013 -11.74553 -11.66423 -11.54577 -11.45859 -11.39860 -11.28978 -11.27864 -11.11172 -10.73973 -10.41842 -8.05862 -6.24106 1.21723 1.41084 1.43951 1.53905 1.83923 2.44650 3.17376 3.41871 3.51542 3.75835 4.08207 4.23198 4.26019 4.27556 4.31670 4.34918 4.49119 4.58528 4.58827 4.62449 4.84247 4.86363 4.89881 5.01972 5.03473 5.03593 5.13213 5.16858 5.19114 5.21762 5.21975 5.32165 5.36099 5.41850 5.46442 5.59446 5.60597 5.62657 5.67635 6.06508 6.16624 6.36028 6.76199 6.83708 7.43989 8.93949 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.043840 B = 0.003765 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.528152 B = 7435.101790 C = 7630.500621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.116 4.116 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.096 3.904 13 O -0.350 6.350 14 C 0.455 3.545 15 O -0.550 6.550 16 C -0.085 4.085 17 H 0.130 0.870 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.097 4.097 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 3.023 -19.943 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.174 4.174 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.022 3.978 13 O -0.266 6.266 14 C 0.301 3.699 15 O -0.441 6.441 16 C -0.104 4.104 17 H 0.148 0.852 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.067 4.067 21 C -0.194 4.194 22 C -0.195 4.195 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.290 2.855 -19.773 19.980 hybrid contribution 0.550 -0.893 1.402 1.751 sum 0.260 1.963 -18.371 18.478 Atomic orbital electron populations 1.21610 0.97012 0.98533 1.00370 1.18274 0.93688 0.93325 0.88695 1.21597 0.97634 0.97842 1.00335 1.21232 1.32275 1.12524 0.91280 0.93458 1.25503 0.94929 0.95584 1.01133 1.69940 1.36624 1.23301 1.23812 0.85592 0.78182 0.78659 0.79696 1.19851 1.20439 1.20454 1.23222 0.97320 0.95130 0.82105 1.86524 1.69196 1.55739 1.15143 1.24527 0.76645 0.82010 0.86752 1.90595 1.37510 1.27432 1.88569 1.22213 1.03514 0.97413 0.87238 0.85224 1.22333 1.01094 0.92786 0.98617 1.22299 1.03607 0.96575 0.92115 1.21181 0.97011 0.93914 0.94634 1.21918 0.96092 1.02187 0.99250 1.21905 0.95931 1.02310 0.99399 1.22449 1.00735 0.98172 0.92112 0.91724 0.94837 0.96258 0.96280 0.94796 0.91811 0.92791 0.93636 0.93584 0.89747 0.92578 0.89584 0.90446 0.91290 0.92470 0.92280 0.93373 0.92517 0.91125 0.92177 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.11 71.98 0.58 -5.13 16 2 C 0.06 3.02 0.58 -52.93 -0.03 2.99 16 3 C -0.12 -5.65 8.11 71.98 0.58 -5.06 16 4 C -0.54 -29.23 8.01 25.60 0.21 -29.02 16 5 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -49.12 9.35 21.45 0.20 -48.92 16 8 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.10 4.40 4.26 71.98 0.31 4.70 16 13 O -0.35 -14.11 8.86 -51.38 -0.46 -14.57 16 14 C 0.46 16.30 7.26 71.24 0.52 16.82 16 15 O -0.55 -22.82 15.54 21.94 0.34 -22.48 16 16 C -0.08 -2.11 3.40 -10.24 -0.03 -2.15 16 17 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 18 C -0.11 -2.39 6.25 31.67 0.20 -2.19 16 19 C -0.11 -1.69 6.11 31.32 0.19 -1.50 16 20 C -0.07 -1.07 0.94 -51.46 -0.05 -1.12 16 21 C -0.14 -1.75 8.14 71.98 0.59 -1.16 16 22 C -0.14 -2.01 8.16 71.98 0.59 -1.43 16 23 C -0.10 -2.14 4.93 31.67 0.16 -1.98 16 24 H 0.06 3.40 6.06 -2.38 -0.01 3.39 16 25 H 0.03 1.46 7.68 -2.38 -0.02 1.44 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 29 H 0.06 3.35 6.08 -2.38 -0.01 3.34 16 30 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 32 H 0.05 2.16 8.13 -2.38 -0.02 2.14 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.37 8.04 -2.38 -0.02 1.35 16 35 H 0.09 1.09 7.67 -2.39 -0.02 1.07 16 36 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.58 7.24 -2.39 -0.02 1.56 16 44 H 0.07 1.59 7.84 -2.38 -0.02 1.57 16 Total: -1.00 -60.66 343.72 7.29 -53.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.94 Total: 11.85 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 4.24 Total: -24.26 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.20 Total: -48.92 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.11 Total: -37.05 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -60.66 7.29 -53.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764825693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.671 kcal (2) G-P(sol) polarization free energy of solvation -60.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds