Wall clock time and date at job start Mon Mar 30 2020 08:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 C 1.53000 * 109.46908 * 177.94932 * 3 2 1 5 5 C 1.50703 * 112.90888 * 293.25426 * 4 3 2 6 6 O 1.20822 * 120.00021 * 125.39386 * 5 4 3 7 7 O 1.34225 * 119.99781 * 305.38580 * 5 4 3 8 8 C 1.45203 * 116.99988 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47128 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47198 * 300.00044 * 9 8 7 11 11 C 1.53001 * 109.47300 * 60.00408 * 9 8 7 12 12 C 1.50702 * 109.46866 * 180.02562 * 9 8 7 13 13 H 1.08000 * 120.00365 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99923 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99912 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00167 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47490 * 89.99330 * 16 14 12 18 18 H 1.48500 * 109.46877 * 209.99949 * 16 14 12 19 19 H 1.48502 * 109.46855 * 329.99366 * 16 14 12 20 20 C 1.53779 * 113.61742 * 64.50912 * 4 3 2 21 21 C 1.53783 * 87.08437 * 89.11157 * 20 4 3 22 22 C 1.53781 * 87.07840 * 25.43471 * 21 20 4 23 23 H 1.08999 * 109.46667 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47069 * 300.00119 * 1 2 3 25 25 H 1.09003 * 109.46457 * 59.99949 * 1 2 3 26 26 H 1.09006 * 109.47506 * 239.99828 * 2 1 3 27 27 H 1.08999 * 109.47095 * 119.99734 * 2 1 3 28 28 H 1.08993 * 109.47296 * 57.95110 * 3 2 1 29 29 H 1.08999 * 109.47191 * 297.94861 * 3 2 1 30 30 H 1.08998 * 109.47264 * 300.00643 * 8 7 5 31 31 H 1.09006 * 109.46641 * 60.00387 * 8 7 5 32 32 H 1.09003 * 109.46736 * 60.00478 * 10 9 8 33 33 H 1.09007 * 109.46740 * 179.97438 * 10 9 8 34 34 H 1.08995 * 109.46896 * 300.00204 * 10 9 8 35 35 H 1.08998 * 109.47046 * 59.99723 * 11 9 8 36 36 H 1.08995 * 109.47334 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.46857 * 299.99901 * 11 9 8 38 38 H 0.97001 * 119.99668 * 180.02562 * 15 14 12 39 39 H 1.08998 * 113.61128 * 334.56542 * 20 4 3 40 40 H 1.09002 * 113.61478 * 203.66544 * 20 4 3 41 41 H 1.09000 * 113.60997 * 139.97980 * 21 20 4 42 42 H 1.08994 * 113.61531 * 270.88503 * 21 20 4 43 43 H 1.09002 * 113.61667 * 89.11380 * 22 21 20 44 44 H 1.09000 * 113.61703 * 219.93275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5691 1.4428 0.0516 5 6 4.1123 0.9101 1.3525 6 8 4.9065 -0.0005 1.3479 7 8 3.7139 1.4473 2.5163 8 6 4.2779 0.8838 3.7298 9 6 3.7095 1.6186 4.9454 10 6 4.0686 3.1033 4.8578 11 6 2.1877 1.4625 4.9701 12 6 4.2954 1.0341 6.2049 13 1 5.0021 0.2197 6.1444 14 6 3.9284 1.5384 7.4345 15 7 3.0674 2.5298 7.5083 16 14 4.6551 0.8144 8.9957 17 1 5.9007 1.5429 9.3461 18 1 3.6761 0.9457 10.1046 19 1 4.9661 -0.6212 8.7774 20 6 4.2276 0.8214 -1.1914 21 6 4.1952 2.2270 -1.8144 22 6 4.1998 2.7778 -0.3787 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8935 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6470 1.9668 0.8710 29 1 1.7070 1.9456 -0.9078 30 1 4.0218 -0.1738 3.7925 31 1 5.3622 0.9946 3.7120 32 1 3.6451 3.5263 3.9468 33 1 3.6632 3.6269 5.7237 34 1 5.1527 3.2144 4.8402 35 1 1.9319 0.4048 5.0326 36 1 1.7828 1.9857 5.8364 37 1 1.7643 1.8855 4.0592 38 1 2.8095 2.8848 8.3734 39 1 3.5933 0.1005 -1.7071 40 1 5.2352 0.4470 -1.0106 41 1 5.0936 2.4746 -2.3799 42 1 3.2771 2.4411 -2.3614 43 1 5.1998 2.9382 0.0243 44 1 3.5441 3.6372 -0.2386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764833050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:15 Heat of formation + Delta-G solvation = -96.540661 kcal Electronic energy + Delta-G solvation = -21819.577527 eV Core-core repulsion = 18736.801963 eV Total energy + Delta-G solvation = -3082.775564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72046 -38.49808 -36.33414 -34.79783 -34.12740 -31.25200 -28.66103 -26.11286 -25.69660 -25.59911 -25.21064 -24.41641 -21.57882 -21.24006 -18.82487 -18.49039 -17.10459 -16.24408 -15.85551 -15.75062 -15.24179 -14.76838 -14.63605 -13.83006 -13.57171 -13.17918 -12.97178 -12.74698 -12.40045 -12.34240 -12.03653 -11.74680 -11.56749 -11.42914 -11.24838 -11.12236 -11.10116 -10.94890 -10.70647 -10.69343 -10.40849 -10.39182 -10.19767 -10.17930 -9.85018 -9.76556 -9.37849 -9.24092 -8.73653 -8.36377 -6.00685 -4.12121 2.67797 3.28306 3.29548 3.35428 3.41256 4.33218 4.38525 4.44106 4.64520 4.68551 5.03843 5.13411 5.15701 5.25659 5.38663 5.52875 5.58881 5.67116 5.71669 5.76272 5.81253 5.88853 5.93063 6.02783 6.10046 6.13684 6.14138 6.26788 6.31796 6.36365 6.50399 6.78209 7.00424 7.12637 7.16240 7.19884 7.43114 7.64209 7.71311 8.06790 8.17937 8.34018 8.42750 8.87810 9.53273 11.00470 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.004746 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.574184 B = 5898.751678 C = 6238.652845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.079 4.079 5 C 0.468 3.532 6 O -0.522 6.522 7 O -0.344 6.344 8 C 0.083 3.917 9 C 0.070 3.930 10 C -0.129 4.129 11 C -0.128 4.128 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.120 4.120 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.083 0.917 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 0.186 -16.525 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.130 4.130 4 C -0.080 4.080 5 C 0.311 3.689 6 O -0.411 6.411 7 O -0.259 6.259 8 C 0.011 3.989 9 C 0.070 3.930 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.133 4.133 15 N -0.520 5.520 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.155 4.155 21 C -0.177 4.177 22 C -0.158 4.158 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.102 0.898 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.641 0.034 -16.318 16.531 hybrid contribution 0.596 -0.587 1.066 1.355 sum -2.045 -0.554 -15.252 15.399 Atomic orbital electron populations 1.21743 0.95484 1.01618 1.01885 1.21543 0.96115 0.96513 1.02248 1.21404 0.90315 0.97800 1.03463 1.21917 0.97386 0.98995 0.89751 1.23334 0.78870 0.80234 0.86445 1.90594 1.33407 1.28823 1.88318 1.86528 1.64930 1.59355 1.15125 1.23637 0.97156 0.97512 0.80635 1.18229 0.93367 0.92703 0.88686 1.21761 0.98231 0.98361 1.00267 1.21750 0.97505 0.98938 1.00363 1.20946 1.25956 1.18130 0.89920 0.92591 1.24852 0.94836 0.94841 0.98798 1.69833 1.32441 1.25245 1.24528 0.86552 0.78875 0.79580 0.82752 1.20646 1.21145 1.19922 1.22965 1.01888 0.96823 0.93806 1.22832 1.02377 0.96344 0.96138 1.22917 1.01513 0.95438 0.95905 0.92821 0.92310 0.92886 0.91880 0.92009 0.89949 0.90717 0.92777 0.92796 0.96451 0.89782 0.95930 0.95931 0.89792 0.96456 0.92938 0.90616 0.88899 0.90976 0.89780 0.89629 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.51 5.64 -26.73 -0.15 -1.66 16 3 C -0.09 -1.09 4.54 -26.73 -0.12 -1.22 16 4 C -0.08 -1.07 0.90 -154.85 -0.14 -1.21 16 5 C 0.47 8.57 6.22 36.01 0.22 8.79 16 6 O -0.52 -10.83 15.70 -18.75 -0.29 -11.12 16 7 O -0.34 -7.04 8.75 -39.24 -0.34 -7.39 16 8 C 0.08 1.90 4.26 37.16 0.16 2.06 16 9 C 0.07 1.75 0.58 -155.66 -0.09 1.66 16 10 C -0.13 -3.13 8.11 37.16 0.30 -2.83 16 11 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 12 C -0.51 -13.83 8.01 -34.44 -0.28 -14.11 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.84 5.15 -17.82 -0.09 1.74 16 15 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.12 -1.35 6.78 -25.92 -0.18 -1.53 16 21 C -0.14 -1.29 7.73 -25.92 -0.20 -1.49 16 22 C -0.12 -1.39 7.21 -25.92 -0.19 -1.57 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.68 6.76 -51.93 -0.35 0.33 16 27 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 28 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 29 H 0.07 0.71 7.31 -51.93 -0.38 0.33 16 30 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 33 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 37 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 38 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.08 0.78 6.70 -51.93 -0.35 0.43 16 40 H 0.09 1.20 7.52 -51.93 -0.39 0.81 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.65 7.61 -51.93 -0.40 0.26 16 43 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 44 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -28.67 344.22 -7.90 -36.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.87 Total: -0.30 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.08 Total: -15.34 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.52 Total: -23.57 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.64 Total: -18.51 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.67 -7.90 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.969 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds