Wall clock time and date at job start Mon Mar 30 2020 08:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 C 1.53000 * 109.46908 * 177.94932 * 3 2 1 5 5 C 1.50703 * 112.90888 * 293.25426 * 4 3 2 6 6 O 1.20822 * 120.00021 * 125.39386 * 5 4 3 7 7 O 1.34225 * 119.99781 * 305.38580 * 5 4 3 8 8 C 1.45203 * 116.99988 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47128 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47198 * 300.00044 * 9 8 7 11 11 C 1.53001 * 109.47300 * 60.00408 * 9 8 7 12 12 C 1.50702 * 109.46866 * 180.02562 * 9 8 7 13 13 H 1.08000 * 120.00365 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99923 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99912 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00167 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47490 * 89.99330 * 16 14 12 18 18 H 1.48500 * 109.46877 * 209.99949 * 16 14 12 19 19 H 1.48502 * 109.46855 * 329.99366 * 16 14 12 20 20 C 1.53779 * 113.61742 * 64.50912 * 4 3 2 21 21 C 1.53783 * 87.08437 * 89.11157 * 20 4 3 22 22 C 1.53781 * 87.07840 * 25.43471 * 21 20 4 23 23 H 1.08999 * 109.46667 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47069 * 300.00119 * 1 2 3 25 25 H 1.09003 * 109.46457 * 59.99949 * 1 2 3 26 26 H 1.09006 * 109.47506 * 239.99828 * 2 1 3 27 27 H 1.08999 * 109.47095 * 119.99734 * 2 1 3 28 28 H 1.08993 * 109.47296 * 57.95110 * 3 2 1 29 29 H 1.08999 * 109.47191 * 297.94861 * 3 2 1 30 30 H 1.08998 * 109.47264 * 300.00643 * 8 7 5 31 31 H 1.09006 * 109.46641 * 60.00387 * 8 7 5 32 32 H 1.09003 * 109.46736 * 60.00478 * 10 9 8 33 33 H 1.09007 * 109.46740 * 179.97438 * 10 9 8 34 34 H 1.08995 * 109.46896 * 300.00204 * 10 9 8 35 35 H 1.08998 * 109.47046 * 59.99723 * 11 9 8 36 36 H 1.08995 * 109.47334 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.46857 * 299.99901 * 11 9 8 38 38 H 0.97001 * 119.99668 * 180.02562 * 15 14 12 39 39 H 1.08998 * 113.61128 * 334.56542 * 20 4 3 40 40 H 1.09002 * 113.61478 * 203.66544 * 20 4 3 41 41 H 1.09000 * 113.60997 * 139.97980 * 21 20 4 42 42 H 1.08994 * 113.61531 * 270.88503 * 21 20 4 43 43 H 1.09002 * 113.61667 * 89.11380 * 22 21 20 44 44 H 1.09000 * 113.61703 * 219.93275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5691 1.4428 0.0516 5 6 4.1123 0.9101 1.3525 6 8 4.9065 -0.0005 1.3479 7 8 3.7139 1.4473 2.5163 8 6 4.2779 0.8838 3.7298 9 6 3.7095 1.6186 4.9454 10 6 4.0686 3.1033 4.8578 11 6 2.1877 1.4625 4.9701 12 6 4.2954 1.0341 6.2049 13 1 5.0021 0.2197 6.1444 14 6 3.9284 1.5384 7.4345 15 7 3.0674 2.5298 7.5083 16 14 4.6551 0.8144 8.9957 17 1 5.9007 1.5429 9.3461 18 1 3.6761 0.9457 10.1046 19 1 4.9661 -0.6212 8.7774 20 6 4.2276 0.8214 -1.1914 21 6 4.1952 2.2270 -1.8144 22 6 4.1998 2.7778 -0.3787 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8935 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6470 1.9668 0.8710 29 1 1.7070 1.9456 -0.9078 30 1 4.0218 -0.1738 3.7925 31 1 5.3622 0.9946 3.7120 32 1 3.6451 3.5263 3.9468 33 1 3.6632 3.6269 5.7237 34 1 5.1527 3.2144 4.8402 35 1 1.9319 0.4048 5.0326 36 1 1.7828 1.9857 5.8364 37 1 1.7643 1.8855 4.0592 38 1 2.8095 2.8848 8.3734 39 1 3.5933 0.1005 -1.7071 40 1 5.2352 0.4470 -1.0106 41 1 5.0936 2.4746 -2.3799 42 1 3.2771 2.4411 -2.3614 43 1 5.1998 2.9382 0.0243 44 1 3.5441 3.6372 -0.2386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764833050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:15 Heat of formation + Delta-G solvation = -109.310333 kcal Electronic energy + Delta-G solvation = -21820.131262 eV Core-core repulsion = 18736.801963 eV Total energy + Delta-G solvation = -3083.329299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02029 -39.80969 -38.06741 -36.60887 -35.02818 -33.28675 -29.67428 -27.67303 -27.60077 -27.19861 -26.68310 -25.67535 -22.71798 -22.30586 -20.74797 -19.71868 -18.39859 -17.77387 -17.69202 -17.35365 -16.71958 -16.16945 -15.73650 -15.13564 -14.87104 -14.82454 -14.41392 -14.23654 -13.74384 -13.41596 -13.32237 -13.27197 -13.05784 -12.84655 -12.78748 -12.65251 -12.49246 -12.35348 -12.17192 -12.15158 -11.97884 -11.74968 -11.70321 -11.39617 -11.32593 -11.28363 -11.08096 -10.92609 -10.75217 -10.42364 -8.06423 -6.24787 1.21809 1.41688 1.43148 1.52189 1.85675 2.44165 3.16699 3.34876 3.46122 3.70539 3.83682 3.92291 4.16212 4.21649 4.24722 4.27593 4.39581 4.57149 4.70441 4.71999 4.76745 4.82167 4.83741 4.89196 4.98900 5.01612 5.06416 5.10562 5.16344 5.17817 5.20029 5.25179 5.33878 5.35818 5.45394 5.49866 5.58886 5.61136 5.67160 6.04767 6.15098 6.34944 6.75926 6.83785 7.43144 8.93289 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.004746 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.574184 B = 5898.751678 C = 6238.652845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.086 4.086 5 C 0.462 3.538 6 O -0.552 6.552 7 O -0.349 6.349 8 C 0.096 3.904 9 C 0.062 3.938 10 C -0.116 4.116 11 C -0.115 4.115 12 C -0.536 4.536 13 H 0.046 0.954 14 C 0.029 3.971 15 N -0.898 5.898 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.275 1.275 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.124 4.124 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 0.801 -18.479 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.125 4.125 4 C -0.087 4.087 5 C 0.307 3.693 6 O -0.443 6.443 7 O -0.264 6.264 8 C 0.023 3.977 9 C 0.062 3.938 10 C -0.174 4.174 11 C -0.173 4.173 12 C -0.574 4.574 13 H 0.064 0.936 14 C -0.171 4.171 15 N -0.536 5.536 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.162 4.162 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.336 0.655 -18.285 18.598 hybrid contribution 0.820 -0.798 1.636 1.996 sum -2.516 -0.143 -16.649 16.839 Atomic orbital electron populations 1.21726 0.94148 1.02095 1.02467 1.21553 0.97300 0.96454 1.01149 1.21439 0.88729 0.97796 1.04521 1.22309 0.98682 1.00643 0.87044 1.24542 0.78157 0.79560 0.87041 1.90571 1.34906 1.30245 1.88608 1.86531 1.65055 1.59561 1.15261 1.23201 0.96379 0.96598 0.81539 1.18253 0.93595 0.93041 0.88919 1.21602 0.97864 0.97905 1.00045 1.21586 0.97203 0.98373 1.00134 1.21184 1.26428 1.18411 0.91369 0.93571 1.25502 0.95129 0.95154 1.01294 1.69934 1.32789 1.25688 1.25223 0.85646 0.78314 0.78740 0.79452 1.20188 1.20455 1.19960 1.23001 1.00823 0.98794 0.93019 1.22813 1.04475 0.93381 0.94750 1.23002 1.00812 0.94811 0.97551 0.92491 0.93451 0.90519 0.90415 0.95684 0.91578 0.87007 0.93959 0.93814 0.94926 0.91681 0.96300 0.96412 0.91690 0.94955 0.92752 0.89073 0.90935 0.89561 0.87009 0.91096 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.13 -2.83 5.64 30.60 0.17 -2.66 16 3 C -0.09 -1.87 4.54 30.59 0.14 -1.73 16 4 C -0.09 -2.18 0.90 -52.40 -0.05 -2.23 16 5 C 0.46 17.10 6.22 71.24 0.44 17.55 16 6 O -0.55 -23.59 15.70 21.98 0.35 -23.24 16 7 O -0.35 -14.48 8.75 -51.37 -0.45 -14.93 16 8 C 0.10 4.53 4.26 71.98 0.31 4.84 16 9 C 0.06 3.15 0.58 -52.93 -0.03 3.12 16 10 C -0.12 -5.73 8.11 71.98 0.58 -5.14 16 11 C -0.12 -5.68 8.11 71.98 0.58 -5.09 16 12 C -0.54 -29.53 8.01 25.60 0.21 -29.33 16 13 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 14 C 0.03 1.59 5.15 84.65 0.44 2.02 16 15 N -0.90 -49.33 9.35 21.45 0.20 -49.13 16 16 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 C -0.12 -2.49 6.78 31.12 0.21 -2.28 16 21 C -0.12 -1.72 7.73 31.12 0.24 -1.48 16 22 C -0.12 -2.58 7.21 31.12 0.22 -2.36 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.48 6.76 -2.38 -0.02 1.47 16 27 H 0.02 0.72 7.56 -2.39 -0.02 0.71 16 28 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.11 1.60 7.31 -2.39 -0.02 1.58 16 30 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 31 H 0.04 2.10 8.13 -2.38 -0.02 2.08 16 32 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 33 H 0.06 3.45 6.07 -2.38 -0.01 3.43 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 37 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 38 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.09 1.61 6.70 -2.39 -0.02 1.59 16 40 H 0.07 1.83 7.52 -2.39 -0.02 1.81 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 1.10 7.61 -2.39 -0.02 1.08 16 43 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 44 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -62.67 344.22 7.25 -55.43 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.94 Total: 13.47 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.18 Total: -26.79 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.20 Total: -49.13 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.10 Total: -38.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.67 7.25 -55.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.885 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds