Wall clock time and date at job start Mon Mar 30 2020 07:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.50704 * 109.46817 * 240.00351 * 2 1 3 5 5 H 1.07997 * 119.99834 * 239.99733 * 4 2 1 6 6 C 1.37877 * 120.00239 * 60.00061 * 4 2 1 7 7 N 1.31515 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47000 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47554 * 119.99842 * 8 6 4 11 11 H 1.48503 * 109.46757 * 239.99725 * 8 6 4 12 12 C 1.52998 * 109.47398 * 120.00503 * 2 1 3 13 13 O 1.45200 * 109.46703 * 299.99568 * 12 2 1 14 14 C 1.34233 * 116.99863 * 179.97438 * 13 12 2 15 15 O 1.20827 * 119.99567 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99998 * 180.02562 * 14 13 12 17 17 C 1.52996 * 117.50039 * 260.37337 * 16 14 13 18 18 C 1.53000 * 117.49927 * 215.00536 * 17 16 14 19 19 C 1.53001 * 117.49818 * 0.02595 * 17 16 14 20 20 C 1.52996 * 117.50126 * 329.03386 * 16 14 13 21 21 C 1.53004 * 117.49825 * 359.97438 * 20 16 14 22 22 C 1.53004 * 117.50015 * 144.97131 * 20 16 14 23 23 H 1.08999 * 109.46590 * 299.99840 * 1 2 3 24 24 H 1.08996 * 109.46961 * 59.99413 * 1 2 3 25 25 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46863 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46992 * 300.00134 * 3 2 1 28 28 H 1.08993 * 109.46930 * 60.00830 * 3 2 1 29 29 H 0.96996 * 120.00344 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47153 * 179.97438 * 12 2 1 31 31 H 1.09005 * 109.47075 * 59.99381 * 12 2 1 32 32 H 1.09002 * 115.54998 * 114.70570 * 16 14 13 33 33 H 1.09004 * 109.47174 * 111.39552 * 18 17 16 34 34 H 1.09005 * 109.46814 * 231.38668 * 18 17 16 35 35 H 1.08991 * 109.47202 * 351.38950 * 18 17 16 36 36 H 1.09004 * 109.47296 * 8.60643 * 19 17 16 37 37 H 1.08999 * 109.47558 * 128.60633 * 19 17 16 38 38 H 1.09002 * 109.47359 * 248.61080 * 19 17 16 39 39 H 1.09002 * 109.46775 * 106.37310 * 21 20 16 40 40 H 1.08993 * 109.47046 * 226.37699 * 21 20 16 41 41 H 1.08998 * 109.46875 * 346.37461 * 21 20 16 42 42 H 1.09002 * 109.46711 * 8.61317 * 22 20 16 43 43 H 1.09003 * 109.47068 * 128.60993 * 22 20 16 44 44 H 1.08996 * 109.47365 * 248.61341 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6040 10 1 1.1660 -1.5865 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 6 2.0401 -0.7213 1.2491 13 8 1.5562 -0.0368 2.4347 14 6 1.9164 -0.5473 3.6228 15 8 2.6127 -1.5336 3.6704 16 6 1.4516 0.1092 4.8971 17 6 2.4369 1.0327 5.6162 18 6 2.4008 1.0505 7.1457 19 6 3.8186 1.2195 4.9862 20 6 1.2359 1.6237 4.8737 21 6 1.5093 2.3560 3.5583 22 6 0.0903 2.1873 5.7169 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7081 1.1610 -3.4844 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 0.7777 -0.4857 5.5136 33 1 3.3141 0.6012 7.5359 34 1 2.3245 2.0802 7.4953 35 1 1.5385 0.4831 7.4954 36 1 3.8336 0.7566 3.9995 37 1 4.0339 2.2838 4.8915 38 1 4.5727 0.7511 5.6187 39 1 0.5634 2.6432 3.0991 40 1 2.1030 3.2483 3.7559 41 1 2.0560 1.6979 2.8830 42 1 -0.3205 1.3974 6.3458 43 1 0.4654 2.9946 6.3461 44 1 -0.6898 2.5713 5.0598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764838450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:36 Heat of formation + Delta-G solvation = -82.579175 kcal Electronic energy + Delta-G solvation = -22110.485760 eV Core-core repulsion = 19028.315611 eV Total energy + Delta-G solvation = -3082.170149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65889 -38.50061 -36.48819 -34.80287 -31.28488 -31.16709 -28.86419 -28.20922 -26.34866 -25.68045 -25.57432 -25.06683 -22.60727 -19.71539 -18.81381 -17.86890 -16.70898 -16.32866 -15.83849 -15.60733 -14.78404 -14.68612 -14.20968 -13.57239 -13.43190 -12.93241 -12.83107 -12.57788 -12.52943 -12.46986 -12.28037 -12.09858 -11.86097 -11.74457 -11.53577 -11.31947 -11.18564 -10.98944 -10.67972 -10.63584 -10.39961 -10.22256 -10.11482 -9.86839 -9.70028 -9.37311 -9.30006 -9.24938 -8.73226 -8.36994 -6.01335 -4.12601 2.56650 3.17760 3.26950 3.35496 3.40375 3.60409 4.38741 4.47773 4.55047 4.69841 4.95638 5.13743 5.25239 5.44413 5.46443 5.50072 5.64336 5.67697 5.77386 5.82392 5.83953 5.96052 6.01661 6.06181 6.10861 6.13110 6.13404 6.23636 6.33952 6.49432 6.69204 6.82981 7.00152 7.09656 7.16454 7.19381 7.42198 7.63791 7.71129 8.06803 8.17424 8.31405 8.41639 8.87546 9.52928 10.99788 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.004813 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.192588 B = 5816.358190 C = 6101.541831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.072 3.928 3 C -0.132 4.132 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.078 3.922 13 O -0.335 6.335 14 C 0.486 3.514 15 O -0.517 6.517 16 C -0.153 4.153 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.094 4.094 21 C -0.133 4.133 22 C -0.114 4.114 23 H 0.017 0.983 24 H 0.083 0.917 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.083 0.917 28 H 0.021 0.979 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 4.255 15.874 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.189 4.189 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.005 3.995 13 O -0.251 6.251 14 C 0.330 3.670 15 O -0.407 6.407 16 C -0.172 4.172 17 C -0.095 4.095 18 C -0.169 4.169 19 C -0.177 4.177 20 C -0.094 4.094 21 C -0.189 4.189 22 C -0.171 4.171 23 H 0.036 0.964 24 H 0.102 0.898 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.120 4.076 15.679 16.200 hybrid contribution 0.349 -0.842 -0.906 1.285 sum 0.469 3.234 14.773 15.130 Atomic orbital electron populations 1.21760 0.97333 0.98886 1.00656 1.18220 0.93378 0.93045 0.88238 1.21825 0.97972 0.98232 1.00904 1.20986 1.31825 1.12230 0.89863 0.92550 1.24845 0.94818 0.94911 0.98742 1.69838 1.36385 1.22635 1.23139 0.86506 0.78655 0.79722 0.82951 1.19802 1.20975 1.20976 1.23693 0.98112 0.95976 0.81674 1.86656 1.69211 1.54499 1.14767 1.22477 0.77149 0.81824 0.85595 1.90621 1.35848 1.25950 1.88277 1.22498 1.05561 0.94093 0.95071 1.21777 0.92174 1.00812 0.94762 1.21340 1.02202 1.02016 0.91341 1.21409 0.93606 1.02090 1.00568 1.21827 0.96862 0.92289 0.98471 1.21800 1.02967 1.00175 0.93960 1.21355 0.96287 1.00559 0.98890 0.96375 0.89803 0.95965 0.95987 0.89821 0.95965 0.93003 0.92714 0.92696 0.84709 0.91957 0.91674 0.92207 0.92319 0.91526 0.91891 0.91604 0.92779 0.88955 0.92532 0.91992 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 2 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 3 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 4 C -0.51 -13.66 8.01 -34.44 -0.28 -13.94 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -23.85 9.35 55.43 0.52 -23.33 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.08 1.74 4.26 37.16 0.16 1.90 16 13 O -0.34 -6.64 5.67 -39.27 -0.22 -6.86 16 14 C 0.49 8.93 5.26 36.00 0.19 9.12 16 15 O -0.52 -10.89 16.84 -18.75 -0.32 -11.21 16 16 C -0.15 -2.16 5.54 -91.78 -0.51 -2.67 16 17 C -0.10 -1.14 2.70 -154.47 -0.42 -1.55 16 18 C -0.11 -1.01 8.88 37.16 0.33 -0.68 16 19 C -0.12 -1.51 8.70 37.16 0.32 -1.19 16 20 C -0.09 -1.17 2.70 -154.47 -0.42 -1.58 16 21 C -0.13 -1.87 7.75 37.16 0.29 -1.58 16 22 C -0.11 -1.11 8.88 37.16 0.33 -0.78 16 23 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 28 H 0.02 0.46 6.14 -51.93 -0.32 0.14 16 29 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.24 8.13 -51.93 -0.42 0.81 16 31 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.14 1.67 7.96 -51.93 -0.41 1.25 16 33 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 35 H 0.06 0.50 7.78 -51.93 -0.40 0.09 16 36 H 0.06 0.90 6.04 -51.93 -0.31 0.59 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.55 3.32 -51.93 -0.17 1.38 16 42 H 0.06 0.49 7.78 -51.93 -0.40 0.09 16 43 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 44 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -28.35 338.97 -7.13 -35.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.62 Total: 0.13 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 0.42 Total: -15.17 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.52 Total: -23.33 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.54 Total: -18.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.35 -7.13 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.099 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds