Wall clock time and date at job start Mon Mar 30 2020 07:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.50704 * 109.46817 * 240.00351 * 2 1 3 5 5 H 1.07997 * 119.99834 * 239.99733 * 4 2 1 6 6 C 1.37877 * 120.00239 * 60.00061 * 4 2 1 7 7 N 1.31515 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47000 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47554 * 119.99842 * 8 6 4 11 11 H 1.48503 * 109.46757 * 239.99725 * 8 6 4 12 12 C 1.52998 * 109.47398 * 120.00503 * 2 1 3 13 13 O 1.45200 * 109.46703 * 299.99568 * 12 2 1 14 14 C 1.34233 * 116.99863 * 179.97438 * 13 12 2 15 15 O 1.20827 * 119.99567 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99998 * 180.02562 * 14 13 12 17 17 C 1.52996 * 117.50039 * 260.37337 * 16 14 13 18 18 C 1.53000 * 117.49927 * 215.00536 * 17 16 14 19 19 C 1.53001 * 117.49818 * 0.02595 * 17 16 14 20 20 C 1.52996 * 117.50126 * 329.03386 * 16 14 13 21 21 C 1.53004 * 117.49825 * 359.97438 * 20 16 14 22 22 C 1.53004 * 117.50015 * 144.97131 * 20 16 14 23 23 H 1.08999 * 109.46590 * 299.99840 * 1 2 3 24 24 H 1.08996 * 109.46961 * 59.99413 * 1 2 3 25 25 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46863 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46992 * 300.00134 * 3 2 1 28 28 H 1.08993 * 109.46930 * 60.00830 * 3 2 1 29 29 H 0.96996 * 120.00344 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47153 * 179.97438 * 12 2 1 31 31 H 1.09005 * 109.47075 * 59.99381 * 12 2 1 32 32 H 1.09002 * 115.54998 * 114.70570 * 16 14 13 33 33 H 1.09004 * 109.47174 * 111.39552 * 18 17 16 34 34 H 1.09005 * 109.46814 * 231.38668 * 18 17 16 35 35 H 1.08991 * 109.47202 * 351.38950 * 18 17 16 36 36 H 1.09004 * 109.47296 * 8.60643 * 19 17 16 37 37 H 1.08999 * 109.47558 * 128.60633 * 19 17 16 38 38 H 1.09002 * 109.47359 * 248.61080 * 19 17 16 39 39 H 1.09002 * 109.46775 * 106.37310 * 21 20 16 40 40 H 1.08993 * 109.47046 * 226.37699 * 21 20 16 41 41 H 1.08998 * 109.46875 * 346.37461 * 21 20 16 42 42 H 1.09002 * 109.46711 * 8.61317 * 22 20 16 43 43 H 1.09003 * 109.47068 * 128.60993 * 22 20 16 44 44 H 1.08996 * 109.47365 * 248.61341 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6040 10 1 1.1660 -1.5865 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 6 2.0401 -0.7213 1.2491 13 8 1.5562 -0.0368 2.4347 14 6 1.9164 -0.5473 3.6228 15 8 2.6127 -1.5336 3.6704 16 6 1.4516 0.1092 4.8971 17 6 2.4369 1.0327 5.6162 18 6 2.4008 1.0505 7.1457 19 6 3.8186 1.2195 4.9862 20 6 1.2359 1.6237 4.8737 21 6 1.5093 2.3560 3.5583 22 6 0.0903 2.1873 5.7169 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7081 1.1610 -3.4844 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 0.7777 -0.4857 5.5136 33 1 3.3141 0.6012 7.5359 34 1 2.3245 2.0802 7.4953 35 1 1.5385 0.4831 7.4954 36 1 3.8336 0.7566 3.9995 37 1 4.0339 2.2838 4.8915 38 1 4.5727 0.7511 5.6187 39 1 0.5634 2.6432 3.0991 40 1 2.1030 3.2483 3.7559 41 1 2.0560 1.6979 2.8830 42 1 -0.3205 1.3974 6.3458 43 1 0.4654 2.9946 6.3461 44 1 -0.6898 2.5713 5.0598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764838450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:36 Heat of formation + Delta-G solvation = -95.193481 kcal Electronic energy + Delta-G solvation = -22111.032758 eV Core-core repulsion = 19028.315611 eV Total energy + Delta-G solvation = -3082.717146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99860 -39.74796 -38.22306 -36.60832 -33.27330 -32.09203 -29.78749 -29.33265 -27.64243 -27.55001 -27.07426 -26.98397 -23.92459 -21.14096 -20.65945 -18.85806 -18.24294 -17.85140 -17.61339 -17.18884 -16.56599 -15.68534 -15.42405 -15.13188 -14.81347 -14.46080 -14.26137 -14.01109 -13.49830 -13.43451 -13.35751 -13.31481 -13.14908 -13.10176 -12.93354 -12.75871 -12.64266 -12.62007 -12.47281 -12.32548 -12.13592 -11.81377 -11.68998 -11.57612 -11.21828 -11.16159 -10.73169 -10.67125 -10.41220 -10.31661 -8.05505 -6.23419 1.14009 1.40514 1.43486 1.53179 1.78101 2.44030 2.56346 3.17760 3.45575 3.54144 3.68043 4.04196 4.12255 4.22047 4.24566 4.28925 4.55362 4.60477 4.68989 4.73629 4.84708 4.87812 4.91163 4.99107 5.00035 5.04244 5.10483 5.12300 5.17553 5.19417 5.22119 5.24712 5.30293 5.36716 5.48517 5.58649 5.63083 5.65652 5.68441 6.08179 6.17901 6.37016 6.76134 6.83770 7.44492 8.94134 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.004813 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.192588 B = 5816.358190 C = 6101.541831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.065 3.935 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.091 3.909 13 O -0.334 6.334 14 C 0.484 3.516 15 O -0.551 6.551 16 C -0.174 4.174 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.135 4.135 22 C -0.111 4.111 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.156 0.844 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 5.154 17.812 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.018 3.982 13 O -0.249 6.249 14 C 0.330 3.670 15 O -0.442 6.442 16 C -0.192 4.192 17 C -0.083 4.083 18 C -0.166 4.166 19 C -0.180 4.180 20 C -0.087 4.087 21 C -0.191 4.191 22 C -0.167 4.167 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.230 4.986 17.628 18.321 hybrid contribution 0.483 -1.097 -1.483 1.907 sum 0.252 3.889 16.145 16.609 Atomic orbital electron populations 1.21599 0.97099 0.98389 1.00319 1.18223 0.93531 0.93359 0.88459 1.21653 0.97472 0.97774 1.00690 1.21226 1.32305 1.12401 0.91345 0.93645 1.25476 0.94958 0.95552 1.01036 1.69939 1.36633 1.23229 1.23766 0.85620 0.78192 0.78664 0.79825 1.19947 1.20466 1.20429 1.23248 0.97257 0.95215 0.82497 1.86692 1.69235 1.54199 1.14796 1.23406 0.76151 0.81364 0.86092 1.90596 1.37405 1.27627 1.88578 1.22714 1.07841 0.95348 0.93310 1.21980 0.91196 0.98482 0.96599 1.21395 1.03090 1.03622 0.88495 1.21448 0.94774 1.02830 0.98952 1.21912 0.98213 0.90494 0.98105 1.21754 1.02488 1.00372 0.94501 1.21384 0.95056 1.01518 0.98779 0.94846 0.91772 0.96480 0.96518 0.91945 0.94043 0.92821 0.93792 0.93882 0.82662 0.91469 0.89675 0.91010 0.95785 0.90047 0.90831 0.92099 0.91257 0.91905 0.91083 0.89991 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.11 71.98 0.58 -5.07 16 2 C 0.06 3.21 0.58 -52.93 -0.03 3.18 16 3 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 4 C -0.53 -29.20 8.01 25.60 0.21 -29.00 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.61 5.15 84.65 0.44 2.04 16 7 N -0.90 -48.96 9.35 21.45 0.20 -48.76 16 8 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.09 4.20 4.26 71.98 0.31 4.51 16 13 O -0.33 -13.38 5.67 -51.45 -0.29 -13.68 16 14 C 0.48 17.89 5.26 71.23 0.37 18.27 16 15 O -0.55 -23.69 16.84 21.96 0.37 -23.32 16 16 C -0.17 -4.61 5.54 -11.54 -0.06 -4.68 16 17 C -0.08 -1.76 2.70 -52.16 -0.14 -1.90 16 18 C -0.11 -1.54 8.88 71.98 0.64 -0.90 16 19 C -0.12 -2.95 8.70 71.98 0.63 -2.32 16 20 C -0.09 -1.94 2.70 -52.16 -0.14 -2.08 16 21 C -0.13 -3.62 7.75 71.98 0.56 -3.06 16 22 C -0.11 -1.74 8.88 71.98 0.64 -1.10 16 23 H 0.03 1.46 7.68 -2.39 -0.02 1.45 16 24 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 28 H 0.04 1.77 6.14 -2.39 -0.01 1.75 16 29 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 30 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 31 H 0.04 2.04 8.13 -2.38 -0.02 2.02 16 32 H 0.16 3.46 7.96 -2.39 -0.02 3.44 16 33 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 34 H 0.08 0.91 8.03 -2.38 -0.02 0.89 16 35 H 0.07 0.88 7.78 -2.39 -0.02 0.86 16 36 H 0.02 0.73 6.04 -2.39 -0.01 0.71 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 39 H 0.06 1.66 8.00 -2.39 -0.02 1.65 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 2.09 3.32 -2.39 -0.01 2.09 16 42 H 0.07 0.94 7.78 -2.39 -0.02 0.92 16 43 H 0.08 0.99 8.03 -2.39 -0.02 0.98 16 44 H 0.06 1.04 7.98 -2.39 -0.02 1.02 16 Total: -1.00 -61.72 338.97 7.84 -53.88 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.96 Total: 13.98 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.58 Total: -27.19 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.20 Total: -48.76 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: 0.08 Total: -37.00 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.72 7.84 -53.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.315 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds