Wall clock time and date at job start Mon Mar 30 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 N 1.40100 * 119.99934 * 269.99419 * 12 2 1 14 14 C 1.29790 * 119.99934 * 180.02562 * 13 12 2 15 15 C 1.47422 * 120.00042 * 180.02562 * 14 13 12 16 16 C 1.40755 * 119.75868 * 359.72629 * 15 14 13 17 17 C 1.35699 * 120.83479 * 179.71005 * 16 15 14 18 18 C 1.40721 * 120.03155 * 0.56110 * 17 16 15 19 19 C 1.40488 * 121.02244 * 179.74125 * 18 17 16 20 20 C 1.36139 * 119.72136 * 180.02562 * 19 18 17 21 21 C 1.39369 * 121.00798 * 359.95523 * 20 19 18 22 22 C 1.36082 * 120.95877 * 359.97438 * 21 20 19 23 23 C 1.40670 * 119.66196 * 0.02562 * 22 21 20 24 24 C 1.38590 * 119.76181 * 179.97438 * 15 14 13 25 25 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 27 27 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00096 * 90.00180 * 12 2 1 30 30 H 1.07995 * 119.99599 * 0.02562 * 14 13 12 31 31 H 1.08007 * 119.58079 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.98091 * 180.28109 * 17 16 15 33 33 H 1.08000 * 120.14090 * 0.05198 * 19 18 17 34 34 H 1.07997 * 119.49702 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.51652 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.17054 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.27609 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5816 3.4345 15 6 2.9299 0.1766 4.6748 16 6 2.6983 1.5646 4.7024 17 6 2.9111 2.2829 5.8339 18 6 3.3804 1.6434 6.9963 19 6 3.6130 2.3676 8.1774 20 6 4.0676 1.7221 9.2865 21 6 4.3065 0.3491 9.2708 22 6 4.0915 -0.3860 8.1460 23 6 3.6219 0.2461 6.9803 24 6 3.3917 -0.4817 5.8036 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7173 1.1669 -3.4844 29 1 2.1799 -1.6467 1.1723 30 1 2.8653 -1.6460 3.4075 31 1 2.3426 2.0637 3.8131 32 1 2.7246 3.3466 5.8410 33 1 3.4315 3.4319 8.2056 34 1 4.2456 2.2825 10.1924 35 1 4.6666 -0.1386 10.1646 36 1 4.2805 -1.4493 8.1482 37 1 3.5726 -1.5462 5.7774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:29 Heat of formation + Delta-G solvation = 76.299423 kcal Electronic energy + Delta-G solvation = -18361.260587 eV Core-core repulsion = 15489.748507 eV Total energy + Delta-G solvation = -2871.512080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17835 -37.11780 -35.93195 -33.95314 -32.70702 -31.57444 -29.96168 -29.23827 -27.10028 -25.27779 -23.56145 -23.16634 -21.86311 -20.70102 -20.15971 -17.47187 -17.12509 -16.44838 -16.10927 -15.41529 -15.00705 -14.69586 -14.20280 -13.66306 -13.61452 -13.29195 -13.22460 -12.74045 -12.58806 -12.50719 -11.87005 -11.69216 -11.25977 -11.12866 -10.99067 -10.82284 -10.78372 -10.53143 -10.28747 -10.24304 -9.89486 -9.60128 -9.07813 -8.64516 -8.49158 -7.92894 -6.81075 -6.17848 -4.26536 0.52394 0.99923 2.04475 2.64548 3.21631 3.28316 3.30776 3.47110 3.71828 4.28318 4.32901 4.63231 4.82690 4.91469 5.03250 5.13832 5.14958 5.26533 5.37941 5.44953 5.55697 5.77739 5.92192 6.00835 6.11945 6.27940 6.33040 6.45897 6.51754 6.71816 6.73762 6.87013 6.94949 6.96873 7.09211 7.09992 7.52802 7.72182 7.80573 8.08895 8.23945 8.80399 9.23737 9.40501 10.88081 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.002940 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.632679 B = 9520.034583 C = 9787.999220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.296 3.704 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.619 5.619 13 N -0.188 5.188 14 C -0.022 4.022 15 C 0.007 3.993 16 C -0.091 4.091 17 C -0.112 4.112 18 C -0.059 4.059 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.044 4.044 24 C -0.113 4.113 25 H 0.026 0.974 26 H 0.013 0.987 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.370 0.630 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 0.046 19.978 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.355 5.355 13 N -0.001 5.001 14 C -0.229 4.229 15 C 0.005 3.995 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.059 4.059 19 C -0.121 4.121 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.044 4.044 24 C -0.135 4.135 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.206 0.794 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.262 1.149 19.201 19.702 hybrid contribution 0.533 -1.713 -0.711 1.930 sum 4.795 -0.564 18.490 19.110 Atomic orbital electron populations 1.22210 0.98887 0.99277 1.00618 1.18581 0.90227 0.93601 0.78222 0.93943 1.21221 1.32449 1.13266 0.90181 0.92172 1.24859 0.94808 0.94963 0.98985 1.69884 1.36027 1.22411 1.24001 0.86414 0.79216 0.79263 0.82026 1.20493 1.20969 1.19864 1.49143 1.71640 1.07898 1.06793 1.73920 1.03822 1.28273 0.94106 1.23481 1.10296 0.96946 0.92221 1.18437 0.96731 0.92775 0.91556 1.21118 0.97992 0.93373 0.98543 1.20927 1.00084 0.99757 0.92205 1.18133 1.00486 0.92892 0.94429 1.21019 0.99152 0.99523 0.92387 1.20776 1.00768 0.94752 0.98373 1.20773 1.00874 0.94262 0.98192 1.21027 0.99423 0.99679 0.92395 1.17951 0.99628 0.92772 0.94081 1.21211 1.01432 0.99425 0.91437 0.95468 0.96804 0.89094 0.92496 0.79416 0.87962 0.84781 0.85672 0.85885 0.86434 0.86395 0.85800 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.30 37.16 0.35 -3.34 16 2 C 0.30 7.48 3.23 -69.08 -0.22 7.26 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.31 -17.82 -0.09 1.70 16 7 N -0.89 -24.52 11.33 55.43 0.63 -23.89 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.62 -13.61 6.10 -5.88 -0.04 -13.65 16 13 N -0.19 -3.81 10.57 32.15 0.34 -3.47 16 14 C -0.02 -0.38 10.72 -14.68 -0.16 -0.53 16 15 C 0.01 0.11 5.86 -105.08 -0.62 -0.50 16 16 C -0.09 -1.36 9.47 -39.54 -0.37 -1.73 16 17 C -0.11 -1.44 9.73 -39.55 -0.38 -1.83 16 18 C -0.06 -0.75 5.75 -106.75 -0.61 -1.36 16 19 C -0.10 -1.09 9.76 -39.49 -0.39 -1.47 16 20 C -0.13 -1.22 9.95 -39.92 -0.40 -1.61 16 21 C -0.12 -1.16 9.95 -39.94 -0.40 -1.56 16 22 C -0.11 -1.13 9.77 -39.44 -0.39 -1.52 16 23 C -0.04 -0.56 5.74 -106.85 -0.61 -1.18 16 24 C -0.11 -1.48 9.53 -38.69 -0.37 -1.85 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 2.39 6.08 -51.93 -0.32 2.07 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.37 7.51 8.58 -182.60 -1.57 5.95 16 30 H 0.10 1.54 8.02 -52.49 -0.42 1.12 16 31 H 0.13 2.12 7.51 -52.48 -0.39 1.72 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -28.71 320.70 -10.27 -38.98 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.05 Total: 5.62 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -4.97 Total: -24.04 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.93 Total: -41.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.71 -10.27 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.277 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds