Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 N 1.40100 * 119.99934 * 269.99419 * 12 2 1 14 14 C 1.29790 * 119.99934 * 180.02562 * 13 12 2 15 15 C 1.47422 * 120.00042 * 180.02562 * 14 13 12 16 16 C 1.40755 * 119.75868 * 359.72629 * 15 14 13 17 17 C 1.35699 * 120.83479 * 179.71005 * 16 15 14 18 18 C 1.40721 * 120.03155 * 0.56110 * 17 16 15 19 19 C 1.40488 * 121.02244 * 179.74125 * 18 17 16 20 20 C 1.36139 * 119.72136 * 180.02562 * 19 18 17 21 21 C 1.39369 * 121.00798 * 359.95523 * 20 19 18 22 22 C 1.36082 * 120.95877 * 359.97438 * 21 20 19 23 23 C 1.40670 * 119.66196 * 0.02562 * 22 21 20 24 24 C 1.38590 * 119.76181 * 179.97438 * 15 14 13 25 25 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 27 27 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00096 * 90.00180 * 12 2 1 30 30 H 1.07995 * 119.99599 * 0.02562 * 14 13 12 31 31 H 1.08007 * 119.58079 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.98091 * 180.28109 * 17 16 15 33 33 H 1.08000 * 120.14090 * 0.05198 * 19 18 17 34 34 H 1.07997 * 119.49702 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.51652 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.17054 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.27609 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5816 3.4345 15 6 2.9299 0.1766 4.6748 16 6 2.6983 1.5646 4.7024 17 6 2.9111 2.2829 5.8339 18 6 3.3804 1.6434 6.9963 19 6 3.6130 2.3676 8.1774 20 6 4.0676 1.7221 9.2865 21 6 4.3065 0.3491 9.2708 22 6 4.0915 -0.3860 8.1460 23 6 3.6219 0.2461 6.9803 24 6 3.3917 -0.4817 5.8036 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7173 1.1669 -3.4844 29 1 2.1799 -1.6467 1.1723 30 1 2.8653 -1.6460 3.4075 31 1 2.3426 2.0637 3.8131 32 1 2.7246 3.3466 5.8410 33 1 3.4315 3.4319 8.2056 34 1 4.2456 2.2825 10.1924 35 1 4.6666 -0.1386 10.1646 36 1 4.2805 -1.4493 8.1482 37 1 3.5726 -1.5462 5.7774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = 61.709590 kcal Electronic energy + Delta-G solvation = -18361.893250 eV Core-core repulsion = 15489.748507 eV Total energy + Delta-G solvation = -2872.144742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10483 -38.41787 -37.27145 -35.65142 -33.73860 -33.18254 -31.21964 -30.21601 -28.64164 -27.31297 -24.74474 -24.10637 -22.78584 -22.35555 -21.60553 -18.98295 -18.11693 -17.85009 -17.36795 -16.79656 -16.65070 -15.66405 -15.48096 -14.98838 -14.70916 -14.54229 -14.29666 -14.14622 -14.11948 -13.65770 -13.43241 -12.95714 -12.82795 -12.77188 -12.63262 -12.29957 -12.14425 -11.87198 -11.86641 -11.68752 -11.17443 -10.91670 -10.83926 -10.59721 -9.65765 -8.93754 -8.30333 -8.17132 -6.37008 -0.42205 0.01934 1.09261 1.41989 1.42626 1.52439 1.53541 2.14602 2.41096 2.45584 3.09321 3.30178 3.75998 3.83659 4.02585 4.12104 4.23368 4.37818 4.48349 4.49139 4.62997 4.66834 4.74954 4.94775 4.98777 5.03430 5.07691 5.10863 5.33347 5.38261 5.42869 5.49740 5.60915 5.68189 5.73849 5.79549 5.87665 5.97098 6.15544 6.17666 6.38524 6.81885 7.34623 7.74094 8.85609 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.047800 B = 0.002940 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.632679 B = 9520.034583 C = 9787.999220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.307 3.693 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.639 5.639 13 N -0.240 5.240 14 C 0.021 3.979 15 C -0.034 4.034 16 C -0.112 4.112 17 C -0.112 4.112 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.068 4.068 24 C -0.090 4.090 25 H 0.031 0.969 26 H 0.017 0.983 27 H 0.069 0.931 28 H 0.267 0.733 29 H 0.374 0.626 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -1.072 23.005 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.203 3.797 3 H 0.019 0.981 4 C -0.588 4.588 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.376 5.376 13 N -0.050 5.050 14 C -0.189 4.189 15 C -0.036 4.036 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.071 4.071 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.068 4.068 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.211 0.789 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.661 0.031 22.247 22.956 hybrid contribution 0.235 -1.317 -1.153 1.766 sum 5.896 -1.286 21.094 21.941 Atomic orbital electron populations 1.22026 0.98758 0.99130 0.99660 1.18129 0.90289 0.91597 0.79659 0.98142 1.21518 1.32654 1.13459 0.91141 0.92040 1.25725 0.94887 0.95610 1.01973 1.70015 1.36906 1.23639 1.24741 0.85356 0.78772 0.78174 0.78091 1.19604 1.20649 1.19403 1.48573 1.74417 1.07739 1.06889 1.73978 1.07734 1.28786 0.94510 1.24066 1.05080 0.98082 0.91635 1.18474 1.00341 0.93034 0.91726 1.21039 0.99610 0.93804 0.98701 1.21126 0.99406 1.00626 0.91768 1.18438 1.00181 0.93428 0.95015 1.21295 0.99629 1.00670 0.91978 1.21235 0.98435 0.95149 0.98920 1.21223 0.99404 0.94370 0.98879 1.21329 0.98904 1.01052 0.91795 1.18255 1.00590 0.93070 0.94880 1.21513 0.98542 1.00546 0.90589 0.95011 0.96410 0.91202 0.92344 0.78859 0.85854 0.86952 0.83888 0.83990 0.83458 0.83323 0.83517 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.99 9.30 71.98 0.67 -6.32 16 2 C 0.31 16.38 3.23 44.25 0.14 16.52 16 3 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 4 C -0.55 -30.22 8.73 25.60 0.22 -29.99 16 5 H 0.06 3.28 7.79 -2.91 -0.02 3.26 16 6 C 0.02 1.00 5.31 84.65 0.45 1.45 16 7 N -0.91 -52.28 11.33 21.45 0.24 -52.03 16 8 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 N -0.64 -29.42 6.10 -172.51 -1.05 -30.48 16 13 N -0.24 -10.21 10.57 -52.20 -0.55 -10.77 16 14 C 0.02 0.71 10.72 87.42 0.94 1.65 16 15 C -0.03 -1.02 5.86 -20.16 -0.12 -1.14 16 16 C -0.11 -3.47 9.47 22.30 0.21 -3.26 16 17 C -0.11 -2.86 9.73 22.29 0.22 -2.64 16 18 C -0.07 -1.66 5.75 -21.24 -0.12 -1.78 16 19 C -0.12 -2.14 9.76 22.33 0.22 -1.92 16 20 C -0.12 -1.75 9.95 22.05 0.22 -1.53 16 21 C -0.12 -1.73 9.95 22.04 0.22 -1.51 16 22 C -0.11 -1.95 9.77 22.36 0.22 -1.73 16 23 C -0.07 -1.57 5.74 -21.31 -0.12 -1.69 16 24 C -0.09 -2.20 9.53 22.85 0.22 -1.98 16 25 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 3.85 6.08 -2.38 -0.01 3.83 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.37 15.74 8.58 -213.32 -1.83 13.91 16 30 H 0.12 3.58 8.02 -2.91 -0.02 3.56 16 31 H 0.11 3.88 7.51 -2.91 -0.02 3.86 16 32 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -64.63 320.70 3.48 -61.15 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.76 Total: 23.17 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.58 Total: -35.88 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -1.36 Total: -93.28 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.63 3.48 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.861 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds