Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50703 * 109.47419 * 120.00478 * 2 1 3 5 5 H 1.08000 * 120.00161 * 114.36264 * 4 2 1 6 6 C 1.37881 * 119.99525 * 294.36499 * 4 2 1 7 7 N 1.31513 * 119.99659 * 156.61593 * 6 4 2 8 8 Si 1.86802 * 120.00164 * 336.88542 * 6 4 2 9 9 H 1.48497 * 109.46648 * 179.72694 * 8 6 4 10 10 H 1.48498 * 109.47155 * 299.73023 * 8 6 4 11 11 H 1.48505 * 109.46685 * 59.72885 * 8 6 4 12 12 N 1.46496 * 109.47064 * 240.00524 * 2 1 3 13 13 N 1.40094 * 120.00360 * 89.99686 * 12 2 1 14 14 C 1.29787 * 120.00318 * 180.02562 * 13 12 2 15 15 C 1.47428 * 119.99978 * 180.02562 * 14 13 12 16 16 C 1.40750 * 119.76358 * 359.97438 * 15 14 13 17 17 C 1.35691 * 120.84061 * 179.97438 * 16 15 14 18 18 C 1.40723 * 120.03417 * 0.04263 * 17 16 15 19 19 C 1.40482 * 121.03317 * 180.02562 * 18 17 16 20 20 C 1.36145 * 119.72028 * 179.97438 * 19 18 17 21 21 C 1.39358 * 121.01661 * 359.97438 * 20 19 18 22 22 C 1.36091 * 120.95260 * 359.97438 * 21 20 19 23 23 C 1.40665 * 119.65987 * 0.02562 * 22 21 20 24 24 C 1.38592 * 119.75888 * 179.72895 * 15 14 13 25 25 H 1.08997 * 109.46949 * 53.12525 * 1 2 3 26 26 H 1.08996 * 109.47111 * 173.12987 * 1 2 3 27 27 H 1.09003 * 109.46762 * 293.12824 * 1 2 3 28 28 H 0.96997 * 120.00046 * 355.20255 * 7 6 4 29 29 H 0.97007 * 119.99933 * 270.00345 * 12 2 1 30 30 H 1.07993 * 119.99795 * 0.02562 * 14 13 12 31 31 H 1.08002 * 119.57915 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.98519 * 180.02562 * 17 16 15 33 33 H 1.07997 * 120.13864 * 359.96291 * 19 18 17 34 34 H 1.08006 * 119.48978 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.52701 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.17104 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.27919 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1756 2.4794 7 7 1.8028 -0.9539 3.5395 8 14 1.4654 1.6532 2.6649 9 1 1.2395 1.9723 4.0974 10 1 2.6333 2.4219 2.1646 11 1 0.2589 2.0190 1.8799 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0300 -2.3748 14 6 2.6839 -0.5818 -3.4347 15 6 2.9301 0.1766 -4.6747 16 6 2.6943 1.5639 -4.7037 17 6 2.9140 2.2834 -5.8330 18 6 3.3826 1.6438 -6.9956 19 6 3.6177 2.3683 -8.1761 20 6 4.0716 1.7225 -9.2853 21 6 4.3088 0.3493 -9.2701 22 6 4.0938 -0.3858 -8.1452 23 6 3.6249 0.2466 -6.9795 24 6 3.3969 -0.4808 -5.8019 25 1 -0.3633 0.6167 -0.8221 26 1 -0.3633 -1.0202 -0.1229 27 1 -0.3633 0.4037 0.9451 28 1 1.9021 -1.9133 3.4364 29 1 2.1800 -1.6467 -1.1723 30 1 2.8632 -1.6464 -3.4082 31 1 2.3347 2.0623 -3.8156 32 1 2.7288 3.3473 -5.8398 33 1 3.4388 3.4330 -8.2036 34 1 4.2514 2.2832 -10.1907 35 1 4.6684 -0.1387 -10.1640 36 1 4.2814 -1.4493 -8.1476 37 1 3.5809 -1.5446 -5.7748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = 76.477562 kcal Electronic energy + Delta-G solvation = -18426.096722 eV Core-core repulsion = 15554.592367 eV Total energy + Delta-G solvation = -2871.504355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24679 -37.22518 -36.06593 -34.01696 -32.77071 -31.82092 -30.24115 -29.34689 -27.46177 -24.85906 -23.59729 -23.23656 -21.92701 -20.64803 -20.13157 -17.93044 -17.26617 -16.93976 -16.23428 -15.69770 -14.87687 -14.67209 -14.09738 -13.72289 -13.53674 -13.38625 -13.32583 -12.91331 -12.81920 -12.60632 -12.08841 -11.93766 -11.64830 -11.43898 -11.02998 -10.86919 -10.82677 -10.55084 -10.14456 -9.98324 -9.91745 -9.65019 -9.16762 -8.65945 -8.34303 -8.01112 -7.00899 -6.60503 -4.24588 0.45429 0.92812 1.97503 2.55592 3.34170 3.38493 3.39849 3.52616 3.61351 4.20979 4.39463 4.56828 4.77309 4.84739 4.95331 5.07025 5.07408 5.19604 5.30807 5.37804 5.47942 5.71111 5.83312 5.93766 6.02210 6.20273 6.25027 6.30780 6.40152 6.45400 6.53747 6.62755 6.64874 6.77375 6.80913 7.01529 7.03934 7.31147 7.82607 7.93340 8.23104 8.75534 9.08605 9.41553 10.74263 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.003179 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.517503 B = 8805.457391 C = 9206.990183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.277 3.723 3 H 0.034 0.966 4 C -0.625 4.625 5 H 0.061 0.939 6 C 0.045 3.955 7 N -0.889 5.889 8 Si 1.036 2.964 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.615 5.615 13 N -0.194 5.194 14 C -0.013 4.013 15 C 0.004 3.996 16 C -0.091 4.091 17 C -0.111 4.111 18 C -0.057 4.057 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.045 4.045 24 C -0.110 4.110 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.271 0.729 29 H 0.374 0.626 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 3.947 -23.197 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.173 3.827 3 H 0.052 0.948 4 C -0.663 4.663 5 H 0.079 0.921 6 C -0.163 4.163 7 N -0.521 5.521 8 Si 0.863 3.137 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.351 5.351 13 N -0.007 5.007 14 C -0.221 4.221 15 C 0.001 3.999 16 C -0.110 4.110 17 C -0.129 4.129 18 C -0.058 4.058 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.045 4.045 24 C -0.132 4.132 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.211 0.789 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.318 6.088 -21.424 22.392 hybrid contribution 0.570 -2.593 -1.272 2.944 sum 2.888 3.495 -22.696 23.144 Atomic orbital electron populations 1.22553 0.99419 1.00032 0.99818 1.18808 0.89679 0.93676 0.80545 0.94790 1.22034 1.42005 1.11362 0.90885 0.92103 1.25670 0.93014 1.06005 0.91564 1.70861 1.42945 1.06498 1.31827 0.84160 0.77582 0.75575 0.76432 1.20763 1.20627 1.19972 1.48806 1.71955 1.07977 1.06376 1.73899 1.04463 1.28254 0.94100 1.23517 1.09449 0.97030 0.92067 1.18423 0.97099 0.92815 0.91539 1.21091 0.98095 0.93328 0.98532 1.20924 1.00051 0.99749 0.92217 1.18137 1.00377 0.92879 0.94430 1.21022 0.99197 0.99541 0.92387 1.20790 1.00588 0.94751 0.98389 1.20785 1.00789 0.94260 0.98217 1.21038 0.99343 0.99721 0.92373 1.17954 0.99679 0.92788 0.94076 1.21230 1.01048 0.99475 0.91408 0.95439 0.93841 0.92245 0.91905 0.78934 0.87821 0.84856 0.85640 0.85845 0.86372 0.86326 0.85747 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.24 37.16 0.34 -3.20 16 2 C 0.28 6.64 2.83 -69.08 -0.20 6.44 16 3 H 0.03 0.85 6.72 -51.93 -0.35 0.50 16 4 C -0.62 -17.05 8.96 -34.44 -0.31 -17.35 16 5 H 0.06 1.77 8.01 -52.49 -0.42 1.35 16 6 C 0.05 1.26 5.19 -17.82 -0.09 1.17 16 7 N -0.89 -26.32 13.70 55.43 0.76 -25.56 16 8 Si 1.04 24.38 26.44 -169.99 -4.50 19.88 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.98 6.14 56.52 0.35 -5.63 16 12 N -0.62 -13.23 6.10 -5.88 -0.04 -13.27 16 13 N -0.19 -3.80 10.57 32.15 0.34 -3.46 16 14 C -0.01 -0.21 10.72 -14.68 -0.16 -0.37 16 15 C 0.00 0.05 5.86 -105.08 -0.62 -0.56 16 16 C -0.09 -1.30 9.47 -39.54 -0.37 -1.67 16 17 C -0.11 -1.37 9.73 -39.55 -0.38 -1.75 16 18 C -0.06 -0.70 5.75 -106.75 -0.61 -1.32 16 19 C -0.10 -1.05 9.76 -39.49 -0.39 -1.43 16 20 C -0.13 -1.15 9.95 -39.92 -0.40 -1.55 16 21 C -0.12 -1.11 9.95 -39.94 -0.40 -1.51 16 22 C -0.11 -1.08 9.77 -39.44 -0.39 -1.47 16 23 C -0.04 -0.55 5.74 -106.85 -0.61 -1.17 16 24 C -0.11 -1.39 9.53 -38.69 -0.37 -1.75 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.35 5.47 -51.93 -0.28 1.06 16 28 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 29 H 0.37 7.63 8.56 -182.60 -1.56 6.06 16 30 H 0.10 1.52 8.02 -52.49 -0.42 1.10 16 31 H 0.13 1.98 7.51 -52.49 -0.39 1.58 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -29.88 317.26 -9.62 -39.49 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.02 Total: 5.63 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -4.95 Total: -27.50 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.06 Total: -42.28 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.50 Total: 19.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.88 -9.62 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.971 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds