Wall clock time and date at job start Mon Mar 30 2020 06:49:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09001 * 109.47372 * 2 1
4 4 C 1.50703 * 109.47419 * 120.00478 * 2 1 3
5 5 H 1.08000 * 120.00161 * 114.36264 * 4 2 1
6 6 C 1.37881 * 119.99525 * 294.36499 * 4 2 1
7 7 N 1.31513 * 119.99659 * 156.61593 * 6 4 2
8 8 Si 1.86802 * 120.00164 * 336.88542 * 6 4 2
9 9 H 1.48497 * 109.46648 * 179.72694 * 8 6 4
10 10 H 1.48498 * 109.47155 * 299.73023 * 8 6 4
11 11 H 1.48505 * 109.46685 * 59.72885 * 8 6 4
12 12 N 1.46496 * 109.47064 * 240.00524 * 2 1 3
13 13 N 1.40094 * 120.00360 * 89.99686 * 12 2 1
14 14 C 1.29787 * 120.00318 * 180.02562 * 13 12 2
15 15 C 1.47428 * 119.99978 * 180.02562 * 14 13 12
16 16 C 1.40750 * 119.76358 * 359.97438 * 15 14 13
17 17 C 1.35691 * 120.84061 * 179.97438 * 16 15 14
18 18 C 1.40723 * 120.03417 * 0.04263 * 17 16 15
19 19 C 1.40482 * 121.03317 * 180.02562 * 18 17 16
20 20 C 1.36145 * 119.72028 * 179.97438 * 19 18 17
21 21 C 1.39358 * 121.01661 * 359.97438 * 20 19 18
22 22 C 1.36091 * 120.95260 * 359.97438 * 21 20 19
23 23 C 1.40665 * 119.65987 * 0.02562 * 22 21 20
24 24 C 1.38592 * 119.75888 * 179.72895 * 15 14 13
25 25 H 1.08997 * 109.46949 * 53.12525 * 1 2 3
26 26 H 1.08996 * 109.47111 * 173.12987 * 1 2 3
27 27 H 1.09003 * 109.46762 * 293.12824 * 1 2 3
28 28 H 0.96997 * 120.00046 * 355.20255 * 7 6 4
29 29 H 0.97007 * 119.99933 * 270.00345 * 12 2 1
30 30 H 1.07993 * 119.99795 * 0.02562 * 14 13 12
31 31 H 1.08002 * 119.57915 * 0.02562 * 16 15 14
32 32 H 1.07997 * 119.98519 * 180.02562 * 17 16 15
33 33 H 1.07997 * 120.13864 * 359.96291 * 19 18 17
34 34 H 1.08006 * 119.48978 * 180.02562 * 20 19 18
35 35 H 1.08001 * 119.52701 * 179.97438 * 21 20 19
36 36 H 1.07998 * 120.17104 * 179.97438 * 22 21 20
37 37 H 1.08000 * 120.27919 * 359.97438 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0325 -0.7105 1.2304
5 1 2.5762 -1.6386 1.1338
6 6 1.7978 -0.1756 2.4794
7 7 1.8028 -0.9539 3.5395
8 14 1.4654 1.6532 2.6649
9 1 1.2395 1.9723 4.0974
10 1 2.6333 2.4219 2.1646
11 1 0.2589 2.0190 1.8799
12 7 2.0183 -0.6905 -1.1962
13 7 2.2518 0.0300 -2.3748
14 6 2.6839 -0.5818 -3.4347
15 6 2.9301 0.1766 -4.6747
16 6 2.6943 1.5639 -4.7037
17 6 2.9140 2.2834 -5.8330
18 6 3.3826 1.6438 -6.9956
19 6 3.6177 2.3683 -8.1761
20 6 4.0716 1.7225 -9.2853
21 6 4.3088 0.3493 -9.2701
22 6 4.0938 -0.3858 -8.1452
23 6 3.6249 0.2466 -6.9795
24 6 3.3969 -0.4808 -5.8019
25 1 -0.3633 0.6167 -0.8221
26 1 -0.3633 -1.0202 -0.1229
27 1 -0.3633 0.4037 0.9451
28 1 1.9021 -1.9133 3.4364
29 1 2.1800 -1.6467 -1.1723
30 1 2.8632 -1.6464 -3.4082
31 1 2.3347 2.0623 -3.8156
32 1 2.7288 3.3473 -5.8398
33 1 3.4388 3.4330 -8.2036
34 1 4.2514 2.2832 -10.1907
35 1 4.6684 -0.1387 -10.1640
36 1 4.2814 -1.4493 -8.1476
37 1 3.5809 -1.5446 -5.7748
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000771880538.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:49:32
Heat of formation + Delta-G solvation = 76.477562 kcal
Electronic energy + Delta-G solvation = -18426.096722 eV
Core-core repulsion = 15554.592367 eV
Total energy + Delta-G solvation = -2871.504355 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.127 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.24679 -37.22518 -36.06593 -34.01696 -32.77071 -31.82092 -30.24115 -29.34689
-27.46177 -24.85906 -23.59729 -23.23656 -21.92701 -20.64803 -20.13157 -17.93044
-17.26617 -16.93976 -16.23428 -15.69770 -14.87687 -14.67209 -14.09738 -13.72289
-13.53674 -13.38625 -13.32583 -12.91331 -12.81920 -12.60632 -12.08841 -11.93766
-11.64830 -11.43898 -11.02998 -10.86919 -10.82677 -10.55084 -10.14456 -9.98324
-9.91745 -9.65019 -9.16762 -8.65945 -8.34303 -8.01112 -7.00899 -6.60503
-4.24588 0.45429 0.92812 1.97503 2.55592 3.34170 3.38493 3.39849
3.52616 3.61351 4.20979 4.39463 4.56828 4.77309 4.84739 4.95331
5.07025 5.07408 5.19604 5.30807 5.37804 5.47942 5.71111 5.83312
5.93766 6.02210 6.20273 6.25027 6.30780 6.40152 6.45400 6.53747
6.62755 6.64874 6.77375 6.80913 7.01529 7.03934 7.31147 7.82607
7.93340 8.23104 8.75534 9.08605 9.41553 10.74263
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.042445 B = 0.003179 C = 0.003040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.517503 B = 8805.457391 C = 9206.990183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.277 3.723
3 H 0.034 0.966
4 C -0.625 4.625
5 H 0.061 0.939
6 C 0.045 3.955
7 N -0.889 5.889
8 Si 1.036 2.964
9 H -0.282 1.282
10 H -0.280 1.280
11 H -0.274 1.274
12 N -0.615 5.615
13 N -0.194 5.194
14 C -0.013 4.013
15 C 0.004 3.996
16 C -0.091 4.091
17 C -0.111 4.111
18 C -0.057 4.057
19 C -0.104 4.104
20 C -0.127 4.127
21 C -0.122 4.122
22 C -0.107 4.107
23 C -0.045 4.045
24 C -0.110 4.110
25 H 0.027 0.973
26 H 0.042 0.958
27 H 0.059 0.941
28 H 0.271 0.729
29 H 0.374 0.626
30 H 0.104 0.896
31 H 0.134 0.866
32 H 0.126 0.874
33 H 0.124 0.876
34 H 0.118 0.882
35 H 0.119 0.881
36 H 0.125 0.875
37 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.944 3.947 -23.197 23.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.173 3.827
3 H 0.052 0.948
4 C -0.663 4.663
5 H 0.079 0.921
6 C -0.163 4.163
7 N -0.521 5.521
8 Si 0.863 3.137
9 H -0.208 1.208
10 H -0.206 1.206
11 H -0.200 1.200
12 N -0.351 5.351
13 N -0.007 5.007
14 C -0.221 4.221
15 C 0.001 3.999
16 C -0.110 4.110
17 C -0.129 4.129
18 C -0.058 4.058
19 C -0.121 4.121
20 C -0.145 4.145
21 C -0.141 4.141
22 C -0.125 4.125
23 C -0.045 4.045
24 C -0.132 4.132
25 H 0.046 0.954
26 H 0.062 0.938
27 H 0.078 0.922
28 H 0.081 0.919
29 H 0.211 0.789
30 H 0.122 0.878
31 H 0.151 0.849
32 H 0.144 0.856
33 H 0.142 0.858
34 H 0.136 0.864
35 H 0.137 0.863
36 H 0.143 0.857
37 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 2.318 6.088 -21.424 22.392
hybrid contribution 0.570 -2.593 -1.272 2.944
sum 2.888 3.495 -22.696 23.144
Atomic orbital electron populations
1.22553 0.99419 1.00032 0.99818 1.18808 0.89679 0.93676 0.80545
0.94790 1.22034 1.42005 1.11362 0.90885 0.92103 1.25670 0.93014
1.06005 0.91564 1.70861 1.42945 1.06498 1.31827 0.84160 0.77582
0.75575 0.76432 1.20763 1.20627 1.19972 1.48806 1.71955 1.07977
1.06376 1.73899 1.04463 1.28254 0.94100 1.23517 1.09449 0.97030
0.92067 1.18423 0.97099 0.92815 0.91539 1.21091 0.98095 0.93328
0.98532 1.20924 1.00051 0.99749 0.92217 1.18137 1.00377 0.92879
0.94430 1.21022 0.99197 0.99541 0.92387 1.20790 1.00588 0.94751
0.98389 1.20785 1.00789 0.94260 0.98217 1.21038 0.99343 0.99721
0.92373 1.17954 0.99679 0.92788 0.94076 1.21230 1.01048 0.99475
0.91408 0.95439 0.93841 0.92245 0.91905 0.78934 0.87821 0.84856
0.85640 0.85845 0.86372 0.86326 0.85747 0.85396
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.55 9.24 37.16 0.34 -3.20 16
2 C 0.28 6.64 2.83 -69.08 -0.20 6.44 16
3 H 0.03 0.85 6.72 -51.93 -0.35 0.50 16
4 C -0.62 -17.05 8.96 -34.44 -0.31 -17.35 16
5 H 0.06 1.77 8.01 -52.49 -0.42 1.35 16
6 C 0.05 1.26 5.19 -17.82 -0.09 1.17 16
7 N -0.89 -26.32 13.70 55.43 0.76 -25.56 16
8 Si 1.04 24.38 26.44 -169.99 -4.50 19.88 16
9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
11 H -0.27 -5.98 6.14 56.52 0.35 -5.63 16
12 N -0.62 -13.23 6.10 -5.88 -0.04 -13.27 16
13 N -0.19 -3.80 10.57 32.15 0.34 -3.46 16
14 C -0.01 -0.21 10.72 -14.68 -0.16 -0.37 16
15 C 0.00 0.05 5.86 -105.08 -0.62 -0.56 16
16 C -0.09 -1.30 9.47 -39.54 -0.37 -1.67 16
17 C -0.11 -1.37 9.73 -39.55 -0.38 -1.75 16
18 C -0.06 -0.70 5.75 -106.75 -0.61 -1.32 16
19 C -0.10 -1.05 9.76 -39.49 -0.39 -1.43 16
20 C -0.13 -1.15 9.95 -39.92 -0.40 -1.55 16
21 C -0.12 -1.11 9.95 -39.94 -0.40 -1.51 16
22 C -0.11 -1.08 9.77 -39.44 -0.39 -1.47 16
23 C -0.04 -0.55 5.74 -106.85 -0.61 -1.17 16
24 C -0.11 -1.39 9.53 -38.69 -0.37 -1.75 16
25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16
27 H 0.06 1.35 5.47 -51.93 -0.28 1.06 16
28 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16
29 H 0.37 7.63 8.56 -182.60 -1.56 6.06 16
30 H 0.10 1.52 8.02 -52.49 -0.42 1.10 16
31 H 0.13 1.98 7.51 -52.49 -0.39 1.58 16
32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16
34 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16
35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16
LS Contribution 317.26 15.07 4.78 4.78
Total: -1.00 -29.88 317.26 -9.62 -39.49
By element:
Atomic # 1 Polarization: 11.65 SS G_CDS: -6.02 Total: 5.63 kcal
Atomic # 6 Polarization: -22.56 SS G_CDS: -4.95 Total: -27.50 kcal
Atomic # 7 Polarization: -43.34 SS G_CDS: 1.06 Total: -42.28 kcal
Atomic # 14 Polarization: 24.38 SS G_CDS: -4.50 Total: 19.88 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -29.88 -9.62 -39.49 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000771880538.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.971 kcal
(2) G-P(sol) polarization free energy of solvation -29.876 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds