Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50703 * 109.47419 * 120.00478 * 2 1 3 5 5 H 1.08000 * 120.00161 * 114.36264 * 4 2 1 6 6 C 1.37881 * 119.99525 * 294.36499 * 4 2 1 7 7 N 1.31513 * 119.99659 * 156.61593 * 6 4 2 8 8 Si 1.86802 * 120.00164 * 336.88542 * 6 4 2 9 9 H 1.48497 * 109.46648 * 179.72694 * 8 6 4 10 10 H 1.48498 * 109.47155 * 299.73023 * 8 6 4 11 11 H 1.48505 * 109.46685 * 59.72885 * 8 6 4 12 12 N 1.46496 * 109.47064 * 240.00524 * 2 1 3 13 13 N 1.40094 * 120.00360 * 89.99686 * 12 2 1 14 14 C 1.29787 * 120.00318 * 180.02562 * 13 12 2 15 15 C 1.47428 * 119.99978 * 180.02562 * 14 13 12 16 16 C 1.40750 * 119.76358 * 359.97438 * 15 14 13 17 17 C 1.35691 * 120.84061 * 179.97438 * 16 15 14 18 18 C 1.40723 * 120.03417 * 0.04263 * 17 16 15 19 19 C 1.40482 * 121.03317 * 180.02562 * 18 17 16 20 20 C 1.36145 * 119.72028 * 179.97438 * 19 18 17 21 21 C 1.39358 * 121.01661 * 359.97438 * 20 19 18 22 22 C 1.36091 * 120.95260 * 359.97438 * 21 20 19 23 23 C 1.40665 * 119.65987 * 0.02562 * 22 21 20 24 24 C 1.38592 * 119.75888 * 179.72895 * 15 14 13 25 25 H 1.08997 * 109.46949 * 53.12525 * 1 2 3 26 26 H 1.08996 * 109.47111 * 173.12987 * 1 2 3 27 27 H 1.09003 * 109.46762 * 293.12824 * 1 2 3 28 28 H 0.96997 * 120.00046 * 355.20255 * 7 6 4 29 29 H 0.97007 * 119.99933 * 270.00345 * 12 2 1 30 30 H 1.07993 * 119.99795 * 0.02562 * 14 13 12 31 31 H 1.08002 * 119.57915 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.98519 * 180.02562 * 17 16 15 33 33 H 1.07997 * 120.13864 * 359.96291 * 19 18 17 34 34 H 1.08006 * 119.48978 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.52701 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.17104 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.27919 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.5762 -1.6386 1.1338 6 6 1.7978 -0.1756 2.4794 7 7 1.8028 -0.9539 3.5395 8 14 1.4654 1.6532 2.6649 9 1 1.2395 1.9723 4.0974 10 1 2.6333 2.4219 2.1646 11 1 0.2589 2.0190 1.8799 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0300 -2.3748 14 6 2.6839 -0.5818 -3.4347 15 6 2.9301 0.1766 -4.6747 16 6 2.6943 1.5639 -4.7037 17 6 2.9140 2.2834 -5.8330 18 6 3.3826 1.6438 -6.9956 19 6 3.6177 2.3683 -8.1761 20 6 4.0716 1.7225 -9.2853 21 6 4.3088 0.3493 -9.2701 22 6 4.0938 -0.3858 -8.1452 23 6 3.6249 0.2466 -6.9795 24 6 3.3969 -0.4808 -5.8019 25 1 -0.3633 0.6167 -0.8221 26 1 -0.3633 -1.0202 -0.1229 27 1 -0.3633 0.4037 0.9451 28 1 1.9021 -1.9133 3.4364 29 1 2.1800 -1.6467 -1.1723 30 1 2.8632 -1.6464 -3.4082 31 1 2.3347 2.0623 -3.8156 32 1 2.7288 3.3473 -5.8398 33 1 3.4388 3.4330 -8.2036 34 1 4.2514 2.2832 -10.1907 35 1 4.6684 -0.1387 -10.1640 36 1 4.2814 -1.4493 -8.1476 37 1 3.5809 -1.5446 -5.7748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = 59.807491 kcal Electronic energy + Delta-G solvation = -18426.819591 eV Core-core repulsion = 15554.592367 eV Total energy + Delta-G solvation = -2872.227224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12166 -38.49413 -37.33602 -35.68798 -33.86807 -33.43724 -31.42288 -30.25683 -28.86942 -26.84641 -24.74570 -24.12140 -22.79161 -22.12580 -21.66890 -19.83589 -18.28515 -18.06354 -17.37121 -16.80322 -16.38756 -15.60276 -15.39533 -15.02121 -14.81012 -14.73276 -14.46098 -14.21676 -14.14580 -13.94416 -13.64074 -13.21613 -13.08570 -12.76090 -12.43420 -12.09680 -11.91808 -11.87412 -11.73024 -11.67804 -11.21284 -11.03776 -10.85713 -10.47572 -9.71370 -9.01098 -8.84489 -8.31021 -6.45407 -0.44695 0.00255 1.06518 1.46840 1.48960 1.51959 1.72143 2.08973 2.38182 2.44289 2.93603 3.28505 3.74290 3.78802 4.01271 4.10412 4.20169 4.35323 4.42589 4.47605 4.49240 4.62536 4.63694 4.77061 4.80376 4.92764 4.97438 5.05958 5.16805 5.31104 5.39031 5.41674 5.49144 5.61825 5.69279 5.73040 5.92567 5.95115 5.95613 6.15672 6.19138 6.64486 7.28864 7.61643 8.52438 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.003179 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.517503 B = 8805.457391 C = 9206.990183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.284 3.716 3 H 0.027 0.973 4 C -0.626 4.626 5 H 0.028 0.972 6 C -0.001 4.001 7 N -0.920 5.920 8 Si 1.074 2.926 9 H -0.282 1.282 10 H -0.269 1.269 11 H -0.245 1.245 12 N -0.639 5.639 13 N -0.236 5.236 14 C 0.026 3.974 15 C -0.035 4.035 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.068 4.068 24 C -0.091 4.091 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.258 0.742 29 H 0.372 0.628 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 5.209 -27.196 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.179 3.821 3 H 0.045 0.955 4 C -0.665 4.665 5 H 0.046 0.954 6 C -0.202 4.202 7 N -0.554 5.554 8 Si 0.895 3.105 9 H -0.207 1.207 10 H -0.195 1.195 11 H -0.169 1.169 12 N -0.375 5.375 13 N -0.046 5.046 14 C -0.183 4.183 15 C -0.037 4.037 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.070 4.070 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.068 4.068 24 C -0.113 4.113 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.209 0.791 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.743 7.346 -25.452 26.632 hybrid contribution 0.623 -3.052 -0.511 3.156 sum 3.366 4.294 -25.963 26.530 Atomic orbital electron populations 1.22420 0.98177 1.00235 1.00162 1.18470 0.90484 0.92743 0.80418 0.95548 1.22214 1.41164 1.10222 0.92874 0.95405 1.26996 0.92381 1.09458 0.91378 1.70974 1.45724 1.05909 1.32789 0.83681 0.79105 0.70914 0.76848 1.20738 1.19471 1.16894 1.48386 1.74621 1.07669 1.06865 1.73946 1.08122 1.28251 0.94235 1.24074 1.04564 0.98024 0.91676 1.18447 1.00515 0.93214 0.91509 1.21051 0.99504 0.93531 0.98874 1.21144 0.99235 1.00713 0.91690 1.18452 1.00104 0.93313 0.95125 1.21309 0.99517 1.00720 0.91946 1.21241 0.98435 0.95089 0.99003 1.21220 0.99396 0.94436 0.98845 1.21328 0.98993 1.01007 0.91902 1.18245 1.00637 0.93176 0.94782 1.21512 0.98524 1.00485 0.90738 0.93645 0.94109 0.92774 0.93342 0.79111 0.86209 0.86363 0.83619 0.83828 0.83464 0.83426 0.83698 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.71 9.24 71.98 0.67 -6.04 16 2 C 0.28 13.86 2.83 44.25 0.13 13.99 16 3 H 0.03 1.33 6.72 -2.39 -0.02 1.32 16 4 C -0.63 -35.44 8.96 25.60 0.23 -35.21 16 5 H 0.03 1.71 8.01 -2.91 -0.02 1.69 16 6 C 0.00 -0.04 5.19 84.66 0.44 0.40 16 7 N -0.92 -56.31 13.70 21.45 0.29 -56.02 16 8 Si 1.07 49.30 26.44 68.60 1.81 51.11 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.24 -10.05 6.14 99.48 0.61 -9.44 16 12 N -0.64 -28.23 6.10 -172.52 -1.05 -29.28 16 13 N -0.24 -9.36 10.57 -52.20 -0.55 -9.91 16 14 C 0.03 0.86 10.72 87.42 0.94 1.79 16 15 C -0.03 -0.99 5.86 -20.16 -0.12 -1.10 16 16 C -0.11 -3.12 9.47 22.29 0.21 -2.91 16 17 C -0.11 -2.57 9.73 22.29 0.22 -2.35 16 18 C -0.07 -1.54 5.75 -21.24 -0.12 -1.66 16 19 C -0.12 -1.98 9.76 22.33 0.22 -1.76 16 20 C -0.12 -1.65 9.95 22.05 0.22 -1.43 16 21 C -0.12 -1.67 9.95 22.04 0.22 -1.45 16 22 C -0.11 -1.92 9.77 22.36 0.22 -1.70 16 23 C -0.07 -1.51 5.74 -21.31 -0.12 -1.63 16 24 C -0.09 -2.12 9.53 22.85 0.22 -1.91 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 2.42 5.47 -2.39 -0.01 2.40 16 28 H 0.26 15.91 8.73 -92.71 -0.81 15.10 16 29 H 0.37 15.82 8.56 -213.32 -1.83 13.99 16 30 H 0.12 3.41 8.02 -2.91 -0.02 3.38 16 31 H 0.12 3.62 7.51 -2.91 -0.02 3.60 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -66.83 317.26 3.17 -63.66 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -0.89 Total: 23.41 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 3.55 Total: -42.97 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -1.31 Total: -95.21 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.81 Total: 51.11 kcal Total: -66.83 3.17 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.463 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds