Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47356 * 2 1 4 4 C 1.50703 * 109.46885 * 119.99132 * 2 1 3 5 5 H 1.08002 * 119.99388 * 120.00587 * 4 2 1 6 6 C 1.37870 * 120.00408 * 300.00316 * 4 2 1 7 7 N 1.31509 * 120.00300 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99997 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47001 * 89.99639 * 8 6 4 10 10 H 1.48496 * 109.47199 * 210.00235 * 8 6 4 11 11 H 1.48503 * 109.47101 * 330.00337 * 8 6 4 12 12 N 1.46497 * 109.47438 * 239.99268 * 2 1 3 13 13 N 1.40105 * 119.99613 * 90.27748 * 12 2 1 14 14 C 1.29912 * 119.99821 * 179.72335 * 13 12 2 15 15 C 1.47116 * 119.99945 * 179.97438 * 14 13 12 16 16 C 1.38964 * 120.70065 * 174.61745 * 15 14 13 17 17 C 1.38809 * 120.56510 * 180.02562 * 16 15 14 18 18 C 1.36119 * 121.84452 * 0.02562 * 17 16 15 19 19 C 1.40487 * 120.68091 * 0.02562 * 18 17 16 20 20 C 1.40566 * 121.33259 * 179.97438 * 19 18 17 21 21 C 1.36145 * 119.62663 * 179.97438 * 20 19 18 22 22 C 1.39293 * 121.00566 * 0.02562 * 21 20 19 23 23 C 1.36314 * 120.91720 * 359.97438 * 22 21 20 24 24 C 1.40008 * 119.60722 * 359.65334 * 23 22 21 25 25 H 1.09005 * 109.46488 * 60.00443 * 1 2 3 26 26 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47310 * 300.00910 * 1 2 3 28 28 H 0.97003 * 120.00394 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00105 * 270.00139 * 12 2 1 30 30 H 1.08000 * 119.99941 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.71726 * 0.02732 * 16 15 14 32 32 H 1.08000 * 119.07319 * 179.97438 * 17 16 15 33 33 H 1.08009 * 119.66053 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.18786 * 359.97034 * 20 19 18 35 35 H 1.08002 * 119.49813 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.54499 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.19402 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1371 -0.8592 3.5566 8 14 0.6257 1.2801 2.6540 9 1 -0.8021 0.8748 2.6991 10 1 0.9770 1.9957 3.9069 11 1 0.8490 2.1775 1.4921 12 7 2.0184 -0.6907 -1.1960 13 7 2.2575 0.0307 -2.3730 14 6 2.6957 -0.5809 -3.4321 15 6 2.9462 0.1766 -4.6681 16 6 3.5189 -0.4397 -5.7742 17 6 3.7545 0.2778 -6.9388 18 6 3.4393 1.5977 -7.0454 19 6 2.8586 2.2854 -5.9668 20 6 2.5281 3.6483 -6.0616 21 6 1.9661 4.2804 -4.9948 22 6 1.7130 3.5972 -3.8076 23 6 2.0209 2.2753 -3.6810 24 6 2.5927 1.5918 -4.7608 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 1.9030 -0.5276 4.4376 29 1 2.1801 -1.6469 -1.1719 30 1 2.8753 -1.6455 -3.4053 31 1 3.7830 -1.4859 -5.7272 32 1 4.2012 -0.2252 -7.7838 33 1 3.6377 2.1217 -7.9688 34 1 2.7190 4.1911 -6.9757 35 1 1.7134 5.3278 -5.0698 36 1 1.2668 4.1220 -2.9759 37 1 1.8200 1.7571 -2.7550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = 95.288741 kcal Electronic energy + Delta-G solvation = -19129.269972 eV Core-core repulsion = 16258.581331 eV Total energy + Delta-G solvation = -2870.688641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99236 -36.88175 -36.19175 -34.43331 -32.48427 -31.31478 -30.12318 -29.40649 -27.58966 -25.20045 -23.77218 -22.71598 -22.29252 -20.43295 -20.20193 -17.47310 -17.33365 -16.38397 -16.19354 -15.51080 -15.45167 -14.59087 -14.12079 -13.61374 -13.57609 -13.31164 -13.15524 -12.92551 -12.59297 -12.51768 -12.26967 -11.87117 -11.65401 -11.35545 -11.06930 -10.96157 -10.81921 -10.76579 -10.25867 -9.70265 -9.65252 -9.39024 -9.17751 -8.75496 -8.48677 -7.99680 -6.89816 -6.25028 -4.27989 0.50856 1.18977 1.96130 2.80972 3.18271 3.29209 3.31190 3.37207 3.50216 4.25499 4.34504 4.73338 4.79960 4.98471 5.08939 5.15484 5.20914 5.27009 5.48844 5.57022 5.60761 5.71396 5.96117 6.14004 6.20476 6.25887 6.28778 6.36818 6.39897 6.50331 6.54345 6.62180 6.73715 6.80451 6.96610 7.06868 7.20380 7.26639 7.45238 7.88859 8.33904 8.74816 9.01968 9.34553 10.87401 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.004623 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.845507 B = 6055.710531 C = 6911.429095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.269 3.731 3 H 0.042 0.958 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.615 5.615 13 N -0.195 5.195 14 C -0.001 4.001 15 C 0.008 3.992 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.048 4.048 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.099 4.099 24 C -0.045 4.045 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.377 0.623 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 5.426 -19.340 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.165 3.835 3 H 0.060 0.940 4 C -0.574 4.574 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.351 5.351 13 N -0.007 5.007 14 C -0.208 4.208 15 C 0.006 3.994 16 C -0.144 4.144 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.048 4.048 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.117 4.117 24 C -0.047 4.047 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.215 0.785 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.041 6.360 -18.503 19.566 hybrid contribution -0.311 -0.466 0.077 0.565 sum -0.270 5.893 -18.426 19.347 Atomic orbital electron populations 1.22596 0.99774 1.01050 0.99012 1.18917 0.89313 0.94182 0.81067 0.93991 1.21038 1.33270 1.14643 0.88429 0.90316 1.24820 0.95523 0.96771 0.95399 1.69861 1.44829 1.40081 0.98073 0.86843 0.80529 0.83418 0.77427 1.20266 1.22084 1.18830 1.48747 1.71716 1.08102 1.06497 1.73707 1.05490 1.27132 0.94407 1.23481 1.08416 0.97231 0.91676 1.19532 0.96765 0.91283 0.91844 1.21051 1.00907 0.99916 0.92483 1.20530 1.00124 0.94430 0.97585 1.20859 1.00442 0.94859 0.97795 1.18022 0.99262 0.93867 0.93674 1.20906 1.00888 0.93467 0.98953 1.20862 0.98883 0.99705 0.93577 1.20998 1.01349 0.95223 0.97673 1.22304 0.94668 0.94505 1.00177 1.19063 0.99424 0.92473 0.93690 0.94706 0.92799 0.93425 0.92198 0.78549 0.87078 0.85725 0.86276 0.86229 0.86085 0.86529 0.86231 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 9.00 37.16 0.33 -3.22 16 2 C 0.27 6.24 2.82 -69.08 -0.20 6.05 16 3 H 0.04 1.03 7.20 -51.93 -0.37 0.65 16 4 C -0.53 -14.40 9.32 -34.44 -0.32 -14.72 16 5 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 8 Si 0.89 21.09 24.37 -169.99 -4.14 16.95 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 12 N -0.62 -12.56 6.10 -5.88 -0.04 -12.59 16 13 N -0.20 -3.65 7.71 32.10 0.25 -3.40 16 14 C 0.00 -0.02 10.75 -14.76 -0.16 -0.18 16 15 C 0.01 0.12 6.04 -102.85 -0.62 -0.50 16 16 C -0.12 -1.47 9.77 -39.10 -0.38 -1.86 16 17 C -0.11 -1.18 9.88 -40.13 -0.40 -1.57 16 18 C -0.12 -1.37 9.71 -39.50 -0.38 -1.76 16 19 C -0.05 -0.66 5.74 -106.87 -0.61 -1.28 16 20 C -0.12 -1.51 9.78 -39.46 -0.39 -1.89 16 21 C -0.11 -1.39 9.94 -39.94 -0.40 -1.79 16 22 C -0.13 -1.92 9.96 -39.88 -0.40 -2.32 16 23 C -0.10 -1.62 9.25 -39.61 -0.37 -1.99 16 24 C -0.05 -0.71 5.90 -104.76 -0.62 -1.33 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.38 7.25 8.58 -182.59 -1.57 5.68 16 30 H 0.11 1.54 8.02 -52.49 -0.42 1.12 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.17 3.11 4.77 -52.50 -0.25 2.86 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -29.58 308.77 -9.27 -38.86 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.77 Total: 7.31 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -5.00 Total: -26.28 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.99 Total: -41.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.14 Total: 16.95 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.58 -9.27 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.144 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds