Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47356 * 2 1 4 4 C 1.50703 * 109.46885 * 119.99132 * 2 1 3 5 5 H 1.08002 * 119.99388 * 120.00587 * 4 2 1 6 6 C 1.37870 * 120.00408 * 300.00316 * 4 2 1 7 7 N 1.31509 * 120.00300 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99997 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47001 * 89.99639 * 8 6 4 10 10 H 1.48496 * 109.47199 * 210.00235 * 8 6 4 11 11 H 1.48503 * 109.47101 * 330.00337 * 8 6 4 12 12 N 1.46497 * 109.47438 * 239.99268 * 2 1 3 13 13 N 1.40105 * 119.99613 * 90.27748 * 12 2 1 14 14 C 1.29912 * 119.99821 * 179.72335 * 13 12 2 15 15 C 1.47116 * 119.99945 * 179.97438 * 14 13 12 16 16 C 1.38964 * 120.70065 * 174.61745 * 15 14 13 17 17 C 1.38809 * 120.56510 * 180.02562 * 16 15 14 18 18 C 1.36119 * 121.84452 * 0.02562 * 17 16 15 19 19 C 1.40487 * 120.68091 * 0.02562 * 18 17 16 20 20 C 1.40566 * 121.33259 * 179.97438 * 19 18 17 21 21 C 1.36145 * 119.62663 * 179.97438 * 20 19 18 22 22 C 1.39293 * 121.00566 * 0.02562 * 21 20 19 23 23 C 1.36314 * 120.91720 * 359.97438 * 22 21 20 24 24 C 1.40008 * 119.60722 * 359.65334 * 23 22 21 25 25 H 1.09005 * 109.46488 * 60.00443 * 1 2 3 26 26 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47310 * 300.00910 * 1 2 3 28 28 H 0.97003 * 120.00394 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00105 * 270.00139 * 12 2 1 30 30 H 1.08000 * 119.99941 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.71726 * 0.02732 * 16 15 14 32 32 H 1.08000 * 119.07319 * 179.97438 * 17 16 15 33 33 H 1.08009 * 119.66053 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.18786 * 359.97034 * 20 19 18 35 35 H 1.08002 * 119.49813 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.54499 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.19402 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1371 -0.8592 3.5566 8 14 0.6257 1.2801 2.6540 9 1 -0.8021 0.8748 2.6991 10 1 0.9770 1.9957 3.9069 11 1 0.8490 2.1775 1.4921 12 7 2.0184 -0.6907 -1.1960 13 7 2.2575 0.0307 -2.3730 14 6 2.6957 -0.5809 -3.4321 15 6 2.9462 0.1766 -4.6681 16 6 3.5189 -0.4397 -5.7742 17 6 3.7545 0.2778 -6.9388 18 6 3.4393 1.5977 -7.0454 19 6 2.8586 2.2854 -5.9668 20 6 2.5281 3.6483 -6.0616 21 6 1.9661 4.2804 -4.9948 22 6 1.7130 3.5972 -3.8076 23 6 2.0209 2.2753 -3.6810 24 6 2.5927 1.5918 -4.7608 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 1.9030 -0.5276 4.4376 29 1 2.1801 -1.6469 -1.1719 30 1 2.8753 -1.6455 -3.4053 31 1 3.7830 -1.4859 -5.7272 32 1 4.2012 -0.2252 -7.7838 33 1 3.6377 2.1217 -7.9688 34 1 2.7190 4.1911 -6.9757 35 1 1.7134 5.3278 -5.0698 36 1 1.2668 4.1220 -2.9759 37 1 1.8200 1.7571 -2.7550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = 78.313459 kcal Electronic energy + Delta-G solvation = -19130.006076 eV Core-core repulsion = 16258.581331 eV Total energy + Delta-G solvation = -2871.424745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98438 -38.30249 -37.22856 -36.02849 -34.09708 -32.83506 -31.10594 -30.54833 -28.95456 -27.18905 -24.88587 -23.70778 -23.47377 -22.13879 -21.36236 -19.14642 -18.34072 -17.85832 -17.43371 -16.98928 -16.62297 -15.94814 -15.24874 -15.10764 -15.02589 -14.64395 -14.31283 -14.12878 -14.10834 -13.91942 -13.59588 -13.33676 -12.88613 -12.78668 -12.64273 -12.19692 -12.08550 -12.00959 -11.73454 -11.54002 -11.32130 -10.89030 -10.68348 -10.51817 -9.46907 -9.20162 -8.39238 -8.19924 -6.46091 -0.51321 0.20604 0.87769 1.28749 1.35193 1.45208 1.73498 2.06852 2.25819 2.32203 2.96942 3.32250 3.69314 3.86831 4.05835 4.14776 4.30811 4.36322 4.40635 4.46183 4.56904 4.58764 4.61884 4.70866 4.73053 4.87509 5.06407 5.12060 5.26254 5.32262 5.36558 5.44457 5.47393 5.58959 5.63530 5.74965 5.89619 6.01537 6.10640 6.21017 6.45951 6.61504 7.20557 7.63151 8.77104 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.004623 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.845507 B = 6055.710531 C = 6911.429095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.280 3.720 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.042 0.958 6 C 0.025 3.975 7 N -0.939 5.939 8 Si 0.948 3.052 9 H -0.260 1.260 10 H -0.293 1.293 11 H -0.252 1.252 12 N -0.638 5.638 13 N -0.232 5.232 14 C 0.031 3.969 15 C -0.044 4.044 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.073 4.073 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.062 4.062 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.271 0.729 29 H 0.376 0.624 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 6.879 -23.414 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.175 3.825 3 H 0.044 0.956 4 C -0.576 4.576 5 H 0.061 0.939 6 C -0.174 4.174 7 N -0.578 5.578 8 Si 0.774 3.226 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.176 1.176 12 N -0.373 5.373 13 N -0.041 5.041 14 C -0.177 4.177 15 C -0.046 4.046 16 C -0.117 4.117 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.073 4.073 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.064 4.064 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.214 0.786 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.045 7.812 -22.603 23.915 hybrid contribution -0.133 -0.953 0.973 1.368 sum -0.088 6.859 -21.630 22.692 Atomic orbital electron populations 1.22464 0.98310 1.01303 0.99523 1.18498 0.90316 0.92782 0.80894 0.95625 1.21299 1.32330 1.13562 0.90431 0.93942 1.25655 0.96938 0.99871 0.94958 1.69997 1.46854 1.42191 0.98739 0.85874 0.79372 0.79772 0.77592 1.18540 1.22000 1.17570 1.48330 1.74339 1.07794 1.06887 1.73894 1.08828 1.26944 0.94468 1.24067 1.04001 0.98309 0.91361 1.19658 1.00790 0.91663 0.92476 1.21503 0.97439 1.01108 0.91652 1.20982 0.99875 0.94478 0.98104 1.21337 0.97799 0.95209 0.98043 1.18401 1.00219 0.94903 0.93733 1.21362 0.98825 0.92955 0.99983 1.21159 0.99025 1.01096 0.92814 1.21214 1.00766 0.94717 0.98926 1.22209 0.97555 0.95681 1.00175 1.19283 0.99605 0.93086 0.94382 0.93028 0.92696 0.93818 0.92011 0.78646 0.85228 0.83209 0.82452 0.82701 0.82489 0.83621 0.85836 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.81 9.00 71.98 0.65 -6.16 16 2 C 0.28 13.51 2.82 44.25 0.12 13.63 16 3 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 4 C -0.54 -30.38 9.32 25.60 0.24 -30.14 16 5 H 0.04 2.63 8.03 -2.91 -0.02 2.61 16 6 C 0.03 1.44 5.45 84.65 0.46 1.90 16 7 N -0.94 -57.47 13.96 21.44 0.30 -57.17 16 8 Si 0.95 44.22 24.37 68.60 1.67 45.89 16 9 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 12 N -0.64 -27.32 6.10 -172.52 -1.05 -28.37 16 13 N -0.23 -9.04 7.71 -52.37 -0.40 -9.45 16 14 C 0.03 1.00 10.75 87.31 0.94 1.94 16 15 C -0.04 -1.26 6.04 -18.72 -0.11 -1.37 16 16 C -0.10 -2.00 9.77 22.58 0.22 -1.78 16 17 C -0.12 -1.97 9.88 21.91 0.22 -1.75 16 18 C -0.10 -1.91 9.71 22.32 0.22 -1.69 16 19 C -0.07 -1.79 5.74 -21.32 -0.12 -1.91 16 20 C -0.11 -2.37 9.78 22.35 0.22 -2.15 16 21 C -0.12 -2.77 9.94 22.04 0.22 -2.55 16 22 C -0.14 -3.94 9.96 22.07 0.22 -3.72 16 23 C -0.14 -4.66 9.25 22.25 0.21 -4.46 16 24 C -0.06 -1.93 5.90 -19.95 -0.12 -2.04 16 25 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.04 1.89 3.27 -2.39 -0.01 1.89 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.38 15.33 8.58 -213.32 -1.83 13.50 16 30 H 0.13 3.52 8.02 -2.91 -0.02 3.50 16 31 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.15 5.65 4.77 -2.93 -0.01 5.64 16 Total: -1.00 -68.21 308.77 3.26 -64.94 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.83 Total: 26.42 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.57 Total: -42.26 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -1.16 Total: -94.99 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.67 Total: 45.89 kcal Total: -68.21 3.26 -64.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.256 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds