Wall clock time and date at job start Mon Mar 30 2020 07:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.50700 * 109.47158 * 240.00304 * 2 1 3 5 5 H 1.08003 * 119.99773 * 240.00298 * 4 2 1 6 6 C 1.37880 * 119.99975 * 59.99497 * 4 2 1 7 7 N 1.31508 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99720 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46903 * 90.00238 * 8 6 4 10 10 H 1.48495 * 109.47085 * 209.99821 * 8 6 4 11 11 H 1.48497 * 109.47537 * 330.00326 * 8 6 4 12 12 C 1.53005 * 109.47457 * 120.00301 * 2 1 3 13 13 O 1.45197 * 109.46716 * 299.99875 * 12 2 1 14 14 C 1.34233 * 116.99854 * 180.02562 * 13 12 2 15 15 O 1.20825 * 119.99740 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00241 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.33860 * 59.48267 * 16 14 13 18 18 C 1.53232 * 109.37855 * 183.47731 * 17 16 14 19 19 C 1.51270 * 108.69741 * 305.66359 * 18 17 16 20 20 O 1.20752 * 120.85299 * 231.23272 * 19 18 17 21 21 C 1.51271 * 118.29945 * 51.25119 * 19 18 17 22 22 C 1.52953 * 109.41572 * 179.97438 * 16 14 13 23 23 H 1.09000 * 109.47094 * 299.99441 * 1 2 3 24 24 H 1.08991 * 109.47681 * 59.99844 * 1 2 3 25 25 H 1.09004 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46746 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47098 * 299.99849 * 3 2 1 28 28 H 1.08996 * 109.47021 * 60.00751 * 3 2 1 29 29 H 0.96997 * 119.99794 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47149 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.47251 * 59.99953 * 12 2 1 32 32 H 1.09005 * 109.40932 * 299.85889 * 16 14 13 33 33 H 1.09003 * 109.33509 * 63.60492 * 17 16 14 34 34 H 1.08998 * 109.65336 * 303.54937 * 17 16 14 35 35 H 1.09002 * 109.62686 * 185.85253 * 18 17 16 36 36 H 1.09001 * 109.62522 * 65.47590 * 18 17 16 37 37 H 1.08996 * 109.62720 * 68.36253 * 21 19 18 38 38 H 1.08998 * 109.62860 * 188.74644 * 21 19 18 39 39 H 1.08997 * 109.48509 * 56.37981 * 22 16 14 40 40 H 1.09004 * 109.49182 * 296.34892 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0368 2.4347 14 6 1.9172 -0.5466 3.6228 15 8 2.6143 -1.5324 3.6705 16 6 1.4524 0.1099 4.8972 17 6 -0.0772 0.1176 4.9345 18 6 -0.5515 0.8616 6.1873 19 6 0.1022 0.2359 7.3995 20 8 -0.5578 -0.1098 8.3497 21 6 1.6040 0.0547 7.3910 22 6 2.0001 -0.6644 6.0972 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7093 1.1618 -3.4843 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7490 1.2492 32 1 1.8181 1.1362 4.9303 33 1 -0.4428 -0.9089 4.9610 34 1 -0.4630 0.6182 4.0464 35 1 -1.6351 0.7806 6.2729 36 1 -0.2672 1.9117 6.1191 37 1 2.0905 1.0292 7.4323 38 1 1.9057 -0.5419 8.2519 39 1 3.0867 -0.7185 6.0297 40 1 1.5855 -1.6725 6.0995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774478233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:52 Heat of formation + Delta-G solvation = -152.787493 kcal Electronic energy + Delta-G solvation = -20953.980407 eV Core-core repulsion = 17732.932702 eV Total energy + Delta-G solvation = -3221.047705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59443 -39.59415 -37.05923 -36.05258 -34.88681 -31.57505 -31.28934 -29.71117 -25.83331 -25.65595 -25.15002 -23.46409 -23.04306 -20.40622 -19.37483 -18.87702 -17.38000 -16.43209 -16.00108 -15.81130 -15.65492 -15.43013 -14.91277 -14.71809 -14.11493 -13.83252 -13.20985 -13.00174 -12.86640 -12.69695 -12.34862 -12.01581 -11.70380 -11.63092 -11.51266 -11.31001 -11.15985 -10.99038 -10.96918 -10.73203 -10.44942 -10.24162 -10.03231 -9.93062 -9.62766 -9.44669 -9.33443 -8.79074 -8.40483 -6.04912 -4.16534 1.69197 2.52770 3.12039 3.25874 3.33012 3.37214 3.83604 4.31281 4.35617 4.43379 4.68532 4.72996 4.94149 5.00711 5.12336 5.18262 5.21713 5.37087 5.50984 5.62794 5.72895 5.76205 5.96507 6.01036 6.05517 6.06971 6.43433 6.71316 6.94693 7.03079 7.09676 7.11558 7.22508 7.36914 7.58731 7.67239 8.01954 8.10996 8.20806 8.36348 8.83390 9.49229 10.96251 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043270 B = 0.003843 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.949820 B = 7283.394152 C = 7597.242308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.346 6.346 14 C 0.457 3.543 15 O -0.518 6.518 16 C -0.087 4.087 17 C -0.107 4.107 18 C -0.168 4.168 19 C 0.361 3.639 20 O -0.461 6.461 21 C -0.168 4.168 22 C -0.099 4.099 23 H 0.016 0.984 24 H 0.084 0.916 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 2.354 15.044 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 C -0.186 4.186 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.262 6.262 14 C 0.300 3.700 15 O -0.408 6.408 16 C -0.106 4.106 17 C -0.145 4.145 18 C -0.205 4.205 19 C 0.236 3.764 20 O -0.334 6.334 21 C -0.206 4.206 22 C -0.136 4.136 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.808 1.990 15.351 15.501 hybrid contribution 0.555 -0.583 -1.037 1.313 sum -0.252 1.408 14.314 14.386 Atomic orbital electron populations 1.21762 0.97303 0.98924 1.00649 1.18246 0.93427 0.93076 0.88308 1.21763 0.98054 0.98176 1.00657 1.20941 1.32028 1.12311 0.89838 0.92536 1.24849 0.94787 0.94886 0.98777 1.69822 1.36335 1.22514 1.23324 0.86546 0.79299 0.79397 0.82486 1.20631 1.21140 1.19903 1.23681 0.98179 0.95789 0.81222 1.86511 1.68948 1.55816 1.14898 1.23395 0.77635 0.82554 0.86424 1.90630 1.36000 1.25794 1.88345 1.21110 0.97525 1.01770 0.90181 1.21522 0.92624 1.02073 0.98243 1.22318 1.02446 1.01734 0.94023 1.24977 0.91581 0.73267 0.86528 1.90410 1.67592 1.39472 1.35918 1.22334 0.94713 1.03540 1.00027 1.21395 1.02689 0.99167 0.90369 0.96454 0.89767 0.95873 0.95873 0.89758 0.96449 0.92891 0.92566 0.92572 0.86949 0.90828 0.88486 0.88778 0.87812 0.88021 0.88873 0.89503 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.11 37.15 0.30 -2.69 16 2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 3 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 4 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.51 9.35 55.43 0.52 -23.00 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.08 1.80 4.26 37.16 0.16 1.96 16 13 O -0.35 -6.40 8.69 -39.27 -0.34 -6.75 16 14 C 0.46 7.32 7.25 36.01 0.26 7.58 16 15 O -0.52 -9.70 15.69 -18.75 -0.29 -10.00 16 16 C -0.09 -0.93 2.52 -91.79 -0.23 -1.16 16 17 C -0.11 -1.04 5.18 -26.61 -0.14 -1.18 16 18 C -0.17 -1.35 6.16 -27.48 -0.17 -1.52 16 19 C 0.36 3.51 6.72 -28.48 -0.19 3.32 16 20 O -0.46 -6.14 17.89 6.01 0.11 -6.03 16 21 C -0.17 -1.31 6.17 -27.48 -0.17 -1.48 16 22 C -0.10 -0.95 4.54 -26.63 -0.12 -1.07 16 23 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 24 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.00 8.02 -51.93 -0.42 0.58 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.84 8.00 -51.93 -0.42 0.43 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -29.71 324.35 -7.05 -36.76 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.45 Total: -1.98 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.46 Total: -9.41 kcal Atomic # 7 Polarization: -23.51 SS G_CDS: 0.52 Total: -23.00 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.53 Total: -22.77 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.71 -7.05 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774478233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.032 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds