Wall clock time and date at job start Mon Mar 30 2020 07:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.50700 * 109.47158 * 240.00304 * 2 1 3 5 5 H 1.08003 * 119.99773 * 240.00298 * 4 2 1 6 6 C 1.37880 * 119.99975 * 59.99497 * 4 2 1 7 7 N 1.31508 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99720 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46903 * 90.00238 * 8 6 4 10 10 H 1.48495 * 109.47085 * 209.99821 * 8 6 4 11 11 H 1.48497 * 109.47537 * 330.00326 * 8 6 4 12 12 C 1.53005 * 109.47457 * 120.00301 * 2 1 3 13 13 O 1.45197 * 109.46716 * 299.99875 * 12 2 1 14 14 C 1.34233 * 116.99854 * 180.02562 * 13 12 2 15 15 O 1.20825 * 119.99740 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00241 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.33860 * 59.48267 * 16 14 13 18 18 C 1.53232 * 109.37855 * 183.47731 * 17 16 14 19 19 C 1.51270 * 108.69741 * 305.66359 * 18 17 16 20 20 O 1.20752 * 120.85299 * 231.23272 * 19 18 17 21 21 C 1.51271 * 118.29945 * 51.25119 * 19 18 17 22 22 C 1.52953 * 109.41572 * 179.97438 * 16 14 13 23 23 H 1.09000 * 109.47094 * 299.99441 * 1 2 3 24 24 H 1.08991 * 109.47681 * 59.99844 * 1 2 3 25 25 H 1.09004 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46746 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47098 * 299.99849 * 3 2 1 28 28 H 1.08996 * 109.47021 * 60.00751 * 3 2 1 29 29 H 0.96997 * 119.99794 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47149 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.47251 * 59.99953 * 12 2 1 32 32 H 1.09005 * 109.40932 * 299.85889 * 16 14 13 33 33 H 1.09003 * 109.33509 * 63.60492 * 17 16 14 34 34 H 1.08998 * 109.65336 * 303.54937 * 17 16 14 35 35 H 1.09002 * 109.62686 * 185.85253 * 18 17 16 36 36 H 1.09001 * 109.62522 * 65.47590 * 18 17 16 37 37 H 1.08996 * 109.62720 * 68.36253 * 21 19 18 38 38 H 1.08998 * 109.62860 * 188.74644 * 21 19 18 39 39 H 1.08997 * 109.48509 * 56.37981 * 22 16 14 40 40 H 1.09004 * 109.49182 * 296.34892 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0368 2.4347 14 6 1.9172 -0.5466 3.6228 15 8 2.6143 -1.5324 3.6705 16 6 1.4524 0.1099 4.8972 17 6 -0.0772 0.1176 4.9345 18 6 -0.5515 0.8616 6.1873 19 6 0.1022 0.2359 7.3995 20 8 -0.5578 -0.1098 8.3497 21 6 1.6040 0.0547 7.3910 22 6 2.0001 -0.6644 6.0972 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7093 1.1618 -3.4843 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7490 1.2492 32 1 1.8181 1.1362 4.9303 33 1 -0.4428 -0.9089 4.9610 34 1 -0.4630 0.6182 4.0464 35 1 -1.6351 0.7806 6.2729 36 1 -0.2672 1.9117 6.1191 37 1 2.0905 1.0292 7.4323 38 1 1.9057 -0.5419 8.2519 39 1 3.0867 -0.7185 6.0297 40 1 1.5855 -1.6725 6.0995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774478233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:51 Heat of formation + Delta-G solvation = -168.024768 kcal Electronic energy + Delta-G solvation = -20954.641145 eV Core-core repulsion = 17732.932702 eV Total energy + Delta-G solvation = -3221.708442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75292 -40.61595 -38.48693 -37.18074 -36.57135 -33.26520 -32.24433 -30.62375 -27.54187 -27.53777 -27.05263 -24.21498 -24.12950 -21.56998 -20.68122 -20.14884 -18.69793 -17.73778 -17.57331 -17.35578 -16.74971 -16.40754 -16.35234 -15.75998 -15.10983 -15.02829 -14.65607 -14.62155 -14.24336 -13.65661 -13.45662 -13.31451 -13.17739 -13.04008 -12.80057 -12.65794 -12.58607 -12.43513 -12.30486 -12.12974 -12.03942 -11.75434 -11.66902 -11.46162 -11.23812 -11.08067 -10.71112 -10.39309 -10.38695 -8.03790 -6.21538 0.93937 1.24970 1.43158 1.45482 1.53638 1.84277 2.46059 3.14453 3.19760 3.49108 3.63606 3.74358 4.00241 4.19097 4.29115 4.29757 4.30714 4.34159 4.36934 4.62519 4.69064 4.75834 4.88705 4.96890 5.02194 5.05252 5.08228 5.21091 5.22748 5.26253 5.28525 5.40847 5.62917 5.67081 5.71590 6.11637 6.20710 6.39285 6.49575 6.78806 6.86365 7.46507 8.95452 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043270 B = 0.003843 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.949820 B = 7283.394152 C = 7597.242308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.117 4.117 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.097 3.903 13 O -0.348 6.348 14 C 0.454 3.546 15 O -0.548 6.548 16 C -0.078 4.078 17 C -0.104 4.104 18 C -0.159 4.159 19 C 0.363 3.637 20 O -0.502 6.502 21 C -0.159 4.159 22 C -0.094 4.094 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 3.404 16.020 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.175 4.175 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.023 3.977 13 O -0.264 6.264 14 C 0.299 3.701 15 O -0.439 6.439 16 C -0.096 4.096 17 C -0.141 4.141 18 C -0.197 4.197 19 C 0.241 3.759 20 O -0.379 6.379 21 C -0.196 4.196 22 C -0.132 4.132 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.600 3.047 16.331 16.624 hybrid contribution 0.499 -0.923 -1.304 1.674 sum -0.101 2.124 15.028 15.177 Atomic orbital electron populations 1.21608 0.96988 0.98467 1.00469 1.18267 0.93690 0.93365 0.88693 1.21605 0.97676 0.97769 1.00464 1.21223 1.32322 1.12447 0.91358 0.93486 1.25466 0.95005 0.95538 1.01031 1.69929 1.36698 1.23154 1.23790 0.85699 0.78692 0.78462 0.79608 1.20401 1.20667 1.19889 1.23200 0.97425 0.95050 0.81984 1.86502 1.69151 1.55670 1.15053 1.24495 0.76655 0.82177 0.86809 1.90622 1.37452 1.27285 1.88555 1.21301 0.98161 1.02998 0.87175 1.21485 0.91720 1.01770 0.99159 1.22302 1.02406 1.02971 0.92001 1.25411 0.92399 0.71855 0.86198 1.90411 1.68529 1.41337 1.37593 1.22311 0.93455 1.05069 0.98781 1.21351 1.02593 0.98467 0.90788 0.94390 0.91995 0.96422 0.96248 0.92003 0.94394 0.92863 0.93407 0.93643 0.83595 0.92052 0.88575 0.88699 0.84744 0.84757 0.88611 0.89395 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.11 71.98 0.58 -4.84 16 2 C 0.06 2.85 0.58 -52.93 -0.03 2.82 16 3 C -0.12 -5.39 8.11 71.98 0.58 -4.80 16 4 C -0.54 -28.30 8.01 25.60 0.21 -28.10 16 5 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 6 C 0.03 1.56 5.15 84.66 0.44 2.00 16 7 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.10 4.13 4.26 71.98 0.31 4.44 16 13 O -0.35 -12.40 8.69 -51.45 -0.45 -12.84 16 14 C 0.45 13.89 7.25 71.24 0.52 14.40 16 15 O -0.55 -20.28 15.69 21.97 0.34 -19.93 16 16 C -0.08 -1.46 2.52 -11.55 -0.03 -1.49 16 17 C -0.10 -1.77 5.18 30.67 0.16 -1.61 16 18 C -0.16 -2.08 6.16 30.11 0.19 -1.90 16 19 C 0.36 6.19 6.72 29.46 0.20 6.39 16 20 O -0.50 -12.77 17.89 -1.43 -0.03 -12.80 16 21 C -0.16 -1.98 6.17 30.11 0.19 -1.79 16 22 C -0.09 -1.60 4.54 30.66 0.14 -1.46 16 23 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 24 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 25 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 28 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.05 2.00 8.13 -2.39 -0.02 1.98 16 32 H 0.15 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.52 8.00 -2.39 -0.02 1.50 16 40 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -64.26 324.35 6.55 -57.71 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.01 Total: 7.40 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.44 Total: -15.94 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.20 Total: -47.72 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.13 Total: -45.57 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.26 6.55 -57.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774478233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.311 kcal (2) G-P(sol) polarization free energy of solvation -64.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds